UHGV-2136512

Genome information

Genome length 35,647 bps

CDS count 49

Completeness 99.90% (high-quality)

geNomad score 0.9671

Prediction confidence Confident

Genome information
Genome ID	UHGV-2136512
vOTU ID	vOTU-014600
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029609\|Ga0245148_100313\|provirus_29_38771
BioSample	NA
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	13
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9671
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.2
Jumbo phage	No

Genome content
Genome length	35,647 bps
GC content	55.15%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	90.36%
Average CDS length	659.20 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2136512_1	UniRef90	UniRef90_UPI001BEEF30F	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-2136512_1	eggNOG-mapper	411471.SUBVAR_04787	DNA-templated transcription, initiation	NA
UHGV-2136512_1	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-2136512_1	Structural annotation	NF009177	NA	NA
UHGV-2136512_2	KOfam	K14059	int; integrase	NA
UHGV-2136512_2	PHROG	phrog_1	integrase	integration and excision
UHGV-2136512_2	UniRef90	UniRef90_UPI001958A27A	site-specific integrase	NA
UHGV-2136512_2	eggNOG-mapper	1203606.HMPREF1526_00215	Phage integrase family	NA
UHGV-2136512_2	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-2136512_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2136512_2	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2136512_2	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-2136512_3	PHROG	phrog_33519	NA	unknown function
UHGV-2136512_3	eggNOG-mapper	97139.C824_02721	NA	NA
UHGV-2136512_3	Structural annotation	PF13958, NF010262, COG2337	NA	NA
UHGV-2136512_4	PHROG	phrog_2158	abortive infection resistance protein	moron, auxiliary metabolic gene and host takeover
UHGV-2136512_4	UniRef90	UniRef90_E2ZI86	Abi-like protein	NA
UHGV-2136512_4	eggNOG-mapper	748224.HMPREF9436_01377	Abi-like protein	NA
UHGV-2136512_4	PADLOC	AbiD	AbiD	Abi
UHGV-2136512_4	Pfam	PF07751	Abi-like protein	Abi_2
UHGV-2136512_4	COG	COG4823	Abortive infection bacteriophage resistance protein	NA
UHGV-2136512_4	Structural annotation	PF07751, COG4823	NA	NA
UHGV-2136512_6	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-2136512_6	PHROG	phrog_1373	transcriptional regulator	transcription regulation
UHGV-2136512_6	UniRef90	UniRef90_UPI00051ABD2F	helix-turn-helix domain-containing protein	NA
UHGV-2136512_6	eggNOG-mapper	1280688.AUJB01000009_gene1936	Helix-turn-helix XRE-family like proteins	NA
UHGV-2136512_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2136512_6	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-2136512_7	Pfam	PF05973	NA	Gp49
UHGV-2136512_7	Structural annotation	PF05973, TIGR02683, COG4683	NA	NA
UHGV-2136512_8	Structural annotation	PF21227	NA	NA
UHGV-2136512_9	KOfam	K07448	mrr; restriction system protein	NA
UHGV-2136512_9	PHROG	phrog_19856	NA	unknown function
UHGV-2136512_9	eggNOG-mapper	1235790.C805_00010	Restriction endonuclease	NA
UHGV-2136512_9	PADLOC	ZorD1_00005	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-2136512_9	Pfam	PF04471	Restriction endonuclease	Mrr_cat
UHGV-2136512_9	COG	COG1787	Endonuclease, HJR/Mrr/RecB family	NA
UHGV-2136512_10	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-2136512_10	UniRef90	UniRef90_R5AVU4	CI-like repressor	NA
UHGV-2136512_10	eggNOG-mapper	1295642.H839_08059	Transcriptional	NA
UHGV-2136512_10	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-2136512_10	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-2136512_10	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-2136512_12	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2136512_12	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-2136512_12	UniRef90	UniRef90_K1UM29	Helix-turn-helix domain protein (Fragment)	NA
UHGV-2136512_12	eggNOG-mapper	903814.ELI_1263	Helix-turn-helix domain	NA
UHGV-2136512_12	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2136512_12	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2136512_12	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-2136512_15	PHROG	phrog_750	NA	unknown function
UHGV-2136512_15	eggNOG-mapper	742723.HMPREF9477_00931	NA	NA
UHGV-2136512_15	Structural annotation	PF13835, NF040858	NA	NA
UHGV-2136512_17	KOfam	K06284	abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes	NA
UHGV-2136512_17	PHROG	phrog_4681	antitoxin from a toxin-antitoxin system	moron, auxiliary metabolic gene and host takeover
UHGV-2136512_17	UniRef90	UniRef90_A0A098MBW8	AbrB family transcriptional regulator	NA
UHGV-2136512_17	eggNOG-mapper	268407.PWYN_12320	AbrB family transcriptional regulator	NA
UHGV-2136512_17	Pfam	PF04014	Antidote-toxin recognition MazE, bacterial antitoxin	MazE_antitoxin
UHGV-2136512_17	NCBIFam	TIGR01439.1	transcriptional regulator, AbrB family	NA
UHGV-2136512_17	COG	COG2002	Bifunctional DNA-binding transcriptional regulator of stationary/sporulation/toxin gene expression and antitoxin component of the YhaV-PrlF toxin-antitoxin module	NA
UHGV-2136512_17	Structural annotation	PF15937, TIGR01439, NF004424, COG2002	NA	NA
UHGV-2136512_20	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2136512_20	eggNOG-mapper	411470.RUMGNA_02047	NA	NA
UHGV-2136512_20	Structural annotation	PF21578	NA	NA
UHGV-2136512_21	KOfam	K03700	recU; recombination protein U	NA
UHGV-2136512_21	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2136512_21	UniRef90	UniRef90_A0A1H0W5Y9	Holliday junction resolvase RecU	NA
UHGV-2136512_21	eggNOG-mapper	537013.CLOSTMETH_01720	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-2136512_21	Pfam	PF03838	Recombination protein U	RecU
UHGV-2136512_21	COG	COG3331	Penicillin-binding protein-related factor A, putative recombinase	NA
UHGV-2136512_21	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-2136512_22	PHROG	phrog_38338	NA	unknown function
UHGV-2136512_22	UniRef90	UniRef90_UPI00137B3A8C	Cas9 inhibitor AcrIIA9 family protein	NA
UHGV-2136512_22	eggNOG-mapper	693746.OBV_25410	NA	NA
UHGV-2136512_23	PHROG	phrog_8470	NA	unknown function
UHGV-2136512_23	UniRef90	UniRef90_UPI001C1063FF	PcfJ domain-containing protein	NA
UHGV-2136512_23	eggNOG-mapper	1378168.N510_01842	PcfJ-like protein	NA
UHGV-2136512_23	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-2136512_23	Structural annotation	PF14284	NA	NA
UHGV-2136512_24	PHROG	phrog_15609	NA	unknown function
UHGV-2136512_24	UniRef90	UniRef90_A0A7G9WGA3	NA	NA
UHGV-2136512_24	eggNOG-mapper	1378168.N510_01841	NA	NA
UHGV-2136512_24	Pfam	PF11300	NA	DUF3102
UHGV-2136512_24	COG	COG2433	Possible nuclease of RNase H fold, RuvC/YqgF family	NA
UHGV-2136512_24	Structural annotation	PF11300, PF07321, NF038070	NA	NA
UHGV-2136512_25	PHROG	phrog_5781	NA	unknown function
UHGV-2136512_25	UniRef90	UniRef90_A0A810Q4L2	NA	NA
UHGV-2136512_25	eggNOG-mapper	573061.Clocel_3558	NA	NA
UHGV-2136512_25	Pfam	PF14359	NA	DUF4406
UHGV-2136512_25	COG	COG3613	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-2136512_25	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-2136512_27	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2136512_27	eggNOG-mapper	994573.T472_0208800	NA	NA
UHGV-2136512_27	Pfam	PF07374	NA	DUF1492
UHGV-2136512_27	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-2136512_28	Structural annotation	PF10922, MF_00839	NA	NA
UHGV-2136512_29	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2136512_29	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-2136512_29	UniRef90	UniRef90_A0A416S378	PBSX family phage terminase large subunit	NA
UHGV-2136512_29	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-2136512_29	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-2136512_29	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-2136512_29	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-2136512_29	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2136512_29	COG	COG1783	Phage terminase large subunit	NA
UHGV-2136512_29	Structural annotation	PF04466, PF17288, PF03592, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2136512_30	PHROG	phrog_1233	NA	unknown function
UHGV-2136512_30	eggNOG-mapper	1415774.U728_832	NA	NA
UHGV-2136512_30	Structural annotation	PF13058	NA	NA
UHGV-2136512_31	PHROG	phrog_533	portal protein	head and packaging
UHGV-2136512_31	UniRef90	UniRef90_A0A173TY48	Phage portal protein, putative, A118 family	NA
UHGV-2136512_31	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-2136512_31	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2136512_32	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2136512_32	UniRef90	UniRef90_A0A3D4T830	Phage capsid protein	NA
UHGV-2136512_32	eggNOG-mapper	476272.RUMHYD_01761	Phage minor capsid protein 2	NA
UHGV-2136512_32	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2136512_32	Pfam	PF15644	Papain fold toxin 1, glutamine deamidase	Gln_amidase
UHGV-2136512_32	COG	COG2369	NA	NA
UHGV-2136512_32	Structural annotation	PF06152	NA	NA
UHGV-2136512_33	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-2136512_33	UniRef90	UniRef90_UPI001C0EBA51	phage scaffolding protein	NA
UHGV-2136512_33	eggNOG-mapper	1539298.JO41_08210	Phage minor structural protein GP20	NA
UHGV-2136512_33	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-2136512_33	Structural annotation	PF06810	NA	NA
UHGV-2136512_34	PHROG	phrog_267	major head protein	head and packaging
UHGV-2136512_34	eggNOG-mapper	1235799.C818_04223	NA	NA
UHGV-2136512_34	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-2136512_35	PHROG	phrog_541	head-tail adaptor	connector
UHGV-2136512_35	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-2136512_36	PHROG	phrog_3366	NA	unknown function
UHGV-2136512_36	Structural annotation	PF20536, COG5614	NA	NA
UHGV-2136512_37	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2136512_37	UniRef90	UniRef90_A0A1H7MNM8	Minor capsid protein	NA
UHGV-2136512_37	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-2136512_37	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-2136512_37	Structural annotation	PF11114	NA	NA
UHGV-2136512_38	PHROG	phrog_3266	tail completion	connector
UHGV-2136512_38	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-2136512_38	Structural annotation	PF12691	NA	NA
UHGV-2136512_39	PHROG	phrog_3099	NA	unknown function
UHGV-2136512_39	eggNOG-mapper	693746.OBV_18150	NA	NA
UHGV-2136512_39	Structural annotation	PF10772, TIGR02126, COG3499	NA	NA
UHGV-2136512_40	PHROG	phrog_11299	NA	unknown function
UHGV-2136512_40	eggNOG-mapper	1449050.JNLE01000003_gene3883	NA	NA
UHGV-2136512_40	Structural annotation	PF10666	NA	NA
UHGV-2136512_41	PHROG	phrog_706	NA	unknown function
UHGV-2136512_41	UniRef90	UniRef90_UPI00164D7633	Gp15 family bacteriophage protein	NA
UHGV-2136512_41	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-2136512_41	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-2136512_41	Structural annotation	PF06854	NA	NA
UHGV-2136512_42	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-2136512_42	UniRef90	UniRef90_A0A810PX76	Phage tail tape measure protein	NA
UHGV-2136512_42	eggNOG-mapper	1235797.C816_04182	SLT domain	NA
UHGV-2136512_42	COG	COG1511	NA	NA
UHGV-2136512_43	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-2136512_44	PHROG	phrog_6616	tail protein	tail
UHGV-2136512_44	COG	COG4926	Phage-related protein	NA
UHGV-2136512_44	Structural annotation	PF13550, PF16466, NF033848, COG3500	NA	NA
UHGV-2136512_45	PHROG	phrog_24267	NA	unknown function
UHGV-2136512_45	eggNOG-mapper	742742.HMPREF9452_00376	tail collar domain protein	NA
UHGV-2136512_45	COG	COG4675	Phage tail collar domain	NA
UHGV-2136512_47	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2136512_47	PHROG	phrog_5182	endolysin	lysis
UHGV-2136512_47	UniRef90	UniRef90_R5AZE6	N-acetylmuramoyl-L-alanine amidase family 2	NA
UHGV-2136512_47	eggNOG-mapper	397288.C806_00777	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-2136512_47	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-2136512_47	Pfam	PF00395	S-layer homology domain	SLH
UHGV-2136512_47	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2136512_47	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-2136512_48	PHROG	phrog_199	holin	lysis
UHGV-2136512_48	UniRef90	UniRef90_R5AT18	Toxin secretion/phage lysis holin	NA
UHGV-2136512_48	eggNOG-mapper	742738.HMPREF9460_01388	Bacteriophage holin family	NA
UHGV-2136512_48	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-2136512_48	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-2136512_48	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-2136512_48	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-2136512_49	PHROG	phrog_199	holin	lysis
UHGV-2136512_49	UniRef90	UniRef90_R5AQ05	Toxin secretion/phage lysis holin	NA
UHGV-2136512_49	eggNOG-mapper	742738.HMPREF9460_01388	Bacteriophage holin family	NA
UHGV-2136512_49	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-2136512_49	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-2136512_49	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-2136512_49	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA