UHGV-2140021

Genome information

vOTU vOTU-042076

Genome length 22,737 bps

CDS count 33

Completeness 66.51% (medium-quality)

geNomad score 0.9803

Prediction confidence Confident

Genome information
Genome ID	UHGV-2140021
vOTU ID	vOTU-042076
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029656\|Ga0245165_101021
BioSample	SAMEA3449217
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	66.51% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9803
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	30.86
Jumbo phage	No

Genome content
Genome length	22,737 bps
GC content	45.43%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	33
CDS density	94.41%
Average CDS length	655.91 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2140021_2	PHROG	phrog_16573	NA	unknown function
UHGV-2140021_2	UniRef90	UniRef90_UPI001967E4F4	BppU family phage baseplate upper protein	NA
UHGV-2140021_2	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-2140021_2	Structural annotation	PF10651	NA	NA
UHGV-2140021_3	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-2140021_3	UniRef90	UniRef90_UPI001968120D	phage tail protein	NA
UHGV-2140021_3	eggNOG-mapper	1123263.AUKY01000068_gene489	Phage minor structural protein	NA
UHGV-2140021_3	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-2140021_3	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-2140021_3	COG	COG4926	Phage-related protein	NA
UHGV-2140021_3	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-2140021_4	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-2140021_4	UniRef90	UniRef90_A0A1C6H6D2	Phage-related protein	NA
UHGV-2140021_4	eggNOG-mapper	1032362.F6K8S1_9CAUD	Phage tail protein	NA
UHGV-2140021_4	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-2140021_5	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-2140021_5	UniRef90	UniRef90_A0A1Y4R6K5	PhageMin_Tail domain-containing protein	NA
UHGV-2140021_5	eggNOG-mapper	1140001.I571_01843	phage tail tape measure protein	NA
UHGV-2140021_5	COG	COG5412	Phage-related protein	NA
UHGV-2140021_5	Structural annotation	PF20155, COG5280	NA	NA
UHGV-2140021_7	PHROG	phrog_88	major tail protein	tail
UHGV-2140021_7	UniRef90	UniRef90_G9YSC5	Phage major tail protein, phi13 family	NA
UHGV-2140021_7	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-2140021_7	COG	COG5492	NA	NA
UHGV-2140021_7	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-2140021_8	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2140021_8	UniRef90	UniRef90_A0A1C6FG30	Phage protein, HK97 gp10 family	NA
UHGV-2140021_8	eggNOG-mapper	908340.HMPREF9406_2573	NA	NA
UHGV-2140021_8	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-2140021_8	Structural annotation	TIGR01725	NA	NA
UHGV-2140021_9	PHROG	phrog_78	tail terminator	connector
UHGV-2140021_9	eggNOG-mapper	1232446.BAIE02000002_gene829	NA	NA
UHGV-2140021_9	Structural annotation	PF05657, COG3167	NA	NA
UHGV-2140021_10	PHROG	phrog_19734	NA	unknown function
UHGV-2140021_10	UniRef90	UniRef90_A0A316NL63	Head-tail adaptor protein	NA
UHGV-2140021_10	eggNOG-mapper	1232446.BAIE02000002_gene828	NA	NA
UHGV-2140021_10	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2140021_11	PHROG	phrog_2550	NA	unknown function
UHGV-2140021_11	UniRef90	UniRef90_UPI0008717716	phage head-tail connector protein	NA
UHGV-2140021_11	eggNOG-mapper	1226322.HMPREF1545_00117	NA	NA
UHGV-2140021_12	PHROG	phrog_10	major head protein	head and packaging
UHGV-2140021_12	UniRef90	UniRef90_UPI000679B959	phage major capsid protein	NA
UHGV-2140021_12	eggNOG-mapper	1226322.HMPREF1545_00116	phage major capsid protein, HK97 family	NA
UHGV-2140021_12	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2140021_12	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2140021_12	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2140021_12	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2140021_13	KOfam	K06904	NA	NA
UHGV-2140021_13	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-2140021_13	UniRef90	UniRef90_A0A0D8IYC2	HK97 family phage prohead protease	NA
UHGV-2140021_13	eggNOG-mapper	1226322.HMPREF1545_00115	Phage prohead protease, HK97 family	NA
UHGV-2140021_13	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-2140021_13	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-2140021_13	COG	COG3740	Phage head maturation protease	NA
UHGV-2140021_13	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-2140021_14	PHROG	phrog_12	portal protein	head and packaging
UHGV-2140021_14	UniRef90	UniRef90_A0A0D8IVL0	Phage portal protein	NA
UHGV-2140021_14	eggNOG-mapper	1226322.HMPREF1545_00114	Phage portal protein, HK97 family	NA
UHGV-2140021_14	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2140021_14	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-2140021_14	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2140021_14	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-2140021_15	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2140021_15	UniRef90	UniRef90_A0A0D8IV16	Terminase	NA
UHGV-2140021_15	eggNOG-mapper	1226322.HMPREF1545_00113	Phage Terminase	NA
UHGV-2140021_15	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2140021_15	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2140021_15	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2140021_15	Structural annotation	PF20441, PF03354, MF_04013, TIGR01547, COG4626	NA	NA
UHGV-2140021_16	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-2140021_16	UniRef90	UniRef90_A0A1C6H6I9	Phage terminase, small subunit	NA
UHGV-2140021_16	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-2140021_16	COG	COG3747	Phage terminase, small subunit	NA
UHGV-2140021_16	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-2140021_19	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2140021_19	Structural annotation	PF07374, TIGR01637	NA	NA
UHGV-2140021_20	UniRef90	UniRef90_UPI0019673783	helix-turn-helix domain-containing protein	NA
UHGV-2140021_20	Pfam	PF02796	Helix-turn-helix domain of resolvase	HTH_7
UHGV-2140021_22	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-2140021_22	UniRef90	UniRef90_A0A0U2WUA4	Phage-related protein	NA
UHGV-2140021_22	eggNOG-mapper	665956.HMPREF1032_03082	NA	NA
UHGV-2140021_23	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-2140021_23	eggNOG-mapper	1519439.JPJG01000059_gene1914	NA	NA
UHGV-2140021_23	Structural annotation	NF001611, COG1694	NA	NA
UHGV-2140021_25	PHROG	phrog_1934	NA	unknown function
UHGV-2140021_25	UniRef90	UniRef90_UPI0018AC0226	zinc-finger-containing protein	NA
UHGV-2140021_25	eggNOG-mapper	397290.C810_01488	zinc-finger-containing domain	NA
UHGV-2140021_25	Pfam	PF11672	zinc-finger-containing domain	DUF3268
UHGV-2140021_25	Structural annotation	PF11672	NA	NA
UHGV-2140021_26	PHROG	phrog_1384	Mom-like DNA modification protein	other
UHGV-2140021_26	eggNOG-mapper	665956.HMPREF1032_03086	COG NOG12663 non supervised orthologous group	NA
UHGV-2140021_26	Structural annotation	PF11124, MF_02210, NF040502, COG3818	NA	NA
UHGV-2140021_27	PHROG	phrog_38832	NA	unknown function
UHGV-2140021_27	eggNOG-mapper	665956.HMPREF1032_03087	NA	NA
UHGV-2140021_28	PHROG	phrog_757	DNA methyltransferase	other
UHGV-2140021_28	UniRef90	UniRef90_A0A371AZL8	DNA cytosine methyltransferase	NA
UHGV-2140021_28	eggNOG-mapper	748224.HMPREF9436_03069	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-2140021_28	COG	COG0270	DNA-cytosine methylase	NA
UHGV-2140021_28	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-2140021_31	UniRef90	UniRef90_A0A8D9PDK2	Zinc-ribbon containing domain	NA
UHGV-2140021_32	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-2140021_32	PHROG	phrog_67	DNA methyltransferase	other
UHGV-2140021_32	UniRef90	UniRef90_A0A3A6E967	Methyltransferase	NA
UHGV-2140021_32	eggNOG-mapper	910314.HMPREF9220_0636	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-2140021_32	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-2140021_32	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-2140021_32	COG	COG0863	DNA modification methylase	NA
UHGV-2140021_32	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA