UHGV-2142337

Genome information

Genome length 37,172 bps

CDS count 54

Completeness 99.90% (high-quality)

geNomad score 0.9772

Prediction confidence Confident

Genome information
Genome ID	UHGV-2142337
vOTU ID	vOTU-008234
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029696\|Ga0245263_100372\|provirus_15775_52946
BioSample	NA
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9772
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.59
Jumbo phage	No

Genome content
Genome length	37,172 bps
GC content	56.54%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	91.71%
Average CDS length	634.44 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2142337_1	eggNOG-mapper	1226322.HMPREF1545_00786	NA	NA
UHGV-2142337_2	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-2142337_2	eggNOG-mapper	1519439.JPJG01000060_gene1903	NA	NA
UHGV-2142337_2	Structural annotation	PF11134, TIGR03300, NF038126, COG1520	NA	NA
UHGV-2142337_4	PHROG	phrog_199	holin	lysis
UHGV-2142337_4	UniRef90	UniRef90_R5AQ05	Toxin secretion/phage lysis holin	NA
UHGV-2142337_4	eggNOG-mapper	742738.HMPREF9460_00365	Bacteriophage holin family	NA
UHGV-2142337_4	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-2142337_4	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-2142337_4	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-2142337_5	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2142337_5	PHROG	phrog_9611	endolysin	lysis
UHGV-2142337_5	UniRef90	UniRef90_R5B1Z3	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-2142337_5	eggNOG-mapper	97138.C820_00251	Ami_2	NA
UHGV-2142337_5	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-2142337_5	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-2142337_5	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-2142337_6	UniRef90	UniRef90_UPI001BF10870	Tyrosine-protein phosphatase	NA
UHGV-2142337_6	eggNOG-mapper	610130.Closa_0587	Tyrosine phosphatase family	NA
UHGV-2142337_6	Pfam	PF13350	Tyrosine phosphatase family	Y_phosphatase3
UHGV-2142337_6	COG	COG2365	Protein tyrosine/serine phosphatase Oca4	NA
UHGV-2142337_6	Structural annotation	PF13350, PF18998, PF17425, TIGR01244, COG2365	NA	NA
UHGV-2142337_7	PHROG	phrog_13589	NA	unknown function
UHGV-2142337_7	eggNOG-mapper	742733.HMPREF9469_05009	NA	NA
UHGV-2142337_8	PHROG	phrog_31538	NA	unknown function
UHGV-2142337_9	PHROG	phrog_15594	NA	unknown function
UHGV-2142337_9	eggNOG-mapper	1118055.CAGU01000013_gene763	NA	NA
UHGV-2142337_9	Structural annotation	PF16640, TIGR04488	NA	NA
UHGV-2142337_10	PHROG	phrog_6616	tail protein	tail
UHGV-2142337_10	Structural annotation	PF13550, PF09931, NF033848, COG3500	NA	NA
UHGV-2142337_11	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-2142337_12	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-2142337_12	UniRef90	UniRef90_A0A810PX76	Phage tail tape measure protein	NA
UHGV-2142337_12	eggNOG-mapper	1235797.C816_04182	SLT domain	NA
UHGV-2142337_12	COG	COG1511	NA	NA
UHGV-2142337_13	PHROG	phrog_706	NA	unknown function
UHGV-2142337_13	UniRef90	UniRef90_UPI00164D7633	Gp15 family bacteriophage protein	NA
UHGV-2142337_13	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-2142337_13	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-2142337_13	Structural annotation	PF06854	NA	NA
UHGV-2142337_14	PHROG	phrog_11299	NA	unknown function
UHGV-2142337_14	eggNOG-mapper	1449050.JNLE01000003_gene3883	NA	NA
UHGV-2142337_14	Structural annotation	PF10666	NA	NA
UHGV-2142337_15	PHROG	phrog_3099	NA	unknown function
UHGV-2142337_15	eggNOG-mapper	693746.OBV_18150	NA	NA
UHGV-2142337_15	Structural annotation	PF10772, TIGR02126, COG3499	NA	NA
UHGV-2142337_16	PHROG	phrog_3266	tail completion	connector
UHGV-2142337_16	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-2142337_16	Structural annotation	PF12691	NA	NA
UHGV-2142337_17	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2142337_17	UniRef90	UniRef90_A0A1H7MNM8	Minor capsid protein	NA
UHGV-2142337_17	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-2142337_17	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-2142337_17	Structural annotation	PF11114	NA	NA
UHGV-2142337_18	PHROG	phrog_3366	NA	unknown function
UHGV-2142337_18	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-2142337_19	PHROG	phrog_541	head-tail adaptor	connector
UHGV-2142337_19	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-2142337_20	PHROG	phrog_267	major head protein	head and packaging
UHGV-2142337_20	eggNOG-mapper	1235799.C818_04223	NA	NA
UHGV-2142337_20	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-2142337_21	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-2142337_21	UniRef90	UniRef90_UPI001C0EBA51	phage scaffolding protein	NA
UHGV-2142337_21	eggNOG-mapper	1539298.JO41_08210	Phage minor structural protein GP20	NA
UHGV-2142337_21	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-2142337_21	Structural annotation	PF06810	NA	NA
UHGV-2142337_22	PHROG	phrog_15041	NA	unknown function
UHGV-2142337_23	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2142337_23	UniRef90	UniRef90_A0A3D4T830	Phage capsid protein	NA
UHGV-2142337_23	eggNOG-mapper	476272.RUMHYD_01761	Phage minor capsid protein 2	NA
UHGV-2142337_23	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2142337_23	COG	COG2369	NA	NA
UHGV-2142337_23	Structural annotation	PF06152	NA	NA
UHGV-2142337_24	PHROG	phrog_533	portal protein	head and packaging
UHGV-2142337_24	UniRef90	UniRef90_A0A173TY48	Phage portal protein, putative, A118 family	NA
UHGV-2142337_24	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-2142337_24	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2142337_25	PHROG	phrog_1233	NA	unknown function
UHGV-2142337_25	eggNOG-mapper	1415774.U728_832	NA	NA
UHGV-2142337_25	Structural annotation	PF13058	NA	NA
UHGV-2142337_26	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2142337_26	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-2142337_26	UniRef90	UniRef90_A0A416S378	PBSX family phage terminase large subunit	NA
UHGV-2142337_26	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-2142337_26	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-2142337_26	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-2142337_26	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-2142337_26	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2142337_26	COG	COG1783	Phage terminase large subunit	NA
UHGV-2142337_26	Structural annotation	PF04466, PF17288, PF03592, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2142337_27	Structural annotation	PF10922, MF_00839	NA	NA
UHGV-2142337_28	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2142337_28	UniRef90	UniRef90_UPI001C10AB33	NA	NA
UHGV-2142337_28	eggNOG-mapper	428125.CLOLEP_01806	NA	NA
UHGV-2142337_28	Pfam	PF07374	NA	DUF1492
UHGV-2142337_28	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-2142337_30	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-2142337_30	UniRef90	UniRef90_A0A4U9RLZ8	NA	NA
UHGV-2142337_30	eggNOG-mapper	293826.Amet_2596	NA	NA
UHGV-2142337_30	Structural annotation	PF12643, MF_01020, TIGR03188	NA	NA
UHGV-2142337_31	Pfam	PF14359	NA	DUF4406
UHGV-2142337_32	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-2142337_32	PHROG	phrog_56	DNA methyltransferase	other
UHGV-2142337_32	UniRef90	UniRef90_R9MCP5	DNA adenine methylase	NA
UHGV-2142337_32	eggNOG-mapper	1235799.C818_02654	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-2142337_32	PADLOC	MTase_II_00030	Type II methyltransferase	RM
UHGV-2142337_32	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-2142337_32	COG	COG0338	DNA-adenine methylase	NA
UHGV-2142337_32	Structural annotation	PF02086, MF_01872, NF008152, COG0338	NA	NA
UHGV-2142337_33	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-2142337_33	PHROG	phrog_116	DNA methyltransferase	other
UHGV-2142337_33	UniRef90	UniRef90_A0A350THX9	DNA (cytosine-5-)-methyltransferase	NA
UHGV-2142337_33	eggNOG-mapper	1121334.KB911073_gene1852	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-2142337_33	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-2142337_33	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-2142337_33	COG	COG0270	DNA-cytosine methylase	NA
UHGV-2142337_33	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-2142337_34	eggNOG-mapper	1232449.BAHV02000016_gene1829	NA	NA
UHGV-2142337_35	KOfam	K03700	recU; recombination protein U	NA
UHGV-2142337_35	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2142337_35	UniRef90	UniRef90_A0A1H0W5Y9	Holliday junction resolvase RecU	NA
UHGV-2142337_35	eggNOG-mapper	537013.CLOSTMETH_01720	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-2142337_35	Pfam	PF03838	Recombination protein U	RecU
UHGV-2142337_35	COG	COG3331	Penicillin-binding protein-related factor A, putative recombinase	NA
UHGV-2142337_35	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-2142337_36	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2142337_36	eggNOG-mapper	411470.RUMGNA_02047	NA	NA
UHGV-2142337_36	Structural annotation	PF21578	NA	NA
UHGV-2142337_39	KOfam	K06284	abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes	NA
UHGV-2142337_39	PHROG	phrog_4681	antitoxin from a toxin-antitoxin system	moron, auxiliary metabolic gene and host takeover
UHGV-2142337_39	UniRef90	UniRef90_A0A841SSA0	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA
UHGV-2142337_39	eggNOG-mapper	1157490.EL26_11905	Antidote-toxin recognition MazE, bacterial antitoxin	NA
UHGV-2142337_39	Pfam	PF04014	Antidote-toxin recognition MazE, bacterial antitoxin	MazE_antitoxin
UHGV-2142337_39	NCBIFam	TIGR01439.1	transcriptional regulator, AbrB family	NA
UHGV-2142337_39	COG	COG2002	Bifunctional DNA-binding transcriptional regulator of stationary/sporulation/toxin gene expression and antitoxin component of the YhaV-PrlF toxin-antitoxin module	NA
UHGV-2142337_39	Structural annotation	PF15937, TIGR01439, NF004424, COG2002	NA	NA
UHGV-2142337_41	Pfam	PF10711	NA	DUF2513
UHGV-2142337_42	Structural annotation	PF13835, NF040858	NA	NA
UHGV-2142337_44	UniRef90	UniRef90_A0A357TPS2	DNA-binding protein	NA
UHGV-2142337_44	eggNOG-mapper	1347392.CCEZ01000005_gene1206	NA	NA
UHGV-2142337_47	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2142337_47	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-2142337_47	UniRef90	UniRef90_A0A0H5SHR8	HTH cro/C1-type domain-containing protein	NA
UHGV-2142337_47	eggNOG-mapper	1321784.HMPREF1987_01097	Helix-turn-helix XRE-family like proteins	NA
UHGV-2142337_47	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2142337_47	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2142337_47	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-2142337_48	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2142337_48	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-2142337_48	UniRef90	UniRef90_A0A354M9E0	HTH cro/C1-type domain-containing protein	NA
UHGV-2142337_48	eggNOG-mapper	1321784.HMPREF1987_01096	Peptidase S24-like	NA
UHGV-2142337_48	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2142337_48	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-2142337_49	PHROG	phrog_1914	NA	unknown function
UHGV-2142337_49	UniRef90	UniRef90_R6DVV5	Predicted Zn peptidase	NA
UHGV-2142337_49	eggNOG-mapper	1160721.RBI_I01604	NA	NA
UHGV-2142337_49	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-2142337_49	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-2142337_49	Structural annotation	PF06114, COG2856	NA	NA
UHGV-2142337_50	Structural annotation	PF18768, MF_02066, NF011886, COG5010	NA	NA
UHGV-2142337_51	PHROG	phrog_5783	NA	unknown function
UHGV-2142337_51	UniRef90	UniRef90_A0A1C7FL48	Nuclease	NA
UHGV-2142337_51	eggNOG-mapper	445971.ANASTE_00686	NYN domain	NA
UHGV-2142337_51	Pfam	PF01936	NYN domain	NYN
UHGV-2142337_51	COG	COG1432	NYN domain, predicted PIN-related RNAse, tRNA/rRNA maturation	NA
UHGV-2142337_51	Structural annotation	PF01936, TIGR00288, COG1432	NA	NA
UHGV-2142337_52	KOfam	K14059	int; integrase	NA
UHGV-2142337_52	PHROG	phrog_1	integrase	integration and excision
UHGV-2142337_52	UniRef90	UniRef90_UPI001958A27A	site-specific integrase	NA
UHGV-2142337_52	eggNOG-mapper	1203606.HMPREF1526_00215	Phage integrase family	NA
UHGV-2142337_52	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-2142337_52	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2142337_52	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2142337_52	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-2142337_53	UniRef90	UniRef90_UPI001C3B6330	Helix-turn-helix domain-containing protein	NA
UHGV-2142337_53	eggNOG-mapper	411471.SUBVAR_06067	NA	NA
UHGV-2142337_53	COG	COG3935	DNA replication protein DnaD	NA
UHGV-2142337_54	PHROG	phrog_428	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2142337_54	UniRef90	UniRef90_A0A1C5MUC8	NA	NA
UHGV-2142337_54	eggNOG-mapper	397287.C807_02704	NA	NA
UHGV-2142337_54	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-2142337_54	Pfam	PF19481	NA	DUF6017
UHGV-2142337_54	COG	COG3935	DNA replication protein DnaD	NA
UHGV-2142337_54	Structural annotation	PF19481, TIGR04176, COG3355	NA	NA