UHGV-2136519

Genome information

vOTU vOTU-020103

Genome length 38,922 bps

CDS count 45

Completeness 55.10% (medium-quality)

geNomad score 0.9623

Prediction confidence Confident

Genome information
Genome ID	UHGV-2136519
vOTU ID	vOTU-020103
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029609\|Ga0245148_100113\|provirus_34675_73596
BioSample	SAMEA3449200
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	55.10% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9623
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	50.08
Jumbo phage	No

Genome content
Genome length	38,922 bps
GC content	39.46%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	45
CDS density	87.87%
Average CDS length	765.13 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2136519_1	KOfam	K14059	int; integrase	NA
UHGV-2136519_1	PHROG	phrog_1	integrase	integration and excision
UHGV-2136519_1	UniRef90	UniRef90_A0A1C6BNQ4	Integrase	NA
UHGV-2136519_1	eggNOG-mapper	476272.RUMHYD_01496	NA	NA
UHGV-2136519_1	Pfam	PF02920	DNA binding domain of tn916 integrase	Integrase_DNA
UHGV-2136519_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2136519_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2136519_1	Structural annotation	PF00589, PF02920, PF14659, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-2136519_2	UniRef90	UniRef90_R6N5Z9	HTH_17 domain-containing protein	NA
UHGV-2136519_2	eggNOG-mapper	658088.HMPREF0987_02702	NA	NA
UHGV-2136519_2	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-2136519_2	Structural annotation	PF09035, TIGR01764, COG3311	NA	NA
UHGV-2136519_3	PHROG	phrog_16129	excisionase	integration and excision
UHGV-2136519_3	UniRef90	UniRef90_A0A292S751	DNA-binding protein	NA
UHGV-2136519_3	eggNOG-mapper	641112.ACOK01000108_gene1815	Excisionase from transposon Tn916	NA
UHGV-2136519_3	Pfam	PF09035	Excisionase from transposon Tn916	Tn916-Xis
UHGV-2136519_3	Structural annotation	PF09035, TIGR01764, COG3311	NA	NA
UHGV-2136519_4	PHROG	phrog_2308	NA	unknown function
UHGV-2136519_4	UniRef90	UniRef90_A0A374G174	RNA polymerase subunit sigma-70	NA
UHGV-2136519_4	eggNOG-mapper	626939.HMPREF9443_02022	COG1961 Site-specific recombinases, DNA invertase Pin homologs	NA
UHGV-2136519_4	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2136519_4	Structural annotation	PF06056, COG2771	NA	NA
UHGV-2136519_5	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-2136519_5	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-2136519_5	UniRef90	UniRef90_A0A374FZ97	DNA-directed DNA polymerase	NA
UHGV-2136519_5	eggNOG-mapper	1118055.CAGU01000013_gene800	DNA-directed DNA polymerase	NA
UHGV-2136519_5	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-2136519_5	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-2136519_5	Structural annotation	PF00476, MF_04101, NF011540, COG0749	NA	NA
UHGV-2136519_7	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2136519_7	UniRef90	UniRef90_R5VQ47	Phage-related protein	NA
UHGV-2136519_7	eggNOG-mapper	748727.CLJU_c03380	NA	NA
UHGV-2136519_7	Pfam	PF10991	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
UHGV-2136519_7	Structural annotation	PF10991, MF_04153	NA	NA
UHGV-2136519_8	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-2136519_8	UniRef90	UniRef90_A0A2T0GF39	NA	NA
UHGV-2136519_8	eggNOG-mapper	1035184.HMPREF1042_1370	NA	NA
UHGV-2136519_8	Pfam	PF10926	NA	DUF2800
UHGV-2136519_8	COG	COG2887	RecB family exonuclease	NA
UHGV-2136519_8	Structural annotation	PF10926, MF_03030, COG2887	NA	NA
UHGV-2136519_9	PHROG	phrog_3953	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-2136519_9	UniRef90	UniRef90_UPI001BDD0E89	NA	NA
UHGV-2136519_9	eggNOG-mapper	1118055.CAGU01000013_gene803	NA	NA
UHGV-2136519_9	Pfam	PF10926	NA	DUF2800
UHGV-2136519_9	COG	COG2887	RecB family exonuclease	NA
UHGV-2136519_10	PHROG	phrog_408	NA	unknown function
UHGV-2136519_10	UniRef90	UniRef90_R6N0A3	rRNA biogenesis protein rrp5 putative	NA
UHGV-2136519_10	eggNOG-mapper	1216932.CM240_1416	NA	NA
UHGV-2136519_11	PHROG	phrog_7234	NA	unknown function
UHGV-2136519_11	eggNOG-mapper	394503.Ccel_2861	NA	NA
UHGV-2136519_12	KOfam	K07482	K07482; transposase, IS30 family	NA
UHGV-2136519_12	PHROG	phrog_4646	transposase	integration and excision
UHGV-2136519_12	UniRef90	UniRef90_A0A373Y319	IS30 family transposase	NA
UHGV-2136519_12	eggNOG-mapper	1123009.AUID01000014_gene1842	Helix-turn-helix domain	NA
UHGV-2136519_12	Pfam	PF13936	Helix-turn-helix domain	HTH_38
UHGV-2136519_12	Pfam	PF00665	Integrase core domain	rve
UHGV-2136519_12	NCBIFam	NF033563.0	IS30 family transposase	NA
UHGV-2136519_12	COG	COG2826	Transposase and inactivated derivatives, IS30 family	NA
UHGV-2136519_12	Structural annotation	PF13936, PF02914, MF_01310, NF033563, COG2826	NA	NA
UHGV-2136519_14	KOfam	K06871	NA	NA
UHGV-2136519_14	PHROG	phrog_1802	radical SAM domain-containing protein	other
UHGV-2136519_14	UniRef90	UniRef90_A0A6S6XMA4	Anaerobic sulfatase-maturating enzyme	NA
UHGV-2136519_14	eggNOG-mapper	138119.DSY3074	radical SAM	NA
UHGV-2136519_14	PADLOC	pVip-lone	Viperins not associated with kinases	Viperin
UHGV-2136519_14	Pfam	PF04055	Radical SAM superfamily	Radical_SAM
UHGV-2136519_14	NCBIFam	TIGR04085.1	SPASM domain-containing protein	NA
UHGV-2136519_14	COG	COG0641	Sulfatase maturation enzyme AslB, radical SAM superfamily	NA
UHGV-2136519_14	Structural annotation	PF00962, MF_00660, TIGR04115, COG0641	NA	NA
UHGV-2136519_15	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2136519_15	PHROG	phrog_7698	endolysin	lysis
UHGV-2136519_15	UniRef90	UniRef90_A0A292S6N7	Cpl-7 domain-containing protein	NA
UHGV-2136519_15	eggNOG-mapper	411490.ANACAC_00721	Cpl-7 lysozyme C-terminal domain protein	NA
UHGV-2136519_15	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-2136519_15	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-2136519_15	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2136519_15	Structural annotation	PF05036, PF01510, PF08230, MF_04111, MF_02022, NF008758, COG3023	NA	NA
UHGV-2136519_16	PHROG	phrog_21233	NA	unknown function
UHGV-2136519_16	UniRef90	UniRef90_R6N5Z2	Toxin secretion/phage lysis holin	NA
UHGV-2136519_16	eggNOG-mapper	1232449.BAHV02000021_gene1073	Bacteriophage holin family	NA
UHGV-2136519_16	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-2136519_16	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-2136519_16	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-2136519_16	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-2136519_17	PHROG	phrog_372	tail protein	tail
UHGV-2136519_17	UniRef90	UniRef90_A0A1Y4MZW4	Fibronectin type-III domain-containing protein	NA
UHGV-2136519_17	eggNOG-mapper	207656.S6B662_9CAUD	N-acetylmuramoyl-L-alanine amidase activity	NA
UHGV-2136519_17	Pfam	PF05895	NA	DUF859
UHGV-2136519_18	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-2136519_18	UniRef90	UniRef90_A0A374MYW6	Prophage_tail domain-containing protein	NA
UHGV-2136519_18	eggNOG-mapper	1160721.RBI_I01574	Prophage endopeptidase tail	NA
UHGV-2136519_18	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-2136519_18	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-2136519_18	COG	COG4926	Phage-related protein	NA
UHGV-2136519_18	Structural annotation	PF14594, PF04862, TIGR01665, NF033675, COG4926, COG4935	NA	NA
UHGV-2136519_19	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-2136519_19	UniRef90	UniRef90_A0A224AT67	Phage tail component	NA
UHGV-2136519_19	eggNOG-mapper	1160721.RBI_I01575	Phage tail protein	NA
UHGV-2136519_19	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-2136519_19	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-2136519_19	COG	COG4722	Phage-related protein YomH	NA
UHGV-2136519_19	Structural annotation	PF05709, TIGR01633, COG4722	NA	NA
UHGV-2136519_20	PHROG	phrog_3981	tail length tape measure protein	tail
UHGV-2136519_20	UniRef90	UniRef90_A0A374NA99	Phage tail protein	NA
UHGV-2136519_20	eggNOG-mapper	1216932.CM240_0625	tape measure	NA
UHGV-2136519_20	COG	COG5283	Phage-related tail protein	NA
UHGV-2136519_20	Structural annotation	PF20155, COG5280	NA	NA
UHGV-2136519_21	PHROG	phrog_10613	tail length tape measure protein	tail
UHGV-2136519_21	UniRef90	UniRef90_A0A7X9HUB0	Phage tail protein (Fragment)	NA
UHGV-2136519_21	eggNOG-mapper	573061.Clocel_3967	tape measure	NA
UHGV-2136519_21	COG	COG5283	Phage-related tail protein	NA
UHGV-2136519_21	Structural annotation	PF08824	NA	NA
UHGV-2136519_22	PHROG	phrog_27742	NA	unknown function
UHGV-2136519_22	UniRef90	UniRef90_A0A564QB10	NA	NA
UHGV-2136519_22	eggNOG-mapper	387092.NIS_0354	NA	NA
UHGV-2136519_22	COG	COG1637	Endonuclease NucS, RecB family	NA
UHGV-2136519_22	Structural annotation	PF14088, PF01939, MF_00722, NF011857, COG1637	NA	NA
UHGV-2136519_23	PHROG	phrog_2115	tail protein	tail
UHGV-2136519_23	eggNOG-mapper	1121334.KB911068_gene2297	NA	NA
UHGV-2136519_23	Structural annotation	PF11836	NA	NA
UHGV-2136519_24	PHROG	phrog_88	major tail protein	tail
UHGV-2136519_24	UniRef90	UniRef90_R6MVE2	Phage major tail protein phi13 family	NA
UHGV-2136519_24	eggNOG-mapper	573061.Clocel_3970	phage major tail protein, phi13 family	NA
UHGV-2136519_24	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-2136519_24	COG	COG5492	NA	NA
UHGV-2136519_24	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-2136519_25	PHROG	phrog_78	tail terminator	connector
UHGV-2136519_25	eggNOG-mapper	1216932.CM240_1385	High confidence in function and specificity	NA
UHGV-2136519_25	Structural annotation	PF05657, NF040576, COG3167	NA	NA
UHGV-2136519_26	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2136519_26	UniRef90	UniRef90_R6MSS6	Phage protein HK97 gp10 family	NA
UHGV-2136519_26	eggNOG-mapper	293826.Amet_4024	TIGRFAM phage protein, HK97 gp10 family	NA
UHGV-2136519_26	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2136519_26	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-2136519_26	Structural annotation	TIGR01725	NA	NA
UHGV-2136519_27	PHROG	phrog_25	head closure Hc1	connector
UHGV-2136519_27	UniRef90	UniRef90_R6NYG9	Putative phage head-tail adaptor	NA
UHGV-2136519_27	eggNOG-mapper	573061.Clocel_3973	head-tail	NA
UHGV-2136519_27	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-2136519_27	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-2136519_27	COG	COG5614	Phage head-tail adaptor	NA
UHGV-2136519_27	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2136519_28	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-2136519_28	UniRef90	UniRef90_A0A3D2HUK1	Phage gp6-like head-tail connector protein	NA
UHGV-2136519_28	eggNOG-mapper	665950.HMPREF1025_02654	NA	NA
UHGV-2136519_28	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-2136519_28	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-2136519_28	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-2136519_29	PHROG	phrog_10	major head protein	head and packaging
UHGV-2136519_29	UniRef90	UniRef90_A0A3D2HQG5	Phage major capsid protein	NA
UHGV-2136519_29	eggNOG-mapper	1235802.C823_01519	Phage capsid family	NA
UHGV-2136519_29	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2136519_29	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2136519_29	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2136519_29	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2136519_30	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-2136519_30	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-2136519_30	UniRef90	UniRef90_A0A1C6BQP7	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-2136519_30	eggNOG-mapper	573061.Clocel_3976	Belongs to the peptidase S14 family	NA
UHGV-2136519_30	Pfam	PF00574	Clp protease	CLP_protease
UHGV-2136519_30	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-2136519_30	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-2136519_31	PHROG	phrog_12	portal protein	head and packaging
UHGV-2136519_31	UniRef90	UniRef90_A0A373XRU1	Phage portal protein	NA
UHGV-2136519_31	eggNOG-mapper	1235802.C823_05278	Phage portal protein	NA
UHGV-2136519_31	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2136519_31	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-2136519_31	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2136519_31	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-2136519_32	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2136519_32	UniRef90	UniRef90_A0A374UQ81	Terminase large subunit	NA
UHGV-2136519_32	eggNOG-mapper	552396.HMPREF0863_01433	large subunit	NA
UHGV-2136519_32	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2136519_32	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2136519_32	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2136519_32	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-2136519_33	eggNOG-mapper	1410616.JHXE01000011_gene902	NA	NA
UHGV-2136519_35	PHROG	phrog_2945	NA	unknown function
UHGV-2136519_35	UniRef90	UniRef90_A0A0V8QIN0	Hydrogenase maturation protein HypF	NA
UHGV-2136519_35	eggNOG-mapper	1235790.C805_01783	NA	NA
UHGV-2136519_36	KOfam	K00682	GGCT; gamma-glutamylcyclotransferase [EC:4.3.2.9]	NA
UHGV-2136519_36	PHROG	phrog_2520	gamma-glutamyl cyclotransferase	moron, auxiliary metabolic gene and host takeover
UHGV-2136519_36	UniRef90	UniRef90_R6MWW7	GGACT domain-containing protein	NA
UHGV-2136519_36	eggNOG-mapper	665956.HMPREF1032_02272	Gamma-glutamyl cyclotransferase, AIG2-like	NA
UHGV-2136519_36	Pfam	PF06094	Gamma-glutamyl cyclotransferase, AIG2-like	GGACT
UHGV-2136519_36	COG	COG2105	Predicted gamma-glutamylamine cyclotransferase YtfP, GGCT/AIG2-like family	NA
UHGV-2136519_36	Structural annotation	PF06094, COG2105	NA	NA
UHGV-2136519_37	PHROG	phrog_2443	amidoligase enzyme	other
UHGV-2136519_37	UniRef90	UniRef90_A0A1C6BR15	Putative amidoligase enzyme	NA
UHGV-2136519_37	eggNOG-mapper	573061.Clocel_3982	amidoligase enzyme	NA
UHGV-2136519_37	AcrCatalog	cluster_58247	NA	NA
UHGV-2136519_37	Pfam	PF12224	Putative amidoligase enzyme	Amidoligase_2
UHGV-2136519_37	Structural annotation	PF12224	NA	NA
UHGV-2136519_38	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-2136519_38	PHROG	phrog_23085	NA	unknown function
UHGV-2136519_38	UniRef90	UniRef90_A0A645ETP4	N6_N4_Mtase domain-containing protein	NA
UHGV-2136519_38	eggNOG-mapper	1384066.JAGT01000001_gene951	NA	NA
UHGV-2136519_38	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-2136519_38	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-2136519_38	COG	COG0863	DNA modification methylase	NA
UHGV-2136519_38	Structural annotation	NF000468	NA	NA
UHGV-2136519_39	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-2136519_39	PHROG	phrog_498	DNA methyltransferase	other
UHGV-2136519_39	UniRef90	UniRef90_A0A374MZ62	DNA modification methylase	NA
UHGV-2136519_39	eggNOG-mapper	641112.ACOK01000108_gene1785	NA	NA
UHGV-2136519_39	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-2136519_39	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-2136519_39	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-2136519_39	COG	COG0863	DNA modification methylase	NA
UHGV-2136519_40	eggNOG-mapper	1118057.CAGX01000020_gene1625	NA	NA
UHGV-2136519_41	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-2136519_41	UniRef90	UniRef90_R6MQ31	Putative phage terminase small subunit	NA
UHGV-2136519_41	eggNOG-mapper	1122146.AUHP01000010_gene1049	NA	NA
UHGV-2136519_41	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-2136519_41	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-2136519_42	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-2136519_42	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2136519_42	UniRef90	UniRef90_R6MSS7	HNH endonuclease domain protein	NA
UHGV-2136519_42	eggNOG-mapper	1121334.KB911068_gene2277	HNH endonuclease	NA
UHGV-2136519_42	Pfam	PF01844	HNH endonuclease	HNH
UHGV-2136519_42	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2136519_42	Structural annotation	PF01844, COG1403	NA	NA
UHGV-2136519_43	eggNOG-mapper	1122915.AUGY01000080_gene3275	RloB-like protein	NA
UHGV-2136519_44	UniRef90	UniRef90_A0A3D2QSP3	Dockerin domain-containing protein	NA
UHGV-2136519_44	Pfam	PF00404	Dockerin type I domain	Dockerin_1