UHGV-2140508

Genome information

Genome length 30,232 bps

CDS count 42

Completeness 87.26% (medium-quality)

geNomad score 0.9738

Prediction confidence Confident

Genome information
Genome ID	UHGV-2140508
vOTU ID	vOTU-021625
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029714\|Ga0245242_1001072\|provirus_831_31062
BioSample	SAMEA3449293
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	87.26% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9738
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	23.35
Jumbo phage	No

Genome content
Genome length	30,232 bps
GC content	56.12%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	42
CDS density	94.22%
Average CDS length	682.36 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2140508_2	UniRef90	UniRef90_UPI0013D15F81	NA	NA
UHGV-2140508_2	eggNOG-mapper	1284775.HMPREF1640_07275	NA	NA
UHGV-2140508_2	Pfam	PF12964	NA	DUF3853
UHGV-2140508_2	Structural annotation	PF12964, NF040990, COG3311	NA	NA
UHGV-2140508_6	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2140508_6	UniRef90	UniRef90_A0A2I7RVB8	ERF superfamily protein	NA
UHGV-2140508_6	eggNOG-mapper	585502.HMPREF0645_2601	Erf family	NA
UHGV-2140508_6	Pfam	PF04404	ERF superfamily	ERF
UHGV-2140508_6	Structural annotation	PF04404, COG4712	NA	NA
UHGV-2140508_7	PHROG	phrog_6244	NA	unknown function
UHGV-2140508_7	UniRef90	UniRef90_A6L492	PDDEXK_1 domain-containing protein	NA
UHGV-2140508_7	eggNOG-mapper	435590.BVU_2860	NA	NA
UHGV-2140508_7	Structural annotation	PF12705, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-2140508_8	eggNOG-mapper	1121100.JCM6294_521	NA	NA
UHGV-2140508_9	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-2140508_9	UniRef90	UniRef90_A0A345MTR6	NinB	NA
UHGV-2140508_9	eggNOG-mapper	1235788.C802_00052	NA	NA
UHGV-2140508_9	Structural annotation	PF05772, NF007281	NA	NA
UHGV-2140508_10	PHROG	phrog_16304	NA	unknown function
UHGV-2140508_10	UniRef90	UniRef90_A0A180FET1	NA	NA
UHGV-2140508_10	eggNOG-mapper	1122986.KB908329_gene2494	NA	NA
UHGV-2140508_10	Pfam	PF19808	NA	DUF6291
UHGV-2140508_11	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-2140508_11	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-2140508_11	UniRef90	UniRef90_UPI0018A0F687	replicative DNA helicase	NA
UHGV-2140508_11	eggNOG-mapper	1392488.JHZY01000002_gene191	DnaB-like helicase N terminal domain	NA
UHGV-2140508_11	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-2140508_11	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-2140508_11	COG	COG0305	Replicative DNA helicase	NA
UHGV-2140508_11	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-2140508_12	KOfam	K21919	KCTD9; BTB/POZ domain-containing protein KCTD9	NA
UHGV-2140508_12	PHROG	phrog_31265	NA	unknown function
UHGV-2140508_12	eggNOG-mapper	272563.CD630_29960	Pentapeptide repeat protein	NA
UHGV-2140508_12	Pfam	PF00805	Pentapeptide repeats (8 copies)	Pentapeptide
UHGV-2140508_12	Pfam	PF19062	NA	DUF5758
UHGV-2140508_12	COG	COG1357	NA	NA
UHGV-2140508_12	Structural annotation	PF19062, PF13599, NF011744, COG1357	NA	NA
UHGV-2140508_13	PHROG	phrog_15937	NA	unknown function
UHGV-2140508_13	eggNOG-mapper	742727.HMPREF9447_04879	NA	NA
UHGV-2140508_16	PHROG	phrog_8684	NA	unknown function
UHGV-2140508_16	UniRef90	UniRef90_UPI0011071E51	YopX family protein	NA
UHGV-2140508_16	eggNOG-mapper	762968.HMPREF9441_00543	YopX protein	NA
UHGV-2140508_16	Pfam	PF09643	YopX protein	YopX
UHGV-2140508_16	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-2140508_16	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-2140508_18	PHROG	phrog_10499	NA	unknown function
UHGV-2140508_18	Structural annotation	MF_00009	NA	NA
UHGV-2140508_20	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2140508_20	eggNOG-mapper	1235788.C802_00065	NA	NA
UHGV-2140508_20	Structural annotation	PF02075, MF_00034, NF000711, COG2410	NA	NA
UHGV-2140508_21	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-2140508_21	UniRef90	UniRef90_R6S335	Beta-galactoside alpha-2 3-sialyltransferase	NA
UHGV-2140508_21	eggNOG-mapper	1121101.HMPREF1532_02596	Helix-turn-helix of insertion element transposase	NA
UHGV-2140508_21	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-2140508_21	Structural annotation	PF07141	NA	NA
UHGV-2140508_22	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2140508_22	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-2140508_22	UniRef90	UniRef90_A0A352HNX3	PBSX family phage terminase large subunit	NA
UHGV-2140508_22	eggNOG-mapper	1227266.HMPREF1551_00524	Phage terminase, large subunit, PBSX family	NA
UHGV-2140508_22	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-2140508_22	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-2140508_22	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2140508_22	COG	COG1783	Phage terminase large subunit	NA
UHGV-2140508_22	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2140508_25	eggNOG-mapper	357276.EL88_08400	NA	NA
UHGV-2140508_26	Structural annotation	PF05632, PF17789, TIGR01633, COG4718	NA	NA
UHGV-2140508_27	eggNOG-mapper	1121286.AUMT01000001_gene49	NA	NA
UHGV-2140508_27	Structural annotation	NF033848, COG4379	NA	NA
UHGV-2140508_28	PHROG	phrog_24103	NA	unknown function
UHGV-2140508_28	eggNOG-mapper	1163671.JAGI01000002_gene1216	Phage Tail Collar Domain	NA
UHGV-2140508_28	COG	COG4675	Phage tail collar domain	NA
UHGV-2140508_29	Pfam	PF18998	Divergent InlB B-repeat domain	Flg_new_2
UHGV-2140508_30	PHROG	phrog_25337	tail length tape measure protein	tail
UHGV-2140508_30	eggNOG-mapper	709991.Odosp_2632	Phage-related minor tail protein	NA
UHGV-2140508_30	COG	COG5185	Chromosome segregation protein NDC80, interacts with SMC proteins	NA
UHGV-2140508_31	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-2140508_31	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-2140508_31	UniRef90	UniRef90_K1U006	Peptidase S14, ClpP	NA
UHGV-2140508_31	eggNOG-mapper	538979.C4ML05_9CAUD	Clp protease	NA
UHGV-2140508_31	Pfam	PF00574	Clp protease	CLP_protease
UHGV-2140508_31	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-2140508_32	PHROG	phrog_38780	NA	unknown function
UHGV-2140508_32	eggNOG-mapper	742767.HMPREF9456_03365	NA	NA
UHGV-2140508_32	Structural annotation	PF05065, MF_04119, NF033394, COG4653	NA	NA
UHGV-2140508_33	PHROG	phrog_21217	NA	unknown function
UHGV-2140508_33	eggNOG-mapper	1122981.AUME01000026_gene520	NA	NA
UHGV-2140508_35	PHROG	phrog_11226	portal protein	head and packaging
UHGV-2140508_35	UniRef90	UniRef90_A0A1V5IXK9	Phage portal protein	NA
UHGV-2140508_35	eggNOG-mapper	762984.HMPREF9445_00183	NA	NA
UHGV-2140508_35	Structural annotation	PF04860, MF_04135, TIGR01540, COG5518	NA	NA
UHGV-2140508_36	PHROG	phrog_24616	NA	unknown function
UHGV-2140508_36	eggNOG-mapper	1347393.HG726026_gene2530	NA	NA
UHGV-2140508_36	Structural annotation	PF20459	NA	NA
UHGV-2140508_38	UniRef90	UniRef90_UPI001B8BCCC9	phage holin family protein	NA
UHGV-2140508_38	eggNOG-mapper	445970.ALIPUT_01637	Bacteriophage holin family	NA
UHGV-2140508_38	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-2140508_39	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-2140508_39	PHROG	phrog_894	endolysin	lysis
UHGV-2140508_39	UniRef90	UniRef90_A0A3D3YIT1	Peptidase M15	NA
UHGV-2140508_39	eggNOG-mapper	1501391.LG35_04555	Peptidase M15	NA
UHGV-2140508_39	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-2140508_39	COG	COG3108	NA	NA
UHGV-2140508_39	Structural annotation	PF08291, COG3108	NA	NA
UHGV-2140508_41	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-2140508_41	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-2140508_41	UniRef90	UniRef90_A0A7W5H285	Putative RNA binding protein YcfA (HicA-like mRNA interferase family)	NA
UHGV-2140508_41	eggNOG-mapper	1121887.AUDK01000033_gene1450	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-2140508_41	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-2140508_41	Structural annotation	PF07927, COG1724	NA	NA
UHGV-2140508_42	UniRef90	UniRef90_UPI000917C5D0	helix-turn-helix domain-containing protein	NA
UHGV-2140508_42	eggNOG-mapper	1121887.AUDK01000033_gene1451	PFAM Uncharacterised protein family UPF0150	NA
UHGV-2140508_42	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2140508_42	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-2140508_42	Structural annotation	PF21748, NF041951, COG1598	NA	NA