UHGV-2141726

Genome information

Genome length 38,042 bps

CDS count 73

Completeness 90.33% (high-quality)

geNomad score 0.9830

Prediction confidence Confident

Genome information
Genome ID	UHGV-2141726
vOTU ID	vOTU-069619
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029708\|Ga0245189_100534\|provirus_1_38042
BioSample	SAMEA3449241
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	90.33% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9830
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	49.64
Jumbo phage	No

Genome content
Genome length	38,042 bps
GC content	54.64%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	73
CDS density	96.85%
Average CDS length	509.88 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2141726_1	UniRef90	UniRef90_A0A810PZI0	HTH cro/C1-type domain-containing protein	NA
UHGV-2141726_1	eggNOG-mapper	1122143.AUEG01000004_gene1250	Helix-turn-helix domain	NA
UHGV-2141726_1	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2141726_2	eggNOG-mapper	1235835.C814_03153	NA	NA
UHGV-2141726_2	Structural annotation	PF09035, NF040990	NA	NA
UHGV-2141726_3	Structural annotation	NF041247	NA	NA
UHGV-2141726_7	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2141726_7	UniRef90	UniRef90_A0A2Z4QBI4	AAA domain protein	NA
UHGV-2141726_7	eggNOG-mapper	445972.ANACOL_00146	AAA domain	NA
UHGV-2141726_7	Pfam	PF13479	AAA domain	AAA_24
UHGV-2141726_7	COG	COG1100	GTPase SAR1 family domain	NA
UHGV-2141726_7	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-2141726_8	UniRef90	UniRef90_A0A2Z4QA33	PD-(D/E)XK nuclease	NA
UHGV-2141726_8	eggNOG-mapper	718252.FP2_01050	NA	NA
UHGV-2141726_8	Structural annotation	PF10926, MF_03030, TIGR04328, COG4343	NA	NA
UHGV-2141726_9	PHROG	phrog_378	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2141726_9	UniRef90	UniRef90_UPI001E43F9BA	NA	NA
UHGV-2141726_9	eggNOG-mapper	1423732.BALS01000134_gene393	NA	NA
UHGV-2141726_9	Structural annotation	PF05037, NF004948	NA	NA
UHGV-2141726_10	PHROG	phrog_5810	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2141726_10	UniRef90	UniRef90_UPI00145BE7DD	NA	NA
UHGV-2141726_10	eggNOG-mapper	742740.HMPREF9474_03117	NA	NA
UHGV-2141726_10	Structural annotation	PF01475, NF006999, COG0735	NA	NA
UHGV-2141726_12	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-2141726_12	UniRef90	UniRef90_A0A1Q6JI14	Phosphoadenosine phosphosulfate reductase	NA
UHGV-2141726_12	eggNOG-mapper	1410628.JNKS01000054_gene544	NA	NA
UHGV-2141726_12	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-2141726_12	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-2141726_12	Structural annotation	PF01507, MF_01161, NF006327, COG0175	NA	NA
UHGV-2141726_13	PHROG	phrog_3136	NA	unknown function
UHGV-2141726_13	UniRef90	UniRef90_UPI001C00EDA4	ASCH domain-containing protein	NA
UHGV-2141726_13	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-2141726_13	Structural annotation	PF04266, MF_00684, NF008917, COG4933	NA	NA
UHGV-2141726_14	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-2141726_14	UniRef90	UniRef90_A0A413FXK8	NA	NA
UHGV-2141726_14	eggNOG-mapper	573061.Clocel_3558	NA	NA
UHGV-2141726_14	Pfam	PF14359	NA	DUF4406
UHGV-2141726_14	COG	COG3613	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-2141726_14	Structural annotation	PF14359, MF_03036, COG3613	NA	NA
UHGV-2141726_15	PHROG	phrog_38832	NA	unknown function
UHGV-2141726_15	eggNOG-mapper	665956.HMPREF1032_03087	NA	NA
UHGV-2141726_19	UniRef90	UniRef90_A0A1C6DFA0	FAD-dependent thymidylate synthase	NA
UHGV-2141726_19	eggNOG-mapper	397290.C810_01371	NA	NA
UHGV-2141726_19	Pfam	PF02511	Thymidylate synthase complementing protein	Thy1
UHGV-2141726_19	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-2141726_20	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2141726_20	eggNOG-mapper	536233.CLO_1822	NA	NA
UHGV-2141726_20	Structural annotation	PF02075, MF_00034, NF000711, COG0817	NA	NA
UHGV-2141726_21	PHROG	phrog_9300	NA	unknown function
UHGV-2141726_21	UniRef90	UniRef90_UPI001E4B013D	NA	NA
UHGV-2141726_25	PHROG	phrog_801	endolysin; inhibits RNA polymerase	lysis
UHGV-2141726_25	UniRef90	UniRef90_UPI000B35015B	NA	NA
UHGV-2141726_25	Pfam	PF18909	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
UHGV-2141726_25	Structural annotation	PF18909	NA	NA
UHGV-2141726_26	eggNOG-mapper	742738.HMPREF9460_02503	NA	NA
UHGV-2141726_26	Structural annotation	PF06530, MF_00674, TIGR01636, COG1342	NA	NA
UHGV-2141726_27	Structural annotation	PF10922, MF_00839	NA	NA
UHGV-2141726_28	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-2141726_28	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-2141726_28	UniRef90	UniRef90_A0A396NMY4	Terminase small subunit	NA
UHGV-2141726_28	eggNOG-mapper	476272.RUMHYD_01754	Terminase small subunit	NA
UHGV-2141726_28	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-2141726_28	COG	COG3728	Phage terminase, small subunit	NA
UHGV-2141726_28	Structural annotation	PF03592, COG3728	NA	NA
UHGV-2141726_29	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2141726_29	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-2141726_29	UniRef90	UniRef90_A0A2U1BEH4	PBSX family phage terminase large subunit	NA
UHGV-2141726_29	eggNOG-mapper	1123511.KB905868_gene187	Phage terminase large subunit	NA
UHGV-2141726_29	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-2141726_29	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-2141726_29	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2141726_29	COG	COG1783	Phage terminase large subunit	NA
UHGV-2141726_29	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2141726_30	PHROG	phrog_533	portal protein	head and packaging
UHGV-2141726_30	UniRef90	UniRef90_UPI0006C81717	phage portal protein	NA
UHGV-2141726_30	eggNOG-mapper	1226322.HMPREF1545_00044	NA	NA
UHGV-2141726_30	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2141726_30	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2141726_31	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2141726_31	UniRef90	UniRef90_A0A1C5N7V1	Phage minor capsid protein 2	NA
UHGV-2141726_31	eggNOG-mapper	1226322.HMPREF1545_00046	Phage minor capsid protein 2	NA
UHGV-2141726_31	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2141726_31	COG	COG2369	NA	NA
UHGV-2141726_31	Structural annotation	PF06152	NA	NA
UHGV-2141726_33	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-2141726_33	eggNOG-mapper	1226322.HMPREF1545_00049	NA	NA
UHGV-2141726_34	PHROG	phrog_10	major head protein	head and packaging
UHGV-2141726_34	UniRef90	UniRef90_A0A2U1BEF2	HK97 family phage major capsid protein	NA
UHGV-2141726_34	eggNOG-mapper	1226322.HMPREF1545_00050	Phage capsid family	NA
UHGV-2141726_34	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2141726_34	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2141726_34	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2141726_34	Structural annotation	PF05065, PF13620, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2141726_35	PHROG	phrog_541	head-tail adaptor	connector
UHGV-2141726_35	eggNOG-mapper	642492.Clole_0822	NA	NA
UHGV-2141726_36	PHROG	phrog_3366	NA	unknown function
UHGV-2141726_36	eggNOG-mapper	1226322.HMPREF1545_00053	NA	NA
UHGV-2141726_36	Pfam	PF20536	NA	DUF6751
UHGV-2141726_36	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-2141726_37	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2141726_37	UniRef90	UniRef90_UPI00195E1497	minor capsid protein	NA
UHGV-2141726_37	eggNOG-mapper	1226322.HMPREF1545_00054	Minor capsid protein	NA
UHGV-2141726_37	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-2141726_37	Structural annotation	PF11114	NA	NA
UHGV-2141726_38	PHROG	phrog_3266	tail completion	connector
UHGV-2141726_38	eggNOG-mapper	1232443.BAIA02000078_gene24	NA	NA
UHGV-2141726_38	Structural annotation	PF12691	NA	NA
UHGV-2141726_39	PHROG	phrog_3099	NA	unknown function
UHGV-2141726_39	eggNOG-mapper	1235797.C816_04186	NA	NA
UHGV-2141726_39	Structural annotation	TIGR02126	NA	NA
UHGV-2141726_40	PHROG	phrog_11299	NA	unknown function
UHGV-2141726_40	eggNOG-mapper	693746.OBV_18160	NA	NA
UHGV-2141726_40	Structural annotation	PF10666	NA	NA
UHGV-2141726_41	PHROG	phrog_706	NA	unknown function
UHGV-2141726_41	UniRef90	UniRef90_UPI000682A80B	Gp15 family bacteriophage protein	NA
UHGV-2141726_41	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-2141726_41	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-2141726_41	Structural annotation	PF06854	NA	NA
UHGV-2141726_42	PHROG	phrog_806	NA	unknown function
UHGV-2141726_42	UniRef90	UniRef90_UPI00137B5163	NA	NA
UHGV-2141726_42	eggNOG-mapper	397290.C810_05150	NA	NA
UHGV-2141726_42	Pfam	PF11611	NA	DUF4352
UHGV-2141726_42	Structural annotation	PF11611, PF06832, MF_00791, NF003967, COG2967	NA	NA
UHGV-2141726_43	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-2141726_43	UniRef90	UniRef90_A0A810PX76	Phage tail tape measure protein	NA
UHGV-2141726_43	eggNOG-mapper	1235797.C816_04182	SLT domain	NA
UHGV-2141726_43	COG	COG1511	NA	NA
UHGV-2141726_43	Structural annotation	PF05546, TIGR02559	NA	NA
UHGV-2141726_44	PHROG	phrog_1194	NA	unknown function
UHGV-2141726_44	eggNOG-mapper	411902.CLOBOL_00125	NA	NA
UHGV-2141726_44	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-2141726_45	PHROG	phrog_13879	NA	unknown function
UHGV-2141726_45	eggNOG-mapper	693746.OBV_18210	NA	NA
UHGV-2141726_45	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-2141726_46	Structural annotation	PF10651, NF038186	NA	NA
UHGV-2141726_49	PHROG	phrog_10898	NA	unknown function
UHGV-2141726_49	UniRef90	UniRef90_A0A7U3NJT3	Putative Ig-like domain-containing protein	NA
UHGV-2141726_49	eggNOG-mapper	717606.PaecuDRAFT_2136	S-layer homology domain	NA
UHGV-2141726_49	COG	COG1520	Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat	NA
UHGV-2141726_49	Structural annotation	PF19081, PF15418, MF_01905, NF032891, COG3291	NA	NA
UHGV-2141726_50	PHROG	phrog_10898	NA	unknown function
UHGV-2141726_50	Structural annotation	PF16408, NF033510	NA	NA
UHGV-2141726_52	PHROG	phrog_37900	NA	unknown function
UHGV-2141726_52	UniRef90	UniRef90_UPI001C3EA4DF	NA	NA
UHGV-2141726_52	eggNOG-mapper	552398.HMPREF0866_03098	NA	NA
UHGV-2141726_52	Pfam	PF19789	NA	DUF6273
UHGV-2141726_52	COG	COG3827	Cell pole-organizing protein PopZ	NA
UHGV-2141726_52	Structural annotation	PF19789	NA	NA
UHGV-2141726_53	PHROG	phrog_29409	NA	unknown function
UHGV-2141726_55	Structural annotation	PF14600	NA	NA
UHGV-2141726_56	PHROG	phrog_18725	NA	unknown function
UHGV-2141726_56	eggNOG-mapper	693746.OBV_18220	NA	NA
UHGV-2141726_57	Structural annotation	PF20055, MF_03008, NF010730, COG3940	NA	NA
UHGV-2141726_58	Pfam	PF07484	Phage Tail Collar Domain	Collar
UHGV-2141726_58	Structural annotation	PF07484	NA	NA
UHGV-2141726_61	PHROG	phrog_13256	NA	unknown function
UHGV-2141726_61	eggNOG-mapper	1226322.HMPREF1545_00166	NA	NA
UHGV-2141726_62	PHROG	phrog_14030	NA	unknown function
UHGV-2141726_62	UniRef90	UniRef90_R6LL81	SLH domain-containing protein	NA
UHGV-2141726_62	eggNOG-mapper	1121866.AUGK01000003_gene1444	amidase activity	NA
UHGV-2141726_62	COG	COG1705	Flagellum-specific peptidoglycan hydrolase FlgJ	NA
UHGV-2141726_63	Structural annotation	PF16509, MF_00245, NF001066, COG2739	NA	NA
UHGV-2141726_65	eggNOG-mapper	1160721.RBI_I00206	NA	NA
UHGV-2141726_65	Structural annotation	PF10723	NA	NA
UHGV-2141726_66	PHROG	phrog_3754	NA	unknown function
UHGV-2141726_66	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-2141726_67	PHROG	phrog_21718	NA	unknown function
UHGV-2141726_67	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-2141726_68	PHROG	phrog_22984	NA	unknown function
UHGV-2141726_69	PHROG	phrog_16490	NA	unknown function
UHGV-2141726_69	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-2141726_71	PHROG	phrog_20016	NA	unknown function
UHGV-2141726_71	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-2141726_71	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-2141726_71	Structural annotation	PF18573, NF033147	NA	NA
UHGV-2141726_72	Structural annotation	PF12510	NA	NA
UHGV-2141726_73	eggNOG-mapper	1226322.HMPREF1545_00079	NA	NA