UHGV-2135876

Genome information

vOTU vOTU-001960

Genome length 44,970 bps

CDS count 69

Completeness 100.00% (complete)

geNomad score 0.9822

Prediction confidence Confident

Genome information
Genome ID	UHGV-2135876
vOTU ID	vOTU-001960
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029607\|Ga0244907_100530
BioSample	SAMEA3708751
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9822
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	67.07
Jumbo phage	No

Genome content
Genome length	44,970 bps
GC content	40.94%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	69
CDS density	90.59%
Average CDS length	593.22 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2135876_2	UniRef90	UniRef90_A0A6L8SWV5	Winged helix-turn-helix transcriptional regulator	NA
UHGV-2135876_2	Pfam	PF13412	Winged helix-turn-helix DNA-binding	HTH_24
UHGV-2135876_2	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-2135876_2	Structural annotation	PF01726, COG0640	NA	NA
UHGV-2135876_3	PHROG	phrog_17690	NA	unknown function
UHGV-2135876_3	eggNOG-mapper	476272.RUMHYD_03925	NA	NA
UHGV-2135876_4	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-2135876_4	PHROG	phrog_116	DNA methyltransferase	other
UHGV-2135876_4	UniRef90	UniRef90_UPI000E4E54B6	DNA cytosine methyltransferase	NA
UHGV-2135876_4	eggNOG-mapper	742740.HMPREF9474_04317	C-5 cytosine-specific DNA methylase	NA
UHGV-2135876_4	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-2135876_4	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-2135876_4	COG	COG0270	DNA-cytosine methylase	NA
UHGV-2135876_4	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-2135876_6	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-2135876_6	UniRef90	UniRef90_UPI001C0F2DCC	Lar family restriction alleviation protein	NA
UHGV-2135876_6	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-2135876_9	PHROG	phrog_4601	NA	unknown function
UHGV-2135876_9	Structural annotation	PF17888	NA	NA
UHGV-2135876_10	PHROG	phrog_419	NA	unknown function
UHGV-2135876_10	UniRef90	UniRef90_A0A060QMU0	NA	NA
UHGV-2135876_10	eggNOG-mapper	1123312.KB904569_gene346	NA	NA
UHGV-2135876_12	AcrCatalog	cluster_11670	NA	NA
UHGV-2135876_13	PHROG	phrog_111	DNA methyltransferase	other
UHGV-2135876_13	UniRef90	UniRef90_A0A174ES64	DNA N-6-adenine-methyltransferase of bacteriophage	NA
UHGV-2135876_13	eggNOG-mapper	411468.CLOSCI_00567	DNA N-6-adenine-methyltransferase	NA
UHGV-2135876_13	PADLOC	oMTase_00015	orphan methyltransferase	RM
UHGV-2135876_13	Pfam	PF05869	DNA N-6-adenine-methyltransferase (Dam)	Dam
UHGV-2135876_13	Structural annotation	PF05869, MF_03187, TIGR01712, COG2263	NA	NA
UHGV-2135876_14	PHROG	phrog_20593	NA	unknown function
UHGV-2135876_15	PHROG	phrog_8684	NA	unknown function
UHGV-2135876_15	UniRef90	UniRef90_UPI000E48CB3D	YopX family protein	NA
UHGV-2135876_15	eggNOG-mapper	411470.RUMGNA_02199	NA	NA
UHGV-2135876_15	Pfam	PF09643	YopX protein	YopX
UHGV-2135876_15	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-2135876_15	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-2135876_18	eggNOG-mapper	1235790.C805_00035	NA	NA
UHGV-2135876_20	eggNOG-mapper	476272.RUMHYD_01751	NA	NA
UHGV-2135876_21	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2135876_21	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-2135876_21	UniRef90	UniRef90_A0A6L8SYJ6	PBSX family phage terminase large subunit	NA
UHGV-2135876_21	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-2135876_21	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-2135876_21	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-2135876_21	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2135876_21	COG	COG1783	Phage terminase large subunit	NA
UHGV-2135876_21	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2135876_22	eggNOG-mapper	411473.RUMCAL_02525	NA	NA
UHGV-2135876_23	PHROG	phrog_533	portal protein	head and packaging
UHGV-2135876_23	UniRef90	UniRef90_A0A1C6CDM8	Phage portal protein, putative, A118 family	NA
UHGV-2135876_23	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-2135876_23	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2135876_24	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2135876_24	UniRef90	UniRef90_A0A412EKN3	Phage capsid protein	NA
UHGV-2135876_24	eggNOG-mapper	33035.JPJF01000106_gene3134	Phage minor capsid protein 2	NA
UHGV-2135876_24	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2135876_24	COG	COG2369	NA	NA
UHGV-2135876_24	Structural annotation	PF06152	NA	NA
UHGV-2135876_25	PHROG	phrog_3754	NA	unknown function
UHGV-2135876_25	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-2135876_26	UniRef90	UniRef90_A0A395X7A4	CTP synthase	NA
UHGV-2135876_26	eggNOG-mapper	476272.RUMHYD_01766	NA	NA
UHGV-2135876_27	PHROG	phrog_21718	NA	unknown function
UHGV-2135876_27	eggNOG-mapper	476272.RUMHYD_01768	NA	NA
UHGV-2135876_28	PHROG	phrog_22984	NA	unknown function
UHGV-2135876_29	PHROG	phrog_16490	NA	unknown function
UHGV-2135876_29	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-2135876_30	PHROG	phrog_20016	NA	unknown function
UHGV-2135876_30	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-2135876_30	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-2135876_30	Structural annotation	PF18573, NF033147	NA	NA
UHGV-2135876_31	PHROG	phrog_28802	NA	unknown function
UHGV-2135876_31	eggNOG-mapper	476272.RUMHYD_01772	NA	NA
UHGV-2135876_32	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-2135876_32	UniRef90	UniRef90_UPI001D14C9C8	phage scaffolding protein	NA
UHGV-2135876_32	eggNOG-mapper	476272.RUMHYD_01775	COG NOG36366 non supervised orthologous group	NA
UHGV-2135876_32	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-2135876_33	PHROG	phrog_544	major head protein	head and packaging
UHGV-2135876_33	UniRef90	UniRef90_A0A395X7A1	S-l_SbsC_C domain-containing protein	NA
UHGV-2135876_33	eggNOG-mapper	1232453.BAIF02000011_gene3359	NA	NA
UHGV-2135876_33	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-2135876_33	Structural annotation	PF03864, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-2135876_34	PHROG	phrog_541	head-tail adaptor	connector
UHGV-2135876_34	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-2135876_35	PHROG	phrog_1129	holin	lysis
UHGV-2135876_35	UniRef90	UniRef90_A0A395X7B2	Enolase	NA
UHGV-2135876_35	eggNOG-mapper	411461.DORFOR_00721	NA	NA
UHGV-2135876_35	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-2135876_35	Structural annotation	PF06946	NA	NA
UHGV-2135876_36	PHROG	phrog_3366	NA	unknown function
UHGV-2135876_36	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-2135876_36	Structural annotation	PF20536, COG5614	NA	NA
UHGV-2135876_37	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2135876_37	UniRef90	UniRef90_UPI000E4989EB	minor capsid protein	NA
UHGV-2135876_37	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-2135876_37	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-2135876_37	Structural annotation	PF11114	NA	NA
UHGV-2135876_38	PHROG	phrog_3266	tail completion	connector
UHGV-2135876_38	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-2135876_38	Structural annotation	PF12691	NA	NA
UHGV-2135876_39	PHROG	phrog_3099	NA	unknown function
UHGV-2135876_39	eggNOG-mapper	411902.CLOBOL_00129	NA	NA
UHGV-2135876_39	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2135876_40	PHROG	phrog_11299	NA	unknown function
UHGV-2135876_40	eggNOG-mapper	33035.JPJF01000106_gene3125	NA	NA
UHGV-2135876_40	Structural annotation	PF10666	NA	NA
UHGV-2135876_41	PHROG	phrog_706	NA	unknown function
UHGV-2135876_41	UniRef90	UniRef90_UPI001BAD00AD	Gp15 family bacteriophage protein	NA
UHGV-2135876_41	eggNOG-mapper	411459.RUMOBE_01383	Bacteriophage Gp15 protein	NA
UHGV-2135876_41	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-2135876_41	Structural annotation	PF06854	NA	NA
UHGV-2135876_42	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-2135876_42	eggNOG-mapper	476272.RUMHYD_01785	phage tail tape measure protein	NA
UHGV-2135876_42	COG	COG1511	NA	NA
UHGV-2135876_42	Structural annotation	PF20155	NA	NA
UHGV-2135876_43	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2135876_43	UniRef90	UniRef90_UPI000A2DD08F	NUMOD4 domain-containing protein	NA
UHGV-2135876_43	eggNOG-mapper	1206110.L0P6F5_9CAUD	sequence-specific DNA binding transcription factor activity	NA
UHGV-2135876_43	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-2135876_43	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-2135876_43	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-2135876_43	Structural annotation	PF07463, PF07453	NA	NA
UHGV-2135876_44	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-2135876_44	UniRef90	UniRef90_A0A173R880	Phage-related protein	NA
UHGV-2135876_44	eggNOG-mapper	476272.RUMHYD_01785	phage tail tape measure protein	NA
UHGV-2135876_44	COG	COG1511	NA	NA
UHGV-2135876_44	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-2135876_45	PHROG	phrog_1194	NA	unknown function
UHGV-2135876_45	eggNOG-mapper	394503.Ccel_3034	NA	NA
UHGV-2135876_45	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-2135876_46	PHROG	phrog_6616	tail protein	tail
UHGV-2135876_46	UniRef90	UniRef90_R5QUN9	Peptidase S74 domain-containing protein	NA
UHGV-2135876_46	eggNOG-mapper	33035.JPJF01000043_gene1002	NA	NA
UHGV-2135876_46	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-2135876_46	Structural annotation	PF05113, PF13884, NF033848, COG3500	NA	NA
UHGV-2135876_47	UniRef90	UniRef90_UPI001C0EBDDC	pyocin knob domain-containing protein	NA
UHGV-2135876_48	PHROG	phrog_14030	NA	unknown function
UHGV-2135876_48	UniRef90	UniRef90_A0A6N9LGV5	CHAP domain-containing protein	NA
UHGV-2135876_48	eggNOG-mapper	1123075.AUDP01000020_gene1533	pathogenesis	NA
UHGV-2135876_48	Pfam	PF05257	CHAP domain	CHAP
UHGV-2135876_48	COG	COG3942	Surface antigen	NA
UHGV-2135876_48	Structural annotation	PF08230, PF19087	NA	NA
UHGV-2135876_49	KOfam	K14059	int; integrase	NA
UHGV-2135876_49	PHROG	phrog_1	integrase	integration and excision
UHGV-2135876_49	UniRef90	UniRef90_A0A6L8SXX0	Tyrosine-type recombinase/integrase	NA
UHGV-2135876_49	eggNOG-mapper	1235798.C817_04751	Belongs to the 'phage' integrase family	NA
UHGV-2135876_49	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2135876_49	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2135876_49	Structural annotation	PF00589, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-2135876_50	UniRef90	UniRef90_A0A3A6GQZ1	Zinc ribbon domain-containing protein	NA
UHGV-2135876_50	COG	COG2314	NA	NA
UHGV-2135876_51	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-2135876_51	UniRef90	UniRef90_A0A416SLU4	XRE family transcriptional regulator	NA
UHGV-2135876_51	eggNOG-mapper	476272.RUMHYD_03305	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-2135876_51	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2135876_51	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-2135876_51	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-2135876_52	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2135876_52	UniRef90	UniRef90_A0A412ELD4	XRE family transcriptional regulator	NA
UHGV-2135876_52	eggNOG-mapper	1235801.C822_00106	Helix-turn-helix XRE-family like proteins	NA
UHGV-2135876_52	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2135876_52	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2135876_52	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-2135876_53	Pfam	PF10544	T5orf172 domain	T5orf172
UHGV-2135876_53	Structural annotation	PF10544	NA	NA
UHGV-2135876_56	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-2135876_56	UniRef90	UniRef90_A0A3A6GZT3	Phage repressor protein	NA
UHGV-2135876_56	eggNOG-mapper	411490.ANACAC_00813	BRO family, N-terminal domain	NA
UHGV-2135876_56	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-2135876_56	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-2135876_56	COG	COG3617	Prophage antirepressor	NA
UHGV-2135876_56	Structural annotation	PF10552, PF02498, TIGR02681, COG3617	NA	NA
UHGV-2135876_58	PHROG	phrog_6058	NA	unknown function
UHGV-2135876_58	eggNOG-mapper	742733.HMPREF9469_05094	NA	NA
UHGV-2135876_59	AcrCatalog	cluster_17974	NA	NA
UHGV-2135876_63	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-2135876_63	UniRef90	UniRef90_UPI001030DCF8	siphovirus Gp157 family protein	NA
UHGV-2135876_63	eggNOG-mapper	411470.RUMGNA_02192	Siphovirus Gp157	NA
UHGV-2135876_63	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-2135876_63	Structural annotation	PF05565	NA	NA
UHGV-2135876_64	UniRef90	UniRef90_R6RDX0	Arginyl-tRNA synthetase	NA
UHGV-2135876_65	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2135876_65	UniRef90	UniRef90_A0A8F2J9K2	ATP-binding protein	NA
UHGV-2135876_65	eggNOG-mapper	1304866.K413DRAFT_0827	AAA domain	NA
UHGV-2135876_65	Pfam	PF13479	AAA domain	AAA_24
UHGV-2135876_65	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-2135876_67	PHROG	phrog_18107	NA	unknown function
UHGV-2135876_67	eggNOG-mapper	476272.RUMHYD_02831	NA	NA
UHGV-2135876_67	Structural annotation	PF05037	NA	NA
UHGV-2135876_68	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-2135876_68	UniRef90	UniRef90_A0A173R9N6	ERCC4 domain-containing protein	NA
UHGV-2135876_68	eggNOG-mapper	476272.RUMHYD_02832	ERCC4 domain	NA
UHGV-2135876_68	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-2135876_68	COG	COG1948	ERCC4-type crossover junction endonuclease	NA
UHGV-2135876_68	Structural annotation	PF02732, NF040956, COG1948	NA	NA
UHGV-2135876_69	PHROG	phrog_1313	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2135876_69	UniRef90	UniRef90_UPI001655DAE1	bifunctional DNA primase/polymerase	NA
UHGV-2135876_69	eggNOG-mapper	500632.CLONEX_03568	Virulence-associated protein E	NA
UHGV-2135876_69	Pfam	PF09250	Bifunctional DNA primase/polymerase, N-terminal	Prim-Pol
UHGV-2135876_69	Pfam	PF08708	Primase C terminal 1 (PriCT-1)	PriCT_1
UHGV-2135876_69	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-2135876_69	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-2135876_69	Structural annotation	PF05272, PF09250, PF08708, MF_00016, NF011296, COG5545	NA	NA