UHGV-2135295

Genome information

Genome length 37,202 bps

CDS count 57

Completeness 99.90% (high-quality)

geNomad score 0.9794

Prediction confidence Confident

Genome information
Genome ID	UHGV-2135295
vOTU ID	vOTU-010473
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029682\|Ga0242767_100426\|provirus_2_37203
BioSample	SAMN05545013
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9794
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.52
Jumbo phage	No

Genome content
Genome length	37,202 bps
GC content	39.45%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	93.25%
Average CDS length	613.53 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2135295_1	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2135295_1	PHROG	phrog_435	endolysin	lysis
UHGV-2135295_1	UniRef90	UniRef90_A0A6N2UUF0	Autolysin	NA
UHGV-2135295_1	eggNOG-mapper	552396.HMPREF0863_00263	hmm pf01520	NA
UHGV-2135295_1	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-2135295_1	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2135295_1	Structural annotation	PF01520, PF18342, MF_00417, TIGR02883, COG0860, COG4991	NA	NA
UHGV-2135295_2	PHROG	phrog_872	NA	unknown function
UHGV-2135295_2	UniRef90	UniRef90_UPI001D071048	NA	NA
UHGV-2135295_2	eggNOG-mapper	1134413.ANNK01000120_gene2028	NA	NA
UHGV-2135295_2	Pfam	PF11195	NA	DUF2829
UHGV-2135295_2	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-2135295_2	Structural annotation	PF11195, PF14359, COG3613	NA	NA
UHGV-2135295_3	PHROG	phrog_18218	NA	unknown function
UHGV-2135295_3	UniRef90	UniRef90_A0A3D0FFR6	Ribonuclease	NA
UHGV-2135295_3	eggNOG-mapper	411902.CLOBOL_03424	NA	NA
UHGV-2135295_3	Structural annotation	PF06946	NA	NA
UHGV-2135295_4	UniRef90	UniRef90_A0A3R6SMZ1	CTP synthase	NA
UHGV-2135295_4	eggNOG-mapper	411490.ANACAC_00599	NA	NA
UHGV-2135295_5	PHROG	phrog_1382	NA	unknown function
UHGV-2135295_5	eggNOG-mapper	411468.CLOSCI_00272	NA	NA
UHGV-2135295_9	PHROG	phrog_16164	NA	unknown function
UHGV-2135295_9	eggNOG-mapper	619693.HMPREF6745_2540	domain, Protein	NA
UHGV-2135295_9	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-2135295_9	Structural annotation	PF10651, NF032891	NA	NA
UHGV-2135295_10	PHROG	phrog_1382	NA	unknown function
UHGV-2135295_10	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-2135295_10	Structural annotation	NF040910	NA	NA
UHGV-2135295_11	PHROG	phrog_30034	NA	unknown function
UHGV-2135295_11	eggNOG-mapper	742723.HMPREF9477_00891	NA	NA
UHGV-2135295_11	Structural annotation	PF17642	NA	NA
UHGV-2135295_12	PHROG	phrog_9994	NA	unknown function
UHGV-2135295_12	UniRef90	UniRef90_A0A7K3I4P1	H_lectin domain-containing protein	NA
UHGV-2135295_12	eggNOG-mapper	411468.CLOSCI_02412	NA	NA
UHGV-2135295_12	Structural annotation	PF20747, NF012201	NA	NA
UHGV-2135295_13	PHROG	phrog_538	minor tail protein	tail
UHGV-2135295_13	UniRef90	UniRef90_UPI001E30CCA1	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-2135295_13	eggNOG-mapper	411468.CLOSCI_00276	NA	NA
UHGV-2135295_13	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-2135295_13	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-2135295_15	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-2135295_15	UniRef90	UniRef90_UPI001EDFA8F1	phage tail protein	NA
UHGV-2135295_15	eggNOG-mapper	658655.HMPREF0988_02551	NA	NA
UHGV-2135295_15	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-2135295_16	KOfam	K10402	KIF20; kinesin family member 20	NA
UHGV-2135295_16	PHROG	phrog_5218	NA	unknown function
UHGV-2135295_16	UniRef90	UniRef90_A0A414U8D6	PhageMin_Tail domain-containing protein	NA
UHGV-2135295_16	eggNOG-mapper	1235792.C808_03050	Phage-related minor tail protein	NA
UHGV-2135295_16	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-2135295_16	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-2135295_16	Structural annotation	PF10145, PF05384, NF033930, COG5280	NA	NA
UHGV-2135295_18	eggNOG-mapper	411459.RUMOBE_00928	NA	NA
UHGV-2135295_19	eggNOG-mapper	1123075.AUDP01000020_gene1519	NA	NA
UHGV-2135295_19	Structural annotation	PF11836	NA	NA
UHGV-2135295_20	PHROG	phrog_88	major tail protein	tail
UHGV-2135295_20	UniRef90	UniRef90_UPI001D07B441	major tail protein	NA
UHGV-2135295_20	eggNOG-mapper	411459.RUMOBE_00930	NA	NA
UHGV-2135295_20	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-2135295_20	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-2135295_20	Structural annotation	PF06488, PF18316, TIGR01603, COG3498	NA	NA
UHGV-2135295_21	PHROG	phrog_88	major tail protein	tail
UHGV-2135295_21	UniRef90	UniRef90_A0A1C5SV91	Phage major tail protein, phi13 family	NA
UHGV-2135295_21	eggNOG-mapper	1235792.C808_03059	phage major tail protein, phi13 family	NA
UHGV-2135295_21	COG	COG5492	NA	NA
UHGV-2135295_21	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-2135295_22	PHROG	phrog_78	tail terminator	connector
UHGV-2135295_22	eggNOG-mapper	1120933.ATUY01000009_gene1406	NA	NA
UHGV-2135295_22	Structural annotation	PF05657, NF040576, COG3167	NA	NA
UHGV-2135295_23	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2135295_23	UniRef90	UniRef90_UPI001D07550A	HK97 gp10 family phage protein	NA
UHGV-2135295_23	eggNOG-mapper	411459.RUMOBE_00932	Phage protein, HK97 gp10 family	NA
UHGV-2135295_23	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2135295_23	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-2135295_23	Structural annotation	TIGR01725	NA	NA
UHGV-2135295_24	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-2135295_24	UniRef90	UniRef90_UPI0018ABC448	phage head closure protein	NA
UHGV-2135295_24	eggNOG-mapper	1111134.HMPREF1253_0380	head-tail adaptor	NA
UHGV-2135295_24	COG	COG5614	Phage head-tail adaptor	NA
UHGV-2135295_24	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2135295_25	PHROG	phrog_5223	neck protein	connector
UHGV-2135295_25	UniRef90	UniRef90_A0A3D2X9T8	DNA-packaging protein	NA
UHGV-2135295_25	eggNOG-mapper	1203606.HMPREF1526_00977	NA	NA
UHGV-2135295_26	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-2135295_26	PHROG	phrog_10	major head protein	head and packaging
UHGV-2135295_26	UniRef90	UniRef90_UPI001D065474	phage major capsid protein	NA
UHGV-2135295_26	eggNOG-mapper	1280689.AUJC01000011_gene1521	Phage major capsid protein, HK97 family	NA
UHGV-2135295_26	Pfam	PF00574	Clp protease	CLP_protease
UHGV-2135295_26	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2135295_26	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2135295_26	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2135295_27	PHROG	phrog_12	portal protein	head and packaging
UHGV-2135295_27	UniRef90	UniRef90_UPI001EE04D35	phage portal protein	NA
UHGV-2135295_27	eggNOG-mapper	1235793.C809_01918	Phage portal protein	NA
UHGV-2135295_27	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2135295_27	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2135295_27	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-2135295_28	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2135295_28	UniRef90	UniRef90_A0A4V2F7T1	Phage terminase large subunit-like protein	NA
UHGV-2135295_28	eggNOG-mapper	318464.IO99_13765	Terminase	NA
UHGV-2135295_28	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2135295_28	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2135295_28	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2135295_28	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-2135295_29	PHROG	phrog_1066	NA	unknown function
UHGV-2135295_29	eggNOG-mapper	1235793.C809_01916	NA	NA
UHGV-2135295_29	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-2135295_30	UniRef90	UniRef90_UPI000903E652	HNH endonuclease	NA
UHGV-2135295_30	eggNOG-mapper	411902.CLOBOL_03884	HNH endonuclease	NA
UHGV-2135295_30	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2135295_33	PHROG	phrog_11237	NA	unknown function
UHGV-2135295_33	eggNOG-mapper	1235798.C817_04578	NA	NA
UHGV-2135295_35	PHROG	phrog_4292	NA	unknown function
UHGV-2135295_36	PHROG	phrog_7566	NA	unknown function
UHGV-2135295_36	eggNOG-mapper	97139.C824_00037	NA	NA
UHGV-2135295_37	PHROG	phrog_15077	NA	unknown function
UHGV-2135295_37	UniRef90	UniRef90_A5ZPN2	NA	NA
UHGV-2135295_37	eggNOG-mapper	1235792.C808_00069	NA	NA
UHGV-2135295_37	Structural annotation	PF11300, NF033725	NA	NA
UHGV-2135295_38	PHROG	phrog_8470	NA	unknown function
UHGV-2135295_38	UniRef90	UniRef90_UPI001D086F83	PcfJ domain-containing protein	NA
UHGV-2135295_38	eggNOG-mapper	1235792.C808_00066	PcfJ-like protein	NA
UHGV-2135295_38	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-2135295_38	Structural annotation	PF14284	NA	NA
UHGV-2135295_39	eggNOG-mapper	1235792.C808_00065	NA	NA
UHGV-2135295_40	PHROG	phrog_26445	NA	unknown function
UHGV-2135295_41	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-2135295_41	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-2135295_41	UniRef90	UniRef90_A0A894KKE1	RNase H type-1 domain-containing protein	NA
UHGV-2135295_41	eggNOG-mapper	717605.Theco_3053	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	NA
UHGV-2135295_41	Pfam	PF00075	RNase H	RNase_H
UHGV-2135295_41	COG	COG0328	Ribonuclease HI	NA
UHGV-2135295_41	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-2135295_42	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2135295_42	eggNOG-mapper	1280698.AUJS01000007_gene1013	NA	NA
UHGV-2135295_42	Structural annotation	PF21578, NF041486	NA	NA
UHGV-2135295_44	UniRef90	UniRef90_A0A894KJ06	Type II secretory pathway component PulF-like protein	NA
UHGV-2135295_50	PHROG	phrog_18248	transcriptional regulator	transcription regulation
UHGV-2135295_50	UniRef90	UniRef90_R6NXT3	HTH cro/C1-type domain-containing protein	NA
UHGV-2135295_50	eggNOG-mapper	665950.HMPREF1025_02561	sequence-specific DNA binding	NA
UHGV-2135295_50	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2135295_50	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2135295_50	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-2135295_51	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-2135295_51	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2135295_51	UniRef90	UniRef90_A0A4R4FGI2	XRE family transcriptional regulator	NA
UHGV-2135295_51	eggNOG-mapper	1280698.AUJS01000007_gene1002	Helix-turn-helix XRE-family like proteins	NA
UHGV-2135295_51	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-2135295_51	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2135295_51	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-2135295_53	UniRef90	UniRef90_UPI001BBA5CF0	Helix-turn-helix transcriptional regulator	NA
UHGV-2135295_53	eggNOG-mapper	1280698.AUJS01000007_gene1001	Cro/C1-type HTH DNA-binding domain	NA
UHGV-2135295_53	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2135295_53	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-2135295_54	PHROG	phrog_5319	outer membrane protein	other
UHGV-2135295_54	eggNOG-mapper	521011.Mpal_1387	NA	NA
UHGV-2135295_55	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-2135295_55	PHROG	phrog_95	integrase	integration and excision
UHGV-2135295_55	UniRef90	UniRef90_A7B3P5	Resolvase, N-terminal domain protein	NA
UHGV-2135295_55	eggNOG-mapper	411470.RUMGNA_02175	Resolvase, N terminal domain	NA
UHGV-2135295_55	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-2135295_55	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-2135295_55	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2135295_55	Structural annotation	PF00239, NF041201, COG1961	NA	NA
UHGV-2135295_56	KOfam	K02051	ABC.SN.S; NitT/TauT family transport system substrate-binding protein	NA
UHGV-2135295_56	PHROG	phrog_28844	NA	unknown function
UHGV-2135295_56	UniRef90	UniRef90_R6PDH4	NMT1 domain-containing protein	NA
UHGV-2135295_56	eggNOG-mapper	500632.CLONEX_00024	ABC-type nitrate sulfonate bicarbonate transport	NA
UHGV-2135295_56	Pfam	PF09084	NMT1/THI5 like	NMT1
UHGV-2135295_56	COG	COG0715	ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component	NA
UHGV-2135295_57	eggNOG-mapper	742723.HMPREF9477_00952	NA	NA