UHGV-2139567

Genome information

Genome length 39,470 bps

CDS count 38

Completeness 99.90% (high-quality)

geNomad score 0.9687

Prediction confidence Confident

Genome information
Genome ID	UHGV-2139567
vOTU ID	vOTU-009249
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029707\|Ga0245244_100017\|provirus_128406_167875
BioSample	NA
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	6
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9687
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	15.44
Jumbo phage	No

Genome content
Genome length	39,470 bps
GC content	38.29%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	38
CDS density	93.25%
Average CDS length	969.40 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2139567_1	KOfam	K06334	cotJC; spore coat protein JC	NA
UHGV-2139567_1	PHROG	phrog_7573	NA	unknown function
UHGV-2139567_1	UniRef90	UniRef90_R6Q8R9	Putative manganese catalase	NA
UHGV-2139567_1	eggNOG-mapper	693746.OBV_21890	Manganese containing catalase	NA
UHGV-2139567_1	Pfam	PF05067	Manganese containing catalase	Mn_catalase
UHGV-2139567_1	COG	COG3546	Mn-containing catalase (includes spore coat protein CotJC)	NA
UHGV-2139567_1	Structural annotation	PF05067, TIGR04535, COG3546	NA	NA
UHGV-2139567_2	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-2139567_2	PHROG	phrog_95	integrase	integration and excision
UHGV-2139567_2	UniRef90	UniRef90_A0A1Q6LBY2	Recombinase domain-containing protein	NA
UHGV-2139567_2	eggNOG-mapper	537013.CLOSTMETH_01697	Resolvase, N terminal domain	NA
UHGV-2139567_2	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-2139567_2	Pfam	PF07508	Recombinase	Recombinase
UHGV-2139567_2	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-2139567_2	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2139567_2	Structural annotation	PF00239, PF07508, PF13408, NF041201, COG1961	NA	NA
UHGV-2139567_3	UniRef90	UniRef90_R6Q652	Ig-like domain-containing surface protein	NA
UHGV-2139567_3	eggNOG-mapper	1163671.JAGI01000002_gene1685	Flagellar rod assembly protein muramidase FlgJ	NA
UHGV-2139567_3	NCBIFam	NF033223.2	YHYH domain-containing protein	NA
UHGV-2139567_3	COG	COG1705	Flagellum-specific peptidoglycan hydrolase FlgJ	NA
UHGV-2139567_4	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-2139567_4	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-2139567_4	UniRef90	UniRef90_R6RCD7	Toxin-antitoxin system antitoxin component HicB family	NA
UHGV-2139567_4	eggNOG-mapper	1235792.C808_03055	Toxin-antitoxin system, antitoxin component, HicB family	NA
UHGV-2139567_4	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-2139567_4	Structural annotation	PF15919, COG1598	NA	NA
UHGV-2139567_5	PHROG	phrog_5783	NA	unknown function
UHGV-2139567_5	UniRef90	UniRef90_R6QMT3	NYN domain-containing protein	NA
UHGV-2139567_5	eggNOG-mapper	1219581.HMPREF1628_01875	NYN domain	NA
UHGV-2139567_5	Pfam	PF01936	NYN domain	NYN
UHGV-2139567_5	COG	COG1432	NYN domain, predicted PIN-related RNAse, tRNA/rRNA maturation	NA
UHGV-2139567_5	Structural annotation	PF01936, TIGR00288, COG1432	NA	NA
UHGV-2139567_6	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-2139567_6	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-2139567_6	UniRef90	UniRef90_A0A3D4CBB2	XRE family transcriptional regulator	NA
UHGV-2139567_6	eggNOG-mapper	561177.ANHYDRO_01377	Peptidase S24-like	NA
UHGV-2139567_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2139567_6	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-2139567_6	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-2139567_6	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-2139567_7	UniRef90	UniRef90_A0A6A7K9R2	NA	NA
UHGV-2139567_7	eggNOG-mapper	1121335.Clst_0370	NA	NA
UHGV-2139567_7	Pfam	PF20432	Antitoxin Xre-like helix-turn-helix domain	Xre-like-HTH
UHGV-2139567_7	Structural annotation	PF05339, NF041951, COG1476	NA	NA
UHGV-2139567_8	PHROG	phrog_26314	NA	unknown function
UHGV-2139567_10	PHROG	phrog_1163	NA	unknown function
UHGV-2139567_10	UniRef90	UniRef90_R6RCD3	Putative phage replication protein	NA
UHGV-2139567_10	eggNOG-mapper	1397699.JNIS01000001_gene2447	Conserved phage C-terminus (Phg_2220_C)	NA
UHGV-2139567_10	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-2139567_10	NCBIFam	TIGR02220.1	phage conserved hypothetical protein, C-terminal domain	NA
UHGV-2139567_10	Structural annotation	PF09524, TIGR02220	NA	NA
UHGV-2139567_11	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-2139567_11	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2139567_11	UniRef90	UniRef90_R6QMS7	Single-stranded DNA-binding protein	NA
UHGV-2139567_11	eggNOG-mapper	718252.FP2_06770	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-2139567_11	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2139567_11	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-2139567_11	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2139567_11	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-2139567_11	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-2139567_12	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-2139567_12	PHROG	phrog_13621	NA	unknown function
UHGV-2139567_12	UniRef90	UniRef90_A0A3D4CBK7	DNA (cytosine-5-)-methyltransferase	NA
UHGV-2139567_12	eggNOG-mapper	1121334.KB911073_gene1852	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-2139567_12	PADLOC	MTase_II_00164	Type II methyltransferase	RM
UHGV-2139567_12	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-2139567_12	COG	COG0270	DNA-cytosine methylase	NA
UHGV-2139567_12	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-2139567_14	PHROG	phrog_10714	NA	unknown function
UHGV-2139567_14	eggNOG-mapper	1232453.BAIF02000134_gene1601	NA	NA
UHGV-2139567_16	UniRef90	UniRef90_UPI0019572D92	NA	NA
UHGV-2139567_16	eggNOG-mapper	397290.C810_05229	NA	NA
UHGV-2139567_16	Structural annotation	PF14359, MF_03036, NF004049, COG3613	NA	NA
UHGV-2139567_17	PHROG	phrog_34937	NA	unknown function
UHGV-2139567_19	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2139567_19	UniRef90	UniRef90_R6RCC6	Gp31	NA
UHGV-2139567_19	eggNOG-mapper	1415775.U729_1544	NA	NA
UHGV-2139567_19	Structural annotation	PF21578	NA	NA
UHGV-2139567_22	PHROG	phrog_1206	terminase small subunit	head and packaging
UHGV-2139567_23	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2139567_23	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-2139567_23	UniRef90	UniRef90_R6Q637	PBSX family phage terminase large subunit	NA
UHGV-2139567_23	eggNOG-mapper	1410650.JHWL01000003_gene2834	NA	NA
UHGV-2139567_23	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-2139567_23	COG	COG1783	Phage terminase large subunit	NA
UHGV-2139567_23	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-2139567_24	PHROG	phrog_156	portal protein	head and packaging
UHGV-2139567_24	eggNOG-mapper	1410650.JHWL01000003_gene2833	NA	NA
UHGV-2139567_24	Structural annotation	PF16510, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-2139567_25	KOfam	K07584	NA	NA
UHGV-2139567_25	PHROG	phrog_4478	peptidase	other
UHGV-2139567_25	UniRef90	UniRef90_R6QMR4	Predicted ribosomal protein	NA
UHGV-2139567_25	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-2139567_25	COG	COG2868	NA	NA
UHGV-2139567_25	Structural annotation	PF04327, NF011124, COG2868	NA	NA
UHGV-2139567_26	PHROG	phrog_13908	NA	unknown function
UHGV-2139567_26	eggNOG-mapper	1410650.JHWL01000003_gene2831	NA	NA
UHGV-2139567_27	PHROG	phrog_1357	major head protein	head and packaging
UHGV-2139567_27	UniRef90	UniRef90_A0A7G9GB60	N4-gp56 family major capsid protein	NA
UHGV-2139567_27	eggNOG-mapper	1410650.JHWL01000003_gene2830	NA	NA
UHGV-2139567_27	Pfam	PF13252	NA	DUF4043
UHGV-2139567_27	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-2139567_27	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-2139567_29	PHROG	phrog_12105	NA	unknown function
UHGV-2139567_30	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-2139567_30	eggNOG-mapper	1226322.HMPREF1545_00785	NA	NA
UHGV-2139567_30	Structural annotation	PF11134, MF_01348, NF038015, NF038128, COG3292	NA	NA
UHGV-2139567_32	eggNOG-mapper	1410650.JHWL01000003_gene2815	NA	NA
UHGV-2139567_34	PHROG	phrog_22978	NA	unknown function
UHGV-2139567_34	UniRef90	UniRef90_A0A416JVP5	PBECR5 domain-containing protein	NA
UHGV-2139567_34	eggNOG-mapper	1410650.JHWL01000003_gene2814	NA	NA
UHGV-2139567_34	Pfam	PF18798	Large polyvalent protein-associated domain 3	LPD3
UHGV-2139567_34	Pfam	PF18814	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease5	PBECR5
UHGV-2139567_35	KOfam	K07296	ADIPOQ, ACDC; adiponectin	NA
UHGV-2139567_35	PHROG	phrog_10972	tail fiber protein	tail
UHGV-2139567_35	UniRef90	UniRef90_R6QMQ6	Hep/Hag repeat protein	NA
UHGV-2139567_35	eggNOG-mapper	1160721.RBI_I01572	NA	NA
UHGV-2139567_35	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-2139567_35	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-2139567_35	Structural annotation	PF10651	NA	NA
UHGV-2139567_37	PHROG	phrog_1863	NA	unknown function
UHGV-2139567_37	eggNOG-mapper	718252.FP2_04900	NA	NA
UHGV-2139567_38	PHROG	phrog_8781	endolysin	lysis
UHGV-2139567_38	UniRef90	UniRef90_R6Q625	Lysin	NA
UHGV-2139567_38	eggNOG-mapper	1283338.Q4Z8Y9_BPTWO	Bacterial SH3 domain	NA
UHGV-2139567_38	Pfam	PF05257	CHAP domain	CHAP