UHGV-2141894

Genome information

Genome length 38,542 bps

CDS count 55

Completeness 99.90% (high-quality)

geNomad score 0.9717

Prediction confidence Confident

Genome information
Genome ID	UHGV-2141894
vOTU ID	vOTU-008508
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029608\|Ga0245152_100144\|provirus_15215_62136
BioSample	NA
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	18
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9717
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	48.98
Jumbo phage	No

Genome content
Genome length	38,542 bps
GC content	41.09%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	89.34%
Average CDS length	628.47 bps
tRNA count	3
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2141894_1	KOfam	K00059	fabG, OAR1; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]	NA
UHGV-2141894_1	PHROG	phrog_3142	FabG-like 3-oxoacyl-(acyl-carrier-protein) reductase	moron, auxiliary metabolic gene and host takeover
UHGV-2141894_1	UniRef90	UniRef90_A0A2N0UZ28	General stress protein 39	NA
UHGV-2141894_1	eggNOG-mapper	483218.BACPEC_02714	Enoyl-(Acyl carrier protein) reductase	NA
UHGV-2141894_1	Pfam	PF13561	Enoyl-(Acyl carrier protein) reductase	adh_short_C2
UHGV-2141894_1	COG	COG1028	NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family	NA
UHGV-2141894_1	Structural annotation	PF13561, MF_01647, NF004198, COG1028	NA	NA
UHGV-2141894_3	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2141894_3	PHROG	phrog_20388	endolysin	lysis
UHGV-2141894_3	UniRef90	UniRef90_A0A374N1L8	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2141894_3	eggNOG-mapper	1203606.HMPREF1526_00253	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2141894_3	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-2141894_3	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-2141894_3	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2141894_3	Structural annotation	PF01510, PF01476, PF15591, MF_02014, MF_04111, MF_01354, NF008758, NF010723, TIGR00405, COG3023, COG5004, COG2139	NA	NA
UHGV-2141894_4	PHROG	phrog_199	holin	lysis
UHGV-2141894_4	UniRef90	UniRef90_A0A2N0ULW7	Holin	NA
UHGV-2141894_4	eggNOG-mapper	1160721.RBI_I01565	Bacteriophage holin family	NA
UHGV-2141894_4	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-2141894_4	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-2141894_4	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-2141894_4	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-2141894_6	UniRef90	UniRef90_A0A1C6HHE5	BppU_N domain-containing protein	NA
UHGV-2141894_6	Structural annotation	PF01664	NA	NA
UHGV-2141894_7	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-2141894_8	PHROG	phrog_1194	NA	unknown function
UHGV-2141894_8	UniRef90	UniRef90_A0A8D9PDT1	YolD-like protein	NA
UHGV-2141894_8	eggNOG-mapper	1304866.K413DRAFT_3047	NA	NA
UHGV-2141894_8	Pfam	PF20458	NA	DUF6711
UHGV-2141894_8	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-2141894_9	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-2141894_9	UniRef90	UniRef90_A0A2N0UYY1	Phage-related protein	NA
UHGV-2141894_9	eggNOG-mapper	1160721.RBI_II00528	Phage tail tape measure protein, TP901 family	NA
UHGV-2141894_9	COG	COG1006	Multisubunit Na+/H+ antiporter, MnhC subunit	NA
UHGV-2141894_9	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-2141894_10	PHROG	phrog_5319	outer membrane protein	other
UHGV-2141894_10	UniRef90	UniRef90_A0A1Q6JN93	zinc_ribbon_2 domain-containing protein	NA
UHGV-2141894_10	eggNOG-mapper	1042156.CXIVA_15870	sh3 domain protein	NA
UHGV-2141894_10	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-2141894_10	COG	COG3103	NA	NA
UHGV-2141894_10	Structural annotation	PF03843, PF12773, MF_00984, TIGR00752, COG3065	NA	NA
UHGV-2141894_11	PHROG	phrog_8355	NA	unknown function
UHGV-2141894_11	UniRef90	UniRef90_UPI001C0B4BD8	Gp15 family bacteriophage protein	NA
UHGV-2141894_11	eggNOG-mapper	1262449.CP6013_3207	NA	NA
UHGV-2141894_12	PHROG	phrog_8300	NA	unknown function
UHGV-2141894_12	eggNOG-mapper	483218.BACPEC_01148	NA	NA
UHGV-2141894_12	Structural annotation	PF06854	NA	NA
UHGV-2141894_13	PHROG	phrog_820	major tail protein	tail
UHGV-2141894_13	eggNOG-mapper	1282664.H354_06691	NA	NA
UHGV-2141894_13	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2141894_14	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-2141894_14	UniRef90	UniRef90_UPI001D0627B3	minor capsid protein	NA
UHGV-2141894_14	eggNOG-mapper	1123263.AUKY01000051_gene1075	NA	NA
UHGV-2141894_14	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-2141894_14	Structural annotation	PF12691, COG5003	NA	NA
UHGV-2141894_15	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2141894_15	eggNOG-mapper	483218.BACPEC_01151	NA	NA
UHGV-2141894_16	PHROG	phrog_8710	NA	unknown function
UHGV-2141894_16	eggNOG-mapper	33035.JPJF01000093_gene2249	NA	NA
UHGV-2141894_16	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-2141894_17	eggNOG-mapper	483218.BACPEC_01153	NA	NA
UHGV-2141894_18	PHROG	phrog_422	major head protein	head and packaging
UHGV-2141894_18	UniRef90	UniRef90_UPI001C03381A	phage capsid protein	NA
UHGV-2141894_18	eggNOG-mapper	445972.ANACOL_01845	NA	NA
UHGV-2141894_18	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-2141894_19	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-2141894_19	eggNOG-mapper	1304866.K413DRAFT_0806	NA	NA
UHGV-2141894_20	PHROG	phrog_2616	NA	unknown function
UHGV-2141894_20	Structural annotation	PF01281	NA	NA
UHGV-2141894_21	PHROG	phrog_20195	NA	unknown function
UHGV-2141894_22	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2141894_22	UniRef90	UniRef90_A0A373KU77	Minor capsid protein	NA
UHGV-2141894_22	eggNOG-mapper	33035.JPJF01000093_gene2255	NA	NA
UHGV-2141894_22	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2141894_22	COG	COG5585	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	NA
UHGV-2141894_22	Structural annotation	PF06152	NA	NA
UHGV-2141894_23	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2141894_23	UniRef90	UniRef90_UPI000705333A	NUMOD4 domain-containing protein	NA
UHGV-2141894_23	eggNOG-mapper	357276.EL88_11520	HNH endonuclease domain protein	NA
UHGV-2141894_23	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-2141894_23	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-2141894_23	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-2141894_23	Pfam	PF07453	NUMOD1 domain	NUMOD1
UHGV-2141894_23	Structural annotation	PF07463, PF07453, TIGR01453	NA	NA
UHGV-2141894_25	UniRef90	UniRef90_A0A373KVZ7	CopG family transcriptional regulator	NA
UHGV-2141894_25	Structural annotation	PF01402, NF041793, COG4453	NA	NA
UHGV-2141894_26	PHROG	phrog_533	portal protein	head and packaging
UHGV-2141894_26	UniRef90	UniRef90_A0A3D0XB31	Capsid protein	NA
UHGV-2141894_26	eggNOG-mapper	742740.HMPREF9474_03501	NA	NA
UHGV-2141894_26	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2141894_27	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2141894_27	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-2141894_27	UniRef90	UniRef90_A0A374N1S8	Terminase	NA
UHGV-2141894_27	eggNOG-mapper	1282664.H354_06621	Phage terminase, large subunit, PBSX family	NA
UHGV-2141894_27	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-2141894_27	COG	COG1783	Phage terminase large subunit	NA
UHGV-2141894_27	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-2141894_28	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-2141894_28	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-2141894_28	UniRef90	UniRef90_UPI001897F57D	terminase small subunit	NA
UHGV-2141894_28	eggNOG-mapper	1256908.HMPREF0373_00489	Terminase small subunit	NA
UHGV-2141894_28	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-2141894_28	COG	COG3728	Phage terminase, small subunit	NA
UHGV-2141894_28	Structural annotation	PF03592, COG3728	NA	NA
UHGV-2141894_29	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2141894_29	UniRef90	UniRef90_A0A2N0UXQ6	NA	NA
UHGV-2141894_29	eggNOG-mapper	1401067.HMPREF0872_06835	NA	NA
UHGV-2141894_29	Pfam	PF07374	NA	DUF1492
UHGV-2141894_29	Structural annotation	PF07374, MF_00674, TIGR01636, COG2739	NA	NA
UHGV-2141894_33	UniRef90	UniRef90_UPI000E4DC4DA	helix-turn-helix domain-containing protein	NA
UHGV-2141894_33	Structural annotation	PF15597	NA	NA
UHGV-2141894_36	Structural annotation	PF02559, MF_00667, TIGR02861	NA	NA
UHGV-2141894_37	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-2141894_37	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2141894_37	UniRef90	UniRef90_A0A2N0UXU6	Holliday junction resolvase	NA
UHGV-2141894_37	eggNOG-mapper	411462.DORLON_00806	Endodeoxyribonuclease RusA	NA
UHGV-2141894_37	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-2141894_37	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-2141894_37	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-2141894_38	PHROG	phrog_16687	NA	unknown function
UHGV-2141894_38	eggNOG-mapper	1214217.ALNF01000014_gene1395	NA	NA
UHGV-2141894_39	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-2141894_39	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-2141894_39	UniRef90	UniRef90_A0A2N0UXP7	Regulatory protein RepA	NA
UHGV-2141894_39	eggNOG-mapper	394503.Ccel_3304	Primase C terminal 2 (PriCT-2)	NA
UHGV-2141894_39	Pfam	PF08707	Primase C terminal 2 (PriCT-2)	PriCT_2
UHGV-2141894_39	Pfam	PF13481	AAA domain	AAA_25
UHGV-2141894_39	COG	COG3598	RecA-family ATPase	NA
UHGV-2141894_39	Structural annotation	PF13481, PF16793, PF08220, MF_00350, MF_00700, NF006606, NF001641, COG3598, COG3285	NA	NA
UHGV-2141894_40	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-2141894_40	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2141894_40	UniRef90	UniRef90_A0A412ULZ3	ATP-dependent helicase	NA
UHGV-2141894_40	eggNOG-mapper	1235798.C817_03499	helicase superfamily c-terminal domain	NA
UHGV-2141894_40	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-2141894_40	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-2141894_40	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-2141894_40	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-2141894_40	Structural annotation	PF04851, PF16203, MF_01489, NF008521, COG1061	NA	NA
UHGV-2141894_41	PHROG	phrog_2698	NA	unknown function
UHGV-2141894_41	UniRef90	UniRef90_UPI000F54335B	NA	NA
UHGV-2141894_41	eggNOG-mapper	742723.HMPREF9477_00927	NA	NA
UHGV-2141894_41	Structural annotation	PF17426, NF005674	NA	NA
UHGV-2141894_42	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2141894_42	UniRef90	UniRef90_A0A2N0UXR5	Phage nucleotide-binding protein	NA
UHGV-2141894_42	eggNOG-mapper	1123304.AQYA01000037_gene196	AAA domain	NA
UHGV-2141894_42	Pfam	PF13479	AAA domain	AAA_24
UHGV-2141894_42	Structural annotation	PF13479, MF_00268, TIGR01618, COG0468	NA	NA
UHGV-2141894_44	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-2141894_44	PHROG	phrog_1499	NA	unknown function
UHGV-2141894_44	UniRef90	UniRef90_A0A2N0UXU2	Chromosome segregation protein	NA
UHGV-2141894_44	eggNOG-mapper	645991.Sgly_0320	domain protein	NA
UHGV-2141894_44	Pfam	PF13476	AAA domain	AAA_23
UHGV-2141894_44	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-2141894_44	Structural annotation	TIGR03185, COG5293	NA	NA
UHGV-2141894_46	UniRef90	UniRef90_A0A2N0ULT9	DNA binding domain, excisionase family	NA
UHGV-2141894_46	eggNOG-mapper	1283300.ATXB01000001_gene1737	DNA excision	NA
UHGV-2141894_46	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-2141894_46	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-2141894_46	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-2141894_46	Structural annotation	PF12728, NF040990, COG3311	NA	NA
UHGV-2141894_50	Structural annotation	PF11614, TIGR02588, COG2847	NA	NA
UHGV-2141894_51	UniRef90	UniRef90_A0A373XYJ8	XRE family transcriptional regulator	NA
UHGV-2141894_51	eggNOG-mapper	1121423.JONT01000002_gene2373	NA	NA
UHGV-2141894_51	Structural annotation	PF05339, NF041951, COG1396	NA	NA
UHGV-2141894_52	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-2141894_52	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-2141894_52	UniRef90	UniRef90_UPI0015F84BF4	XRE family transcriptional regulator	NA
UHGV-2141894_52	eggNOG-mapper	246199.CUS_5911	NA	NA
UHGV-2141894_52	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-2141894_52	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-2141894_52	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-2141894_52	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-2141894_54	KOfam	K07728	K07728; putative transcriptional regulator	NA
UHGV-2141894_54	PHROG	phrog_2439	transcriptional regulator	transcription regulation
UHGV-2141894_54	UniRef90	UniRef90_UPI00164BBB9D	XRE family transcriptional regulator	NA
UHGV-2141894_54	eggNOG-mapper	536233.CLO_1870	IrrE N-terminal-like domain	NA
UHGV-2141894_54	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2141894_54	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-2141894_54	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2141894_54	Structural annotation	PF06114, PF01381, MF_00584, NF038139, COG2856, COG1476	NA	NA
UHGV-2141894_55	KOfam	K14059	int; integrase	NA
UHGV-2141894_55	PHROG	phrog_1	integrase	integration and excision
UHGV-2141894_55	UniRef90	UniRef90_A0A2N0ULT2	Integrase	NA
UHGV-2141894_55	eggNOG-mapper	428125.CLOLEP_02743	Belongs to the 'phage' integrase family	NA
UHGV-2141894_55	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2141894_55	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-2141894_55	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA