UHGV-2137724

Genome information

Genome length 31,247 bps

CDS count 49

Completeness 90.73% (high-quality)

geNomad score 0.9597

Prediction confidence Confident

Genome information
Genome ID	UHGV-2137724
vOTU ID	vOTU-063285
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029698\|Ga0245184_100568\|provirus_10062_45945
BioSample	NA
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	90.73% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9597
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.15
Jumbo phage	No

Genome content
Genome length	31,247 bps
GC content	37.89%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	91.83%
Average CDS length	591.43 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2137724_5	Pfam	PF19199	Phage major coat protein, Gp8	Phage_coatGP8
UHGV-2137724_6	KOfam	K10954	zot; zona occludens toxin	NA
UHGV-2137724_6	PHROG	phrog_197	Zot-like toxin	moron, auxiliary metabolic gene and host takeover
UHGV-2137724_6	UniRef90	UniRef90_R6UB68	Zot domain-containing protein	NA
UHGV-2137724_6	eggNOG-mapper	398512.JQKC01000060_gene2680	Zonular occludens toxin (Zot)	NA
UHGV-2137724_6	Pfam	PF05707	Zonular occludens toxin (Zot)	Zot
UHGV-2137724_6	COG	COG4128	Zona occludens toxin, predicted ATPase	NA
UHGV-2137724_6	Structural annotation	PF05707, MF_04155, NF005424, COG4128	NA	NA
UHGV-2137724_7	eggNOG-mapper	1105031.HMPREF1141_2583	NA	NA
UHGV-2137724_8	eggNOG-mapper	394503.Ccel_1571	NA	NA
UHGV-2137724_9	KOfam	K07467	nicK; putative DNA relaxase	NA
UHGV-2137724_9	PHROG	phrog_453	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2137724_9	UniRef90	UniRef90_R6UNI0	Replication initiation factor	NA
UHGV-2137724_9	eggNOG-mapper	1235835.C814_01607	Replication initiation factor	NA
UHGV-2137724_9	Pfam	PF18106	Rolling Circle replication initiation protein N-terminal domain	Rol_Rep_N
UHGV-2137724_9	Pfam	PF02486	Replication initiation factor	Rep_trans
UHGV-2137724_9	COG	COG2946	DNA relaxase NicK	NA
UHGV-2137724_9	Structural annotation	PF02486, PF18106, MF_00408, NF041493, COG2946	NA	NA
UHGV-2137724_10	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-2137724_10	PHROG	phrog_1	integrase	integration and excision
UHGV-2137724_10	UniRef90	UniRef90_R6UIE9	Site-specific recombinase XerD	NA
UHGV-2137724_10	eggNOG-mapper	350688.Clos_1827	Belongs to the 'phage' integrase family	NA
UHGV-2137724_10	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-2137724_10	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2137724_10	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-2137724_10	Structural annotation	PF00589, PF02899, MF_01808, TIGR02225, COG4974	NA	NA
UHGV-2137724_11	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-2137724_11	PHROG	phrog_95	integrase	integration and excision
UHGV-2137724_11	UniRef90	UniRef90_UPI00189960B8	recombinase family protein	NA
UHGV-2137724_11	eggNOG-mapper	1235835.C814_00825	Resolvase, N terminal domain	NA
UHGV-2137724_11	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-2137724_11	Pfam	PF07508	Recombinase	Recombinase
UHGV-2137724_11	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-2137724_11	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2137724_11	Structural annotation	PF00239, PF07508, PF19962, NF041201, COG1961	NA	NA
UHGV-2137724_12	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-2137724_12	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-2137724_12	UniRef90	UniRef90_UPI0005D18D19	type II toxin-antitoxin system HicA family toxin	NA
UHGV-2137724_12	eggNOG-mapper	1514668.JOOA01000001_gene180	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-2137724_12	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-2137724_12	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-2137724_12	Structural annotation	PF07927, COG1724	NA	NA
UHGV-2137724_13	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-2137724_13	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-2137724_13	UniRef90	UniRef90_UPI0005D25C1A	type II toxin-antitoxin system HicB family antitoxin	NA
UHGV-2137724_13	eggNOG-mapper	1514668.JOOA01000001_gene181	HicB_like antitoxin of bacterial toxin-antitoxin system	NA
UHGV-2137724_13	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-2137724_13	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-2137724_13	Structural annotation	PF15919, COG1598	NA	NA
UHGV-2137724_14	UniRef90	UniRef90_A0A374DTF3	NA	NA
UHGV-2137724_15	PHROG	phrog_1914	NA	unknown function
UHGV-2137724_15	UniRef90	UniRef90_A0A374NDM7	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-2137724_15	eggNOG-mapper	1160721.RBI_I01604	NA	NA
UHGV-2137724_15	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-2137724_15	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-2137724_15	Structural annotation	PF06114, COG2856	NA	NA
UHGV-2137724_16	UniRef90	UniRef90_R6R9C1	HTH cro/C1-type domain-containing protein	NA
UHGV-2137724_16	eggNOG-mapper	718252.FP2_04820	Cro/C1-type HTH DNA-binding domain	NA
UHGV-2137724_16	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-2137724_17	UniRef90	UniRef90_R6R313	NA	NA
UHGV-2137724_17	eggNOG-mapper	1347392.CCEZ01000005_gene1206	NA	NA
UHGV-2137724_17	Structural annotation	PF05339, NF041951, COG1476	NA	NA
UHGV-2137724_21	PHROG	phrog_34937	NA	unknown function
UHGV-2137724_24	PHROG	phrog_25754	NA	unknown function
UHGV-2137724_24	eggNOG-mapper	1196322.A370_02055	NA	NA
UHGV-2137724_24	Structural annotation	PF18195, MF_00257, NF041655, COG1923	NA	NA
UHGV-2137724_26	PHROG	phrog_38338	NA	unknown function
UHGV-2137724_26	UniRef90	UniRef90_UPI00189B3582	Cas9 inhibitor AcrIIA9 family protein	NA
UHGV-2137724_26	eggNOG-mapper	693746.OBV_24020	NA	NA
UHGV-2137724_27	PHROG	phrog_8470	NA	unknown function
UHGV-2137724_27	UniRef90	UniRef90_UPI00165E2CD5	PcfJ domain-containing protein	NA
UHGV-2137724_27	eggNOG-mapper	1501230.ET33_21150	PcfJ-like protein	NA
UHGV-2137724_27	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-2137724_27	Structural annotation	PF14284	NA	NA
UHGV-2137724_28	PHROG	phrog_15609	NA	unknown function
UHGV-2137724_28	eggNOG-mapper	641112.ACOK01000073_gene2872	NA	NA
UHGV-2137724_28	Structural annotation	PF11300, NF038070	NA	NA
UHGV-2137724_29	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-2137724_29	UniRef90	UniRef90_A0A2X3IMH1	NA	NA
UHGV-2137724_29	eggNOG-mapper	1567010.A0A0A7RU90_9VIRU	protein disulfide oxidoreductase activity	NA
UHGV-2137724_29	Structural annotation	NF001611, COG1694	NA	NA
UHGV-2137724_31	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2137724_31	UniRef90	UniRef90_R6RCC6	Gp31	NA
UHGV-2137724_31	eggNOG-mapper	1414720.CBYM010000002_gene589	NA	NA
UHGV-2137724_31	Structural annotation	PF21578	NA	NA
UHGV-2137724_32	PHROG	phrog_824	NA	unknown function
UHGV-2137724_32	UniRef90	UniRef90_A0A3R6I6C8	VRR-NUC domain-containing protein	NA
UHGV-2137724_32	eggNOG-mapper	397288.C806_00096	VRR_NUC	NA
UHGV-2137724_32	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-2137724_32	Structural annotation	PF08774	NA	NA
UHGV-2137724_34	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-2137724_34	UniRef90	UniRef90_UPI001494A551	P27 family phage terminase small subunit	NA
UHGV-2137724_34	eggNOG-mapper	1033744.CAEL01000029_gene1286	Phage terminase, small subunit	NA
UHGV-2137724_34	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-2137724_34	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-2137724_35	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2137724_35	UniRef90	UniRef90_A0A0L6JG50	Terminase	NA
UHGV-2137724_35	eggNOG-mapper	398512.JQKC01000009_gene448	Phage Terminase	NA
UHGV-2137724_35	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2137724_35	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2137724_35	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2137724_35	Structural annotation	PF20441, PF03354, MF_04013, TIGR01547, COG4626	NA	NA
UHGV-2137724_36	PHROG	phrog_12	portal protein	head and packaging
UHGV-2137724_36	UniRef90	UniRef90_H2JJA2	Phage portal protein, HK97 family	NA
UHGV-2137724_36	eggNOG-mapper	755731.Clo1100_0545	Phage portal protein, HK97 family	NA
UHGV-2137724_36	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2137724_36	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-2137724_36	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2137724_36	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-2137724_37	KOfam	K06904	NA	NA
UHGV-2137724_37	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-2137724_37	UniRef90	UniRef90_H2JJA3	Phage prohead protease, HK97 family	NA
UHGV-2137724_37	eggNOG-mapper	755731.Clo1100_0546	Phage prohead protease, HK97 family	NA
UHGV-2137724_37	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-2137724_37	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-2137724_37	COG	COG3740	Phage head maturation protease	NA
UHGV-2137724_37	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-2137724_38	PHROG	phrog_10	major head protein	head and packaging
UHGV-2137724_38	UniRef90	UniRef90_F1TFK1	Phage major capsid protein, HK97 family	NA
UHGV-2137724_38	eggNOG-mapper	588581.Cpap_1272	Phage capsid family	NA
UHGV-2137724_38	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2137724_38	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2137724_38	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2137724_38	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2137724_39	PHROG	phrog_2550	NA	unknown function
UHGV-2137724_39	UniRef90	UniRef90_G2G0W0	Prophage pi2 protein 35	NA
UHGV-2137724_39	eggNOG-mapper	913865.DOT_5631	NA	NA
UHGV-2137724_39	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-2137724_40	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-2137724_40	UniRef90	UniRef90_A0A373XMG4	Phage head-tail adapter protein	NA
UHGV-2137724_40	eggNOG-mapper	1414720.CBYM010000040_gene1649	head-tail adaptor	NA
UHGV-2137724_40	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-2137724_40	COG	COG5614	Phage head-tail adaptor	NA
UHGV-2137724_40	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2137724_41	UniRef90	UniRef90_UPI001A9B6FBF	HK97 gp10 family phage protein	NA
UHGV-2137724_41	eggNOG-mapper	1414720.CBYM010000040_gene1650	NA	NA
UHGV-2137724_41	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2137724_41	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-2137724_41	Structural annotation	TIGR01725	NA	NA
UHGV-2137724_42	Structural annotation	PF12691	NA	NA
UHGV-2137724_43	PHROG	phrog_885	major tail protein	tail
UHGV-2137724_43	UniRef90	UniRef90_UPI001C11708A	chitobiase/beta-hexosaminidase C-terminal domain-containing protein	NA
UHGV-2137724_43	eggNOG-mapper	1321814.HMPREF9089_00935	NA	NA
UHGV-2137724_43	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-2137724_44	eggNOG-mapper	1321778.HMPREF1982_03556	NA	NA
UHGV-2137724_46	PHROG	phrog_23464	NA	unknown function
UHGV-2137724_46	eggNOG-mapper	665950.HMPREF1025_02660	phage tail tape measure protein	NA
UHGV-2137724_46	COG	COG5283	Phage-related tail protein	NA
UHGV-2137724_46	Structural annotation	COG3941	NA	NA
UHGV-2137724_47	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-2137724_47	UniRef90	UniRef90_UPI00189E4294	phage tail family protein	NA
UHGV-2137724_47	eggNOG-mapper	1540257.JQMW01000009_gene3383	NA	NA
UHGV-2137724_47	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-2137724_47	COG	COG4722	Phage-related protein YomH	NA
UHGV-2137724_47	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-2137724_48	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-2137724_48	UniRef90	UniRef90_A0A1Y4NA30	Prophage_tail domain-containing protein	NA
UHGV-2137724_48	eggNOG-mapper	1160721.RBI_I01574	Prophage endopeptidase tail	NA
UHGV-2137724_48	COG	COG4926	Phage-related protein	NA
UHGV-2137724_48	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA