UHGV-2142382

Genome information

Genome length 26,542 bps

CDS count 39

Completeness 52.44% (medium-quality)

geNomad score 0.9751

Prediction confidence Confident

Genome information
Genome ID	UHGV-2142382
vOTU ID	vOTU-072765
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029681\|Ga0245167_100108\|provirus_103925_130466
BioSample	SAMEA3449219
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	52.44% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9751
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.52
Jumbo phage	No

Genome content
Genome length	26,542 bps
GC content	41.24%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	39
CDS density	94.50%
Average CDS length	647.39 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2142382_1	KOfam	K07271	licD; lipopolysaccharide cholinephosphotransferase [EC:2.7.8.-]	NA
UHGV-2142382_1	UniRef90	UniRef90_A0A3D3D7N5	Epimerase domain-containing protein	NA
UHGV-2142382_1	eggNOG-mapper	697329.Rumal_2992	LicD family	NA
UHGV-2142382_1	Pfam	PF01370	NAD dependent epimerase/dehydratase family	Epimerase
UHGV-2142382_1	Pfam	PF04991	LicD family	LicD
UHGV-2142382_1	COG	COG3475	Phosphorylcholine metabolism protein LicD	NA
UHGV-2142382_2	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-2142382_2	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-2142382_2	UniRef90	UniRef90_A0A413QHG2	XRE family transcriptional regulator	NA
UHGV-2142382_2	eggNOG-mapper	411471.SUBVAR_07446	helix-turn-helix	NA
UHGV-2142382_2	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-2142382_2	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-2142382_2	Structural annotation	PF13443, NF041951, COG3655	NA	NA
UHGV-2142382_3	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-2142382_3	PHROG	phrog_56	DNA methyltransferase	other
UHGV-2142382_3	UniRef90	UniRef90_A0A1C6HHY1	Site-specific DNA-methyltransferase (adenine-specific)	NA
UHGV-2142382_3	eggNOG-mapper	742733.HMPREF9469_02855	COG COG0338 Site-specific DNA methylase	NA
UHGV-2142382_3	PADLOC	MTase_II_00080	Type II methyltransferase	RM
UHGV-2142382_3	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-2142382_3	NCBIFam	TIGR00571.1	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA
UHGV-2142382_3	COG	COG0338	DNA-adenine methylase	NA
UHGV-2142382_3	Structural annotation	PF02086, MF_00934, TIGR00571, COG0338	NA	NA
UHGV-2142382_4	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2142382_4	PHROG	phrog_20388	endolysin	lysis
UHGV-2142382_4	UniRef90	UniRef90_A0A374N1L8	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2142382_4	eggNOG-mapper	1203606.HMPREF1526_00253	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2142382_4	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-2142382_4	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-2142382_4	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2142382_4	Structural annotation	PF01510, PF01476, PF15591, MF_02014, MF_04111, MF_01354, NF008758, NF010723, TIGR00405, COG3023, COG5004, COG2139	NA	NA
UHGV-2142382_5	PHROG	phrog_918	NA	unknown function
UHGV-2142382_5	UniRef90	UniRef90_UPI00164AB9AF	NA	NA
UHGV-2142382_5	eggNOG-mapper	1504823.CCMM01000008_gene1021	NA	NA
UHGV-2142382_5	Pfam	PF19791	NA	DUF6275
UHGV-2142382_5	Structural annotation	PF19791	NA	NA
UHGV-2142382_6	PHROG	phrog_199	holin	lysis
UHGV-2142382_6	UniRef90	UniRef90_A0A2N0ULW7	Holin	NA
UHGV-2142382_6	eggNOG-mapper	1160721.RBI_I01565	Bacteriophage holin family	NA
UHGV-2142382_6	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-2142382_6	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-2142382_6	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-2142382_6	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-2142382_8	UniRef90	UniRef90_A0A374N9Y2	NA	NA
UHGV-2142382_8	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-2142382_8	Structural annotation	PF10651, PF08931, TIGR02268	NA	NA
UHGV-2142382_9	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-2142382_9	UniRef90	UniRef90_A0A348ZBV6	Prophage_tail domain-containing protein	NA
UHGV-2142382_9	eggNOG-mapper	1160721.RBI_I01574	Prophage endopeptidase tail	NA
UHGV-2142382_9	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-2142382_9	COG	COG4926	Phage-related protein	NA
UHGV-2142382_9	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-2142382_10	UniRef90	UniRef90_A0A1G5CPA2	Phage-related protein	NA
UHGV-2142382_10	eggNOG-mapper	1246.JMEA01000006_gene51	phage tail	NA
UHGV-2142382_10	COG	COG4722	Phage-related protein YomH	NA
UHGV-2142382_10	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-2142382_11	PHROG	phrog_23464	NA	unknown function
UHGV-2142382_11	UniRef90	UniRef90_A0A1C6JGQ9	Phage-related minor tail protein	NA
UHGV-2142382_11	eggNOG-mapper	665950.HMPREF1025_02660	phage tail tape measure protein	NA
UHGV-2142382_11	COG	COG5283	Phage-related tail protein	NA
UHGV-2142382_11	Structural annotation	COG3941	NA	NA
UHGV-2142382_13	PHROG	phrog_1021	NA	unknown function
UHGV-2142382_14	PHROG	phrog_885	major tail protein	tail
UHGV-2142382_14	UniRef90	UniRef90_A0A101Y2E4	Big_5 domain-containing protein	NA
UHGV-2142382_14	eggNOG-mapper	1321814.HMPREF9089_00935	NA	NA
UHGV-2142382_14	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-2142382_15	Structural annotation	PF12691	NA	NA
UHGV-2142382_16	UniRef90	UniRef90_UPI001A9B6FBF	HK97 gp10 family phage protein	NA
UHGV-2142382_16	eggNOG-mapper	1414720.CBYM010000040_gene1650	NA	NA
UHGV-2142382_16	Structural annotation	TIGR01725	NA	NA
UHGV-2142382_17	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-2142382_17	UniRef90	UniRef90_A0A374MZF9	Phage head-tail adapter protein	NA
UHGV-2142382_17	eggNOG-mapper	1414720.CBYM010000040_gene1649	head-tail adaptor	NA
UHGV-2142382_17	COG	COG5614	Phage head-tail adaptor	NA
UHGV-2142382_17	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2142382_18	PHROG	phrog_5223	neck protein	connector
UHGV-2142382_18	eggNOG-mapper	931626.Awo_c31020	NA	NA
UHGV-2142382_18	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-2142382_18	Structural annotation	TIGR01560	NA	NA
UHGV-2142382_19	PHROG	phrog_10	major head protein	head and packaging
UHGV-2142382_19	UniRef90	UniRef90_A0A374N9V9	Phage major capsid protein	NA
UHGV-2142382_19	eggNOG-mapper	1280689.AUJC01000011_gene1521	Phage major capsid protein, HK97 family	NA
UHGV-2142382_19	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2142382_19	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2142382_19	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2142382_19	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2142382_20	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-2142382_20	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-2142382_20	UniRef90	UniRef90_A0A374NBM3	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-2142382_20	eggNOG-mapper	1203606.HMPREF1526_00979	Belongs to the peptidase S14 family	NA
UHGV-2142382_20	Pfam	PF00574	Clp protease	CLP_protease
UHGV-2142382_20	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-2142382_20	Structural annotation	PF00574, MF_00444, NF011091, COG0740	NA	NA
UHGV-2142382_21	PHROG	phrog_12	portal protein	head and packaging
UHGV-2142382_21	UniRef90	UniRef90_A0A374NAE1	Phage portal protein	NA
UHGV-2142382_21	eggNOG-mapper	626523.GCWU000342_01027	Portal protein	NA
UHGV-2142382_21	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2142382_21	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2142382_21	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-2142382_22	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2142382_22	UniRef90	UniRef90_A0A374NB45	Terminase large subunit	NA
UHGV-2142382_22	eggNOG-mapper	1235793.C809_01917	Phage Terminase	NA
UHGV-2142382_22	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2142382_22	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2142382_22	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2142382_22	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-2142382_23	PHROG	phrog_1066	NA	unknown function
UHGV-2142382_23	UniRef90	UniRef90_A0A0D0SQQ8	NA	NA
UHGV-2142382_23	eggNOG-mapper	1203606.HMPREF1526_00982	NA	NA
UHGV-2142382_24	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2142382_24	UniRef90	UniRef90_A0A374N9T6	HNH endonuclease	NA
UHGV-2142382_24	eggNOG-mapper	1235793.C809_01915	HNH endonuclease	NA
UHGV-2142382_24	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2142382_25	Structural annotation	PF02796, COG2771	NA	NA
UHGV-2142382_28	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-2142382_28	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2142382_28	UniRef90	UniRef90_A0A374N9T4	XRE family transcriptional regulator	NA
UHGV-2142382_28	eggNOG-mapper	717605.Theco_0106	Cro/C1-type HTH DNA-binding domain	NA
UHGV-2142382_28	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2142382_28	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-2142382_28	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-2142382_29	UniRef90	UniRef90_UPI000E4DC4DA	helix-turn-helix domain-containing protein	NA
UHGV-2142382_30	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-2142382_30	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-2142382_30	UniRef90	UniRef90_UPI001C034617	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-2142382_30	eggNOG-mapper	1408437.JNJN01000032_gene2312	Phosphoadenosine phosphosulfate reductase	NA
UHGV-2142382_30	PADLOC	BrxP_00001	BrxP	BREX
UHGV-2142382_30	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-2142382_30	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-2142382_30	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-2142382_33	PHROG	phrog_824	NA	unknown function
UHGV-2142382_33	UniRef90	UniRef90_A0A374MXE9	VRR-NUC domain-containing protein	NA
UHGV-2142382_33	eggNOG-mapper	1235792.C808_00622	VRR_NUC	NA
UHGV-2142382_33	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-2142382_33	Structural annotation	PF08774	NA	NA
UHGV-2142382_34	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-2142382_34	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-2142382_34	UniRef90	UniRef90_A0A374MYR7	IstB_IS21 domain-containing protein	NA
UHGV-2142382_34	eggNOG-mapper	1507.HMPREF0262_00302	Bacterial dnaA protein	NA
UHGV-2142382_34	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-2142382_34	COG	COG1484	DNA replication protein DnaC	NA
UHGV-2142382_34	Structural annotation	PF01695, MF_01158, NF005378, COG1484	NA	NA
UHGV-2142382_35	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2142382_35	UniRef90	UniRef90_A0A374NA85	NA	NA
UHGV-2142382_35	eggNOG-mapper	1235790.C805_00030	NA	NA
UHGV-2142382_35	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-2142382_35	COG	COG3935	DNA replication protein DnaD	NA
UHGV-2142382_35	Structural annotation	PF14297	NA	NA
UHGV-2142382_36	PHROG	phrog_398	NA	unknown function
UHGV-2142382_36	UniRef90	UniRef90_UPI000C7B20DA	putative HNHc nuclease	NA
UHGV-2142382_36	eggNOG-mapper	293826.Amet_2584	Putative HNHc nuclease	NA
UHGV-2142382_36	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-2142382_36	Structural annotation	PF16784	NA	NA
UHGV-2142382_37	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-2142382_37	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-2142382_37	UniRef90	UniRef90_A0A373XYI8	MBL fold metallo-hydrolase	NA
UHGV-2142382_37	eggNOG-mapper	888059.HMPREF9071_2100	Beta-lactamase superfamily domain	NA
UHGV-2142382_37	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-2142382_37	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-2142382_37	Structural annotation	PF12706, MF_01818, TIGR03307, COG1234	NA	NA
UHGV-2142382_38	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-2142382_38	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2142382_38	UniRef90	UniRef90_A0A374N9W0	Recombinase	NA
UHGV-2142382_38	eggNOG-mapper	428127.EUBDOL_01509	RecT family	NA
UHGV-2142382_38	Pfam	PF03837	RecT family	RecT
UHGV-2142382_38	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-2142382_38	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-2142382_38	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-2142382_39	eggNOG-mapper	1408437.JNJN01000039_gene373	NA	NA