UHGV-2141549

Genome information

Genome length 41,475 bps

CDS count 55

Completeness 99.90% (high-quality)

geNomad score 0.9745

Prediction confidence Confident

Genome information
Genome ID	UHGV-2141549
vOTU ID	vOTU-063606
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029710\|Ga0245233_100382\|provirus_15437_56911
BioSample	SAMEA3449285
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9745
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.12
Jumbo phage	No

Genome content
Genome length	41,475 bps
GC content	43.25%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	92.43%
Average CDS length	700.96 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2141549_1	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-2141549_1	PHROG	phrog_1	integrase	integration and excision
UHGV-2141549_1	UniRef90	UniRef90_A0A3R6E9I0	Site-specific integrase	NA
UHGV-2141549_1	eggNOG-mapper	706436.HMPREF9074_07003	Belongs to the 'phage' integrase family	NA
UHGV-2141549_1	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-2141549_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2141549_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2141549_1	Structural annotation	PF00589, PF13102, PF17293, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-2141549_2	eggNOG-mapper	1121101.HMPREF1532_02067	NA	NA
UHGV-2141549_2	Structural annotation	PF20200, NF038041, COG3126	NA	NA
UHGV-2141549_3	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-2141549_3	UniRef90	UniRef90_A0A0J6C9H5	Peptidase_S24 domain-containing protein	NA
UHGV-2141549_3	eggNOG-mapper	1122931.AUAE01000005_gene3284	Transcriptional regulator	NA
UHGV-2141549_3	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-2141549_3	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-2141549_3	Structural annotation	PF00717, PF12844, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-2141549_4	UniRef90	UniRef90_A0A6L5XB14	Helix-turn-helix transcriptional regulator	NA
UHGV-2141549_4	Structural annotation	PF13693, NF041951, COG1476	NA	NA
UHGV-2141549_5	KOfam	K07692	degU; two-component system, NarL family, response regulator DegU	NA
UHGV-2141549_5	PHROG	phrog_10300	transcriptional regulator	transcription regulation
UHGV-2141549_5	UniRef90	UniRef90_A0A015YH78	Bacterial regulatory s, luxR family protein	NA
UHGV-2141549_5	eggNOG-mapper	411901.BACCAC_02344	transcriptional regulator, LuxR family	NA
UHGV-2141549_5	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-2141549_5	COG	COG2197	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	NA
UHGV-2141549_5	Structural annotation	PF00196, MF_00674, NF011940, COG2771	NA	NA
UHGV-2141549_6	UniRef90	UniRef90_UPI000D109565	NA	NA
UHGV-2141549_6	eggNOG-mapper	1461577.CCMH01000040_gene192	NA	NA
UHGV-2141549_6	Pfam	PF12964	NA	DUF3853
UHGV-2141549_6	Structural annotation	PF12964, NF040990, COG3311	NA	NA
UHGV-2141549_9	PHROG	phrog_15768	NA	unknown function
UHGV-2141549_9	UniRef90	UniRef90_A0A414XJA7	NA	NA
UHGV-2141549_9	eggNOG-mapper	367737.Abu_1347	NA	NA
UHGV-2141549_9	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-2141549_9	Structural annotation	PF19808	NA	NA
UHGV-2141549_10	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-2141549_10	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-2141549_10	UniRef90	UniRef90_UPI001897BF9E	replicative DNA helicase	NA
UHGV-2141549_10	eggNOG-mapper	411901.BACCAC_00472	Participates in initiation and elongation during chromosome replication	NA
UHGV-2141549_10	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-2141549_10	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-2141549_10	NCBIFam	TIGR00665.1	replicative DNA helicase	NA
UHGV-2141549_10	COG	COG0305	Replicative DNA helicase	NA
UHGV-2141549_10	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-2141549_11	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2141549_11	UniRef90	UniRef90_A0A413IGE7	HNH endonuclease	NA
UHGV-2141549_11	eggNOG-mapper	203119.Cthe_1731	HNH endonuclease	NA
UHGV-2141549_11	Pfam	PF01844	HNH endonuclease	HNH
UHGV-2141549_11	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2141549_12	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-2141549_12	PHROG	phrog_1	integrase	integration and excision
UHGV-2141549_12	UniRef90	UniRef90_UPI001899FFB2	tyrosine-type recombinase/integrase	NA
UHGV-2141549_12	eggNOG-mapper	441768.ACL_0584	Belongs to the 'phage' integrase family	NA
UHGV-2141549_12	Pfam	PF02899	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_1
UHGV-2141549_12	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2141549_12	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-2141549_12	Structural annotation	PF00589, PF02899, MF_01807, NF001399, COG4974	NA	NA
UHGV-2141549_14	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-2141549_14	UniRef90	UniRef90_UPI001897D1F4	P27 family phage terminase small subunit	NA
UHGV-2141549_14	eggNOG-mapper	1433126.BN938_0084	Phage terminase, small subunit	NA
UHGV-2141549_14	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-2141549_14	COG	COG3747	Phage terminase, small subunit	NA
UHGV-2141549_14	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-2141549_15	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2141549_15	UniRef90	UniRef90_A0A3R6I174	Terminase large subunit	NA
UHGV-2141549_15	eggNOG-mapper	2754.EH55_13175	Terminase	NA
UHGV-2141549_15	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2141549_15	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2141549_15	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2141549_15	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-2141549_16	UniRef90	UniRef90_UPI00189D9B45	zinc finger-like domain-containing protein	NA
UHGV-2141549_16	eggNOG-mapper	585543.HMPREF0969_00705	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate	NA
UHGV-2141549_16	COG	COG0178	Excinuclease UvrABC ATPase subunit	NA
UHGV-2141549_16	Structural annotation	PF00684	NA	NA
UHGV-2141549_17	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-2141549_17	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2141549_17	UniRef90	UniRef90_R7JPX4	Single-stranded DNA-binding protein	NA
UHGV-2141549_17	eggNOG-mapper	203275.BFO_2907	Single-stranded DNA-binding protein	NA
UHGV-2141549_17	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2141549_17	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-2141549_17	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2141549_17	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-2141549_20	PHROG	phrog_3996	membrane protein	moron, auxiliary metabolic gene and host takeover
UHGV-2141549_20	UniRef90	UniRef90_UPI00189FA52E	NA	NA
UHGV-2141549_20	eggNOG-mapper	936573.HMPREF1147_0268	NA	NA
UHGV-2141549_20	Pfam	PF10097	NA	DUF2335
UHGV-2141549_20	COG	COG5346	NA	NA
UHGV-2141549_20	Structural annotation	PF10097, COG5346	NA	NA
UHGV-2141549_21	PHROG	phrog_518	Rha-like transcriptional regulator	transcription regulation
UHGV-2141549_21	UniRef90	UniRef90_R5UMV1	Putative antirepressor	NA
UHGV-2141549_21	eggNOG-mapper	90371.CY43_10725	Phage regulatory protein, Rha family	NA
UHGV-2141549_21	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-2141549_21	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-2141549_21	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-2141549_21	Structural annotation	PF09669, PF03374, TIGR02681, COG3646	NA	NA
UHGV-2141549_23	PHROG	phrog_9298	radical SAM domain protein	other
UHGV-2141549_23	UniRef90	UniRef90_UPI000E4781A9	radical SAM protein	NA
UHGV-2141549_23	eggNOG-mapper	762968.HMPREF9441_00539	radical SAM domain protein	NA
UHGV-2141549_23	COG	COG1032	Radical SAM superfamily enzyme YgiQ, UPF0313 family	NA
UHGV-2141549_23	Structural annotation	MF_01865, TIGR00089, COG0621	NA	NA
UHGV-2141549_24	KOfam	K02078	acpP; acyl carrier protein	NA
UHGV-2141549_24	PHROG	phrog_5934	acyl carrier protein	moron, auxiliary metabolic gene and host takeover
UHGV-2141549_24	eggNOG-mapper	1227739.Hsw_0046	Carrier of the growing fatty acid chain in fatty acid biosynthesis	NA
UHGV-2141549_24	Pfam	PF00550	Phosphopantetheine attachment site	PP-binding
UHGV-2141549_24	COG	COG0236	Acyl carrier protein	NA
UHGV-2141549_25	PHROG	phrog_801	endolysin; inhibits RNA polymerase	lysis
UHGV-2141549_25	UniRef90	UniRef90_J9GPW1	NA	NA
UHGV-2141549_25	eggNOG-mapper	881915.E1Y3U1_9CAUD	Cytidine and deoxycytidylate deaminase zinc-binding region	NA
UHGV-2141549_25	Pfam	PF18909	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
UHGV-2141549_25	Structural annotation	PF18909, PF08141, MF_00667, TIGR02861	NA	NA
UHGV-2141549_26	PHROG	phrog_32914	NA	unknown function
UHGV-2141549_27	KOfam	K07459	ybjD; putative ATP-dependent endonuclease of the OLD family	NA
UHGV-2141549_27	PHROG	phrog_21420	NA	unknown function
UHGV-2141549_27	UniRef90	UniRef90_A0A3E5BAM3	AAA_15 domain-containing protein	NA
UHGV-2141549_27	eggNOG-mapper	497965.Cyan7822_5205	AAA ATPase domain	NA
UHGV-2141549_27	PADLOC	AAA_15	NA	NA
UHGV-2141549_27	Pfam	PF13175	AAA ATPase domain	AAA_15
UHGV-2141549_27	COG	COG4637	Predicted ATPase	NA
UHGV-2141549_27	Structural annotation	PF11398, MF_00365, NF041760, COG4637	NA	NA
UHGV-2141549_28	eggNOG-mapper	709986.Deima_0479	NA	NA
UHGV-2141549_29	PHROG	phrog_12	portal protein	head and packaging
UHGV-2141549_29	UniRef90	UniRef90_A0A3R6HIU9	Phage portal protein	NA
UHGV-2141549_29	eggNOG-mapper	398512.JQKC01000005_gene5448	Phage portal protein, HK97 family	NA
UHGV-2141549_29	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2141549_29	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-2141549_29	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2141549_29	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-2141549_30	KOfam	K06904	NA	NA
UHGV-2141549_30	PHROG	phrog_617	major head protein	head and packaging
UHGV-2141549_30	UniRef90	UniRef90_UPI001898560D	HK97 family phage prohead protease	NA
UHGV-2141549_30	eggNOG-mapper	644968.DFW101_3507	Caudovirus prohead serine protease	NA
UHGV-2141549_30	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-2141549_30	COG	COG3740	Phage head maturation protease	NA
UHGV-2141549_30	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-2141549_31	PHROG	phrog_617	major head protein	head and packaging
UHGV-2141549_31	UniRef90	UniRef90_A0A3D8HAT7	Phage major capsid protein	NA
UHGV-2141549_31	eggNOG-mapper	547045.NEISICOT_01400	Phage capsid family	NA
UHGV-2141549_31	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2141549_31	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2141549_31	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2141549_31	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2141549_32	UniRef90	UniRef90_A0A413IG96	Helix-hairpin-helix domain-containing protein	NA
UHGV-2141549_32	Structural annotation	PF01281, PF14520	NA	NA
UHGV-2141549_33	UniRef90	UniRef90_A0A414XJC1	Phage gp6-like head-tail connector protein	NA
UHGV-2141549_33	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-2141549_33	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-2141549_34	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-2141549_34	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2141549_35	Structural annotation	PF09646	NA	NA
UHGV-2141549_36	eggNOG-mapper	1347393.HG726020_gene892	NA	NA
UHGV-2141549_36	Structural annotation	TIGR01725	NA	NA
UHGV-2141549_37	PHROG	phrog_1407	major tail protein	tail
UHGV-2141549_37	UniRef90	UniRef90_UPI000EE5B84C	phage tail tube protein	NA
UHGV-2141549_37	eggNOG-mapper	997884.HMPREF1068_00292	Phage tail tube protein	NA
UHGV-2141549_37	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-2141549_37	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2141549_38	eggNOG-mapper	997884.HMPREF1068_00293	NA	NA
UHGV-2141549_38	Structural annotation	PF19591	NA	NA
UHGV-2141549_40	PHROG	phrog_28	tail length tape measure protein	tail
UHGV-2141549_40	UniRef90	UniRef90_A0A316PAD9	Phage tail tape measure protein	NA
UHGV-2141549_40	eggNOG-mapper	411901.BACCAC_00724	Phage-related minor tail protein	NA
UHGV-2141549_40	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-2141549_40	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-2141549_40	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-2141549_41	PHROG	phrog_30639	NA	unknown function
UHGV-2141549_41	eggNOG-mapper	997884.HMPREF1068_00297	NA	NA
UHGV-2141549_41	Structural annotation	PF14594, TIGR03361, COG4379	NA	NA
UHGV-2141549_42	PHROG	phrog_21722	long tail fiber protein distal subunit	tail
UHGV-2141549_42	UniRef90	UniRef90_A0A414XJG6	Peptidase S74 domain-containing protein	NA
UHGV-2141549_42	eggNOG-mapper	1121930.AQXG01000012_gene3236	Hep Hag repeat protein	NA
UHGV-2141549_42	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-2141549_42	COG	COG2911	Autotransporter translocation and assembly protein TamB	NA
UHGV-2141549_42	Structural annotation	PF13884	NA	NA
UHGV-2141549_43	UniRef90	UniRef90_UPI000E4E677A	retropepsin-like domain-containing protein	NA
UHGV-2141549_43	eggNOG-mapper	481448.Minf_0064	gag-polyprotein putative aspartyl protease	NA
UHGV-2141549_43	Pfam	PF13650	Aspartyl protease	Asp_protease_2
UHGV-2141549_43	COG	COG3577	Predicted aspartyl protease	NA
UHGV-2141549_43	Structural annotation	PF08284, TIGR02281, COG5550	NA	NA
UHGV-2141549_47	Structural annotation	PF17994, NF038128	NA	NA
UHGV-2141549_48	Structural annotation	PF07603	NA	NA
UHGV-2141549_50	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-2141549_50	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-2141549_50	UniRef90	UniRef90_UPI000E5D0CAB	RNA-directed DNA polymerase	NA
UHGV-2141549_50	eggNOG-mapper	657309.BXY_08080	COG COG3344 Retron-type reverse transcriptase	NA
UHGV-2141549_50	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-2141549_50	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-2141549_50	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-2141549_50	Structural annotation	PF00078, MF_04065, TIGR04416, COG3344	NA	NA
UHGV-2141549_51	PHROG	phrog_27545	NA	unknown function
UHGV-2141549_51	eggNOG-mapper	1122971.BAME01000151_gene6566	NA	NA
UHGV-2141549_52	UniRef90	UniRef90_A0A1L5KZW2	NA	NA
UHGV-2141549_52	Structural annotation	PF06946	NA	NA
UHGV-2141549_53	PHROG	phrog_19698	NA	unknown function
UHGV-2141549_53	eggNOG-mapper	1235788.C802_00116	NA	NA
UHGV-2141549_54	PHROG	phrog_873	endolysin	head and packaging
UHGV-2141549_54	UniRef90	UniRef90_UPI001BA48547	structural protein P5	NA
UHGV-2141549_54	eggNOG-mapper	1235803.C825_05325	NA	NA
UHGV-2141549_55	PHROG	phrog_26448	NA	unknown function
UHGV-2141549_55	eggNOG-mapper	1235803.C825_05324	NA	NA
UHGV-2141549_55	Pfam	PF20647	NA	DUF6808
UHGV-2141549_55	Structural annotation	PF20647	NA	NA