UHGV-2134452

Genome information

vOTU vOTU-042056

Genome length 29,061 bps

CDS count 43

Completeness 72.59% (medium-quality)

geNomad score 0.9722

Prediction confidence Confident

Genome information
Genome ID	UHGV-2134452
vOTU ID	vOTU-042056
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029671\|Ga0245181_100916
BioSample	SAMEA3449233
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	72.59% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	31
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9722
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	73.83
Jumbo phage	No

Genome content
Genome length	29,061 bps
GC content	50.35%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	43
CDS density	92.26%
Average CDS length	627.14 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2134452_1	KOfam	K10906	recE; exodeoxyribonuclease VIII [EC:3.1.11.-]	NA
UHGV-2134452_1	PHROG	phrog_607	exonuclease VII	DNA, RNA and nucleotide metabolism
UHGV-2134452_1	UniRef90	UniRef90_UPI00164993D6	PD-(D/E)XK nuclease-like domain-containing protein	NA
UHGV-2134452_1	eggNOG-mapper	1006000.GKAS_01944	Enterobacterial exodeoxyribonuclease VIII	NA
UHGV-2134452_1	Pfam	PF12684	NA	DUF3799
UHGV-2134452_1	COG	COG3206	Exopolysaccharide export protein/domain GumC/Wzc1	NA
UHGV-2134452_2	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2134452_2	UniRef90	UniRef90_A0A0N8LTC6	Enterohemolysin	NA
UHGV-2134452_2	eggNOG-mapper	1147144.K7P7N5_9CAUD	DNA metabolic process	NA
UHGV-2134452_2	Pfam	PF03837	RecT family	RecT
UHGV-2134452_2	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-2134452_3	PHROG	phrog_1852	NA	unknown function
UHGV-2134452_3	UniRef90	UniRef90_A0A243TFI4	NA	NA
UHGV-2134452_3	eggNOG-mapper	911008.GLAD_00579	Protein involved in biological_process	NA
UHGV-2134452_3	Pfam	PF13269	NA	DUF4060
UHGV-2134452_3	Structural annotation	PF13269	NA	NA
UHGV-2134452_4	PHROG	phrog_629	excisionase	integration and excision
UHGV-2134452_4	UniRef90	UniRef90_A0A4P7J528	Excisionase	NA
UHGV-2134452_4	eggNOG-mapper	911008.GLAD_00580	Excisionase-like protein	NA
UHGV-2134452_4	Pfam	PF07825	Excisionase-like protein	Exc
UHGV-2134452_4	Structural annotation	PF07825	NA	NA
UHGV-2134452_5	KOfam	K21039	int; enterobacteria phage integrase [EC:2.7.7.- 3.1.-.-]	NA
UHGV-2134452_5	PHROG	phrog_7244	integrase	integration and excision
UHGV-2134452_5	UniRef90	UniRef90_A0A212IN99	Integrase	NA
UHGV-2134452_5	eggNOG-mapper	911008.GLAD_00581	Belongs to the 'phage' integrase family	NA
UHGV-2134452_5	Pfam	PF09003	Bacteriophage lambda integrase, Arm DNA-binding domain	Arm-DNA-bind_1
UHGV-2134452_5	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2134452_5	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2134452_5	Structural annotation	PF00589, PF09003, PF02899, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-2134452_6	PHROG	phrog_1591	tail fiber protein	tail
UHGV-2134452_6	UniRef90	UniRef90_UPI001900AE4E	phage tail protein	NA
UHGV-2134452_6	eggNOG-mapper	1168549.I6R0Q9_9CAUD	N-acetylmuramoyl-L-alanine amidase activity	NA
UHGV-2134452_6	Structural annotation	PF12195	NA	NA
UHGV-2134452_7	PHROG	phrog_1265	membrane protein	moron, auxiliary metabolic gene and host takeover
UHGV-2134452_7	UniRef90	UniRef90_UPI0018667F2E	NA	NA
UHGV-2134452_7	eggNOG-mapper	1080067.BAZH01000027_gene3169	NA	NA
UHGV-2134452_7	Pfam	PF20051	NA	DUF6453
UHGV-2134452_7	Structural annotation	PF20051	NA	NA
UHGV-2134452_8	PHROG	phrog_5616	tail fiber protein	tail
UHGV-2134452_8	UniRef90	UniRef90_A0A2L0TA65	Phage tail protein	NA
UHGV-2134452_8	eggNOG-mapper	1218086.BBNB01000014_gene2049	COG4733 Phage-related protein, tail component	NA
UHGV-2134452_8	Pfam	PF13550	Putative phage tail protein	Phage-tail_3
UHGV-2134452_8	Pfam	PF09327	NA	DUF1983
UHGV-2134452_8	COG	COG0840	Methyl-accepting chemotaxis protein (MCP)	NA
UHGV-2134452_8	Structural annotation	PF13550, PF09327, PF16323, PF21605, MF_04116, NF040662, NF010681, COG4733	NA	NA
UHGV-2134452_9	PHROG	phrog_2134	NA	unknown function
UHGV-2134452_9	UniRef90	UniRef90_A0A0J8VLI5	NA	NA
UHGV-2134452_9	eggNOG-mapper	1218086.BBNB01000014_gene2050	NA	NA
UHGV-2134452_9	Structural annotation	PF00877, NF008096, COG3738	NA	NA
UHGV-2134452_10	PHROG	phrog_2048	tail protein	tail
UHGV-2134452_10	UniRef90	UniRef90_M1K743	NA	NA
UHGV-2134452_10	eggNOG-mapper	1399774.JDWH01000035_gene2232	NA	NA
UHGV-2134452_10	Structural annotation	PF09931, TIGR01600, COG4672	NA	NA
UHGV-2134452_11	PHROG	phrog_1302	distal tail protein	tail
UHGV-2134452_11	UniRef90	UniRef90_A0A0J8Y927	NA	NA
UHGV-2134452_11	eggNOG-mapper	35703.DQ02_21635	NA	NA
UHGV-2134452_11	Structural annotation	PF09343, TIGR02217, COG4718	NA	NA
UHGV-2134452_14	PHROG	phrog_339	tail length tape measure protein	tail
UHGV-2134452_14	UniRef90	UniRef90_A0A8I0G9W9	Phage tail tape measure protein	NA
UHGV-2134452_14	eggNOG-mapper	1147147.K7P6X5_9CAUD	peptidoglycan catabolic process	NA
UHGV-2134452_14	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-2134452_14	Pfam	PF06120	Tail length tape measure protein	Phage_HK97_TLTM
UHGV-2134452_14	Pfam	PF09718	Lambda phage tail tape-measure protein (Tape_meas_lam_C)	Tape_meas_lam_C
UHGV-2134452_14	NCBIFam	TIGR01541.1	phage tail tape measure protein	NA
UHGV-2134452_14	Structural annotation	PF20155, PF06120, TIGR02338, TIGR01541, COG5281	NA	NA
UHGV-2134452_15	PHROG	phrog_5031	NA	unknown function
UHGV-2134452_15	UniRef90	UniRef90_Q9MCS4	Gp15	NA
UHGV-2134452_15	eggNOG-mapper	1147157.K7PH36_9CAUD	YebO-like protein	NA
UHGV-2134452_15	Pfam	PF13974	YebO-like protein	YebO
UHGV-2134452_16	PHROG	phrog_14766	tail protein	tail
UHGV-2134452_16	UniRef90	UniRef90_A0A6M1DMD2	NA	NA
UHGV-2134452_16	eggNOG-mapper	1399774.JDWH01000036_gene4054	NA	NA
UHGV-2134452_16	Pfam	PF13227	NA	DUF4035
UHGV-2134452_16	Structural annotation	PF06223, TIGR01715	NA	NA
UHGV-2134452_17	PHROG	phrog_344	tail assembly chaperone	tail
UHGV-2134452_17	UniRef90	UniRef90_A0A8I0G4U4	Phage tail protein	NA
UHGV-2134452_17	eggNOG-mapper	1399774.JDWH01000036_gene4055	tail assembly chaperone	NA
UHGV-2134452_17	Pfam	PF06222	Phage tail assembly chaperone	Phage_TAC_1
UHGV-2134452_17	Structural annotation	PF06222	NA	NA
UHGV-2134452_18	PHROG	phrog_158	major tail protein	tail
UHGV-2134452_18	UniRef90	UniRef90_A0A0J1PMV8	Ig-like domain-containing protein	NA
UHGV-2134452_18	eggNOG-mapper	35703.DQ02_21660	NA	NA
UHGV-2134452_18	Pfam	PF13927	Immunoglobulin domain	Ig_3
UHGV-2134452_18	Structural annotation	PF16461, PF13895, MF_04116, TIGR02126, COG5437	NA	NA
UHGV-2134452_19	PHROG	phrog_347	tail terminator	connector
UHGV-2134452_19	UniRef90	UniRef90_A0A3W1D7H9	NA	NA
UHGV-2134452_19	eggNOG-mapper	432200.K7P7Q9_9CAUD	NA	NA
UHGV-2134452_19	Structural annotation	PF11367	NA	NA
UHGV-2134452_20	PHROG	phrog_23409	NA	unknown function
UHGV-2134452_20	UniRef90	UniRef90_UPI000F680D9C	HK97 gp10 family phage protein	NA
UHGV-2134452_20	eggNOG-mapper	35703.DQ02_21670	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-2134452_20	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2134452_20	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-2134452_20	Structural annotation	TIGR01725	NA	NA
UHGV-2134452_21	PHROG	phrog_25	head closure Hc1	connector
UHGV-2134452_21	UniRef90	UniRef90_UPI000B49D757	phage head closure protein	NA
UHGV-2134452_21	eggNOG-mapper	399742.Ent638_2233	head-tail adaptor	NA
UHGV-2134452_21	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-2134452_21	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-2134452_21	COG	COG5614	Phage head-tail adaptor	NA
UHGV-2134452_21	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2134452_22	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-2134452_22	UniRef90	UniRef90_UPI0018A574A9	head-tail connector protein	NA
UHGV-2134452_22	eggNOG-mapper	1410619.SRDD_27480	Phage gp6-like head-tail connector protein	NA
UHGV-2134452_22	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-2134452_22	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-2134452_22	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-2134452_23	PHROG	phrog_10	major head protein	head and packaging
UHGV-2134452_23	UniRef90	UniRef90_A0A345C9L3	Phage major capsid protein	NA
UHGV-2134452_23	eggNOG-mapper	399742.Ent638_2598	TIGRFAM Phage major capsid protein, HK97	NA
UHGV-2134452_23	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2134452_23	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2134452_23	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2134452_23	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2134452_24	KOfam	K06904	NA	NA
UHGV-2134452_24	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-2134452_24	UniRef90	UniRef90_A0A133LFS7	Phage prohead protease, HK97 family	NA
UHGV-2134452_24	eggNOG-mapper	667121.ET1_08_01070	Prohead protease	NA
UHGV-2134452_24	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-2134452_24	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-2134452_24	COG	COG3740	Phage head maturation protease	NA
UHGV-2134452_24	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-2134452_25	PHROG	phrog_12	portal protein	head and packaging
UHGV-2134452_25	UniRef90	UniRef90_A0A7I7A5G0	Portal protein	NA
UHGV-2134452_25	eggNOG-mapper	399742.Ent638_2600	TIGRFAM Phage portal protein, HK97	NA
UHGV-2134452_25	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2134452_25	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-2134452_25	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2134452_25	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-2134452_26	PHROG	phrog_7105	NA	unknown function
UHGV-2134452_26	UniRef90	UniRef90_A0A163XUY0	Membrane protein	NA
UHGV-2134452_26	eggNOG-mapper	520999.PROVALCAL_02013	NA	NA
UHGV-2134452_27	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2134452_27	UniRef90	UniRef90_A0A133LFK9	Putative phage terminase, large subunit	NA
UHGV-2134452_27	eggNOG-mapper	1440052.EAKF1_ch0466c	Phage Terminase	NA
UHGV-2134452_27	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2134452_27	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2134452_27	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2134452_27	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-2134452_28	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-2134452_28	UniRef90	UniRef90_A0A2H9EHH5	Phage terminase, small subunit	NA
UHGV-2134452_28	eggNOG-mapper	1147150.K7PHI2_9CAUD	Phage terminase, small subunit	NA
UHGV-2134452_28	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-2134452_28	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-2134452_28	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-2134452_29	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-2134452_29	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2134452_29	UniRef90	UniRef90_A0A768C333	HNH endonuclease	NA
UHGV-2134452_29	eggNOG-mapper	640513.Entas_3084	HNH endonuclease	NA
UHGV-2134452_29	Pfam	PF01844	HNH endonuclease	HNH
UHGV-2134452_29	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2134452_29	Structural annotation	PF01844, COG1403	NA	NA
UHGV-2134452_30	PHROG	phrog_10235	NA	unknown function
UHGV-2134452_31	PHROG	phrog_17483	NA	unknown function
UHGV-2134452_33	PHROG	phrog_312	Rz-like spanin	lysis
UHGV-2134452_33	UniRef90	UniRef90_UPI001BE4218C	NA	NA
UHGV-2134452_33	eggNOG-mapper	1006000.GKAS_04451	NA	NA
UHGV-2134452_33	Pfam	PF10721	NA	DUF2514
UHGV-2134452_34	KOfam	K01185	E3.2.1.17; lysozyme [EC:3.2.1.17]	NA
UHGV-2134452_34	PHROG	phrog_7	endolysin	lysis
UHGV-2134452_34	UniRef90	UniRef90_R8X0Z2	Lysozyme	NA
UHGV-2134452_34	eggNOG-mapper	1147151.K7PM52_9CAUD	Phage lysozyme	NA
UHGV-2134452_34	Pfam	PF00959	Phage lysozyme	Phage_lysozyme
UHGV-2134452_34	HAMAP	MF_04110	Endolysin	NA
UHGV-2134452_34	Structural annotation	MF_04136, COG3772	NA	NA
UHGV-2134452_35	PHROG	phrog_20	holin	lysis
UHGV-2134452_35	UniRef90	UniRef90_A0A2T1LLW1	Holin	NA
UHGV-2134452_35	eggNOG-mapper	1147144.K7P6H9_9CAUD	Pfam:Phage_holin_2_3	NA
UHGV-2134452_35	Pfam	PF16080	Bacteriophage holin family HP1	Phage_holin_2_3
UHGV-2134452_37	PHROG	phrog_753	anti-termination protein Q-like	transcription regulation
UHGV-2134452_37	eggNOG-mapper	35703.DQ02_13770	NA	NA
UHGV-2134452_37	Structural annotation	PF06576	NA	NA
UHGV-2134452_38	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2134452_38	UniRef90	UniRef90_A0A2S4Q880	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-2134452_38	eggNOG-mapper	399742.Ent638_2254	PFAM endodeoxyribonuclease RusA	NA
UHGV-2134452_38	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-2134452_38	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-2134452_38	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-2134452_39	PHROG	phrog_1588	NA	unknown function
UHGV-2134452_39	UniRef90	UniRef90_A0A1V3YZT5	NA	NA
UHGV-2134452_39	eggNOG-mapper	573.JG24_10890	Recombination enhancement, RecA-dependent nuclease	NA
UHGV-2134452_39	Pfam	PF16786	Recombination enhancement, RecA-dependent nuclease	RecA_dep_nuc
UHGV-2134452_39	Structural annotation	PF16786	NA	NA
UHGV-2134452_40	PHROG	phrog_31309	NA	unknown function
UHGV-2134452_41	KOfam	K12149	dinI; DNA-damage-inducible protein I	NA
UHGV-2134452_41	PHROG	phrog_189	RecA filament binding protein DinI	DNA, RNA and nucleotide metabolism
UHGV-2134452_41	UniRef90	UniRef90_A0A7W2WP43	DinI-like family protein	NA
UHGV-2134452_41	eggNOG-mapper	1147151.K7PM44_9CAUD	DinI-like family	NA
UHGV-2134452_41	Pfam	PF06183	DinI-like family	DinI
UHGV-2134452_41	Structural annotation	PF06183, NF007893	NA	NA
UHGV-2134452_42	PHROG	phrog_17759	NA	unknown function
UHGV-2134452_43	KOfam	K02345	holE; DNA polymerase III subunit theta [EC:2.7.7.7]	NA
UHGV-2134452_43	PHROG	phrog_29833	NA	unknown function
UHGV-2134452_43	UniRef90	UniRef90_A0A376I4A0	DNA polymerase III subunit theta	NA
UHGV-2134452_43	eggNOG-mapper	1286170.RORB6_10220	DNA polymerase	NA
UHGV-2134452_43	Pfam	PF06440	DNA polymerase III, theta subunit	DNA_pol3_theta