UHGV-2142691

Genome information

vOTU vOTU-019146

Genome length 30,551 bps

CDS count 47

Completeness 88.14% (medium-quality)

geNomad score 0.9806

Prediction confidence Confident

Genome information
Genome ID	UHGV-2142691
vOTU ID	vOTU-019146
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029718\|Ga0245237_1000442\|provirus_2_30552
BioSample	SAMEA3449289
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	88.14% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9806
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	50.88
Jumbo phage	No

Genome content
Genome length	30,551 bps
GC content	60.45%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	93.10%
Average CDS length	611.81 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2142691_1	PHROG	phrog_9534	head protein	head and packaging
UHGV-2142691_1	UniRef90	UniRef90_Q73EE6	Phage structural protein, truncation	NA
UHGV-2142691_1	eggNOG-mapper	748224.HMPREF9436_03323	COG NOG18825 non supervised orthologous group	NA
UHGV-2142691_1	Structural annotation	PF20747	NA	NA
UHGV-2142691_2	PHROG	phrog_538	minor tail protein	tail
UHGV-2142691_2	UniRef90	UniRef90_UPI001899858F	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-2142691_2	eggNOG-mapper	748224.HMPREF9436_03324	NA	NA
UHGV-2142691_2	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-2142691_2	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-2142691_3	PHROG	phrog_36410	NA	unknown function
UHGV-2142691_3	UniRef90	UniRef90_UPI00130E98E0	phage tail family protein	NA
UHGV-2142691_3	eggNOG-mapper	748224.HMPREF9436_03325	Phage tail protein	NA
UHGV-2142691_3	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-2142691_4	PHROG	phrog_28775	tail length tape measure protein	tail
UHGV-2142691_4	UniRef90	UniRef90_E2ZNP7	Phage tail tape measure protein, TP901 family	NA
UHGV-2142691_4	eggNOG-mapper	748224.HMPREF9436_03326	Phage tail tape measure protein, TP901 family	NA
UHGV-2142691_4	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-2142691_4	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-2142691_4	COG	COG5283	Phage-related tail protein	NA
UHGV-2142691_4	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-2142691_5	PHROG	phrog_706	NA	unknown function
UHGV-2142691_5	UniRef90	UniRef90_E2ZNP9	Bacteriophage Gp15 protein	NA
UHGV-2142691_5	eggNOG-mapper	748224.HMPREF9436_03328	Bacteriophage Gp15 protein	NA
UHGV-2142691_5	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-2142691_5	Structural annotation	PF06854	NA	NA
UHGV-2142691_6	PHROG	phrog_4450	NA	unknown function
UHGV-2142691_6	Structural annotation	PF20378	NA	NA
UHGV-2142691_7	PHROG	phrog_820	major tail protein	tail
UHGV-2142691_7	eggNOG-mapper	748224.HMPREF9436_03330	NA	NA
UHGV-2142691_7	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2142691_8	PHROG	phrog_3266	tail completion	connector
UHGV-2142691_8	eggNOG-mapper	748224.HMPREF9436_03331	NA	NA
UHGV-2142691_8	Structural annotation	PF12691	NA	NA
UHGV-2142691_9	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2142691_9	UniRef90	UniRef90_A0A2A6Z736	Capsid protein	NA
UHGV-2142691_9	eggNOG-mapper	748224.HMPREF9436_03332	Minor capsid protein	NA
UHGV-2142691_9	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-2142691_9	Structural annotation	PF11114	NA	NA
UHGV-2142691_10	PHROG	phrog_3366	NA	unknown function
UHGV-2142691_10	Pfam	PF20536	NA	DUF6751
UHGV-2142691_10	Structural annotation	PF20536	NA	NA
UHGV-2142691_11	PHROG	phrog_541	head-tail adaptor	connector
UHGV-2142691_12	PHROG	phrog_267	major head protein	head and packaging
UHGV-2142691_12	UniRef90	UniRef90_A0A4P8IA69	Phage capsid and scaffold	NA
UHGV-2142691_12	eggNOG-mapper	748224.HMPREF9436_03335	NA	NA
UHGV-2142691_12	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-2142691_13	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-2142691_13	UniRef90	UniRef90_D4K444	Phage minor structural protein GP20	NA
UHGV-2142691_13	eggNOG-mapper	748224.HMPREF9436_03336	Phage minor structural protein GP20	NA
UHGV-2142691_13	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-2142691_13	Structural annotation	PF06810	NA	NA
UHGV-2142691_15	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-2142691_15	UniRef90	UniRef90_A0A373Q857	YopX domain-containing protein	NA
UHGV-2142691_15	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-2142691_17	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2142691_17	UniRef90	UniRef90_A0A1C5NZK4	Phage minor capsid protein 2	NA
UHGV-2142691_17	eggNOG-mapper	748224.HMPREF9436_03339	NA	NA
UHGV-2142691_17	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2142691_17	COG	COG2369	NA	NA
UHGV-2142691_17	Structural annotation	PF06152	NA	NA
UHGV-2142691_18	PHROG	phrog_533	portal protein	head and packaging
UHGV-2142691_18	UniRef90	UniRef90_A0A7G9WF85	Phage portal protein	NA
UHGV-2142691_18	eggNOG-mapper	718252.FP2_06700	NA	NA
UHGV-2142691_18	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2142691_18	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2142691_19	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2142691_19	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-2142691_19	UniRef90	UniRef90_A0A844EGH8	PBSX family phage terminase large subunit	NA
UHGV-2142691_19	eggNOG-mapper	1449050.JNLE01000003_gene3895	phage terminase, large subunit, PBSX family	NA
UHGV-2142691_19	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-2142691_19	COG	COG1783	Phage terminase large subunit	NA
UHGV-2142691_19	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2142691_20	PHROG	phrog_2412	NA	unknown function
UHGV-2142691_20	UniRef90	UniRef90_UPI000DE85101	stress-induced protein	NA
UHGV-2142691_20	eggNOG-mapper	742738.HMPREF9460_02504	NA	NA
UHGV-2142691_21	Structural annotation	PF07374, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-2142691_24	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2142691_24	UniRef90	UniRef90_UPI001159D907	Holliday junction resolvase RecU	NA
UHGV-2142691_24	eggNOG-mapper	929506.CbC4_1203	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-2142691_24	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-2142691_25	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-2142691_25	UniRef90	UniRef90_A0A291T890	DnaB_2 domain-containing protein	NA
UHGV-2142691_25	eggNOG-mapper	665956.HMPREF1032_02617	Phage replisome organizer, N-terminal domain protein	NA
UHGV-2142691_25	COG	COG3935	DNA replication protein DnaD	NA
UHGV-2142691_25	Structural annotation	PF09681, MF_01819, TIGR01714, TIGR01446, COG3935	NA	NA
UHGV-2142691_26	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-2142691_26	UniRef90	UniRef90_UPI001CBB85F6	single-stranded DNA-binding protein	NA
UHGV-2142691_26	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2142691_26	Structural annotation	PF00436, MF_00720, NF004512, COG0629	NA	NA
UHGV-2142691_27	PHROG	phrog_2760	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2142691_27	UniRef90	UniRef90_A0A2A7BH07	Phage recombination protein Bet	NA
UHGV-2142691_27	eggNOG-mapper	1235794.C811_01355	RecT family	NA
UHGV-2142691_27	Pfam	PF03837	RecT family	RecT
UHGV-2142691_27	NCBIFam	TIGR01913.1	phage recombination protein Bet	NA
UHGV-2142691_27	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-2142691_27	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-2142691_28	PHROG	phrog_674	NA	unknown function
UHGV-2142691_28	UniRef90	UniRef90_A0A3A6E846	NA	NA
UHGV-2142691_28	eggNOG-mapper	556268.OFAG_00840	NA	NA
UHGV-2142691_28	Pfam	PF07083	NA	DUF1351
UHGV-2142691_28	Structural annotation	PF07083	NA	NA
UHGV-2142691_29	PHROG	phrog_38771	NA	unknown function
UHGV-2142691_30	PHROG	phrog_1733	NA	unknown function
UHGV-2142691_30	eggNOG-mapper	398512.JQKC01000009_gene428	DNA binding	NA
UHGV-2142691_30	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-2142691_30	Structural annotation	PF03677	NA	NA
UHGV-2142691_32	Structural annotation	PF07875, TIGR02501	NA	NA
UHGV-2142691_34	PHROG	phrog_32852	NA	unknown function
UHGV-2142691_35	UniRef90	UniRef90_UPI000F0633F9	DNA-binding protein	NA
UHGV-2142691_35	eggNOG-mapper	693746.OBV_43260	NA	NA
UHGV-2142691_35	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-2142691_36	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-2142691_36	UniRef90	UniRef90_D4K457	Prophage antirepressor	NA
UHGV-2142691_36	eggNOG-mapper	718252.FP2_06840	BRO family, N-terminal domain	NA
UHGV-2142691_36	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-2142691_36	COG	COG3617	Prophage antirepressor	NA
UHGV-2142691_36	Structural annotation	PF02498, TIGR02681, COG3617	NA	NA
UHGV-2142691_37	Structural annotation	PF07378, MF_00783, COG5443	NA	NA
UHGV-2142691_39	UniRef90	UniRef90_UPI001D0EF465	BC1881 family protein	NA
UHGV-2142691_42	UniRef90	UniRef90_A0A8I0L7B6	NA	NA
UHGV-2142691_42	eggNOG-mapper	626523.GCWU000342_01049	NA	NA
UHGV-2142691_42	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2142691_42	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-2142691_42	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-2142691_43	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-2142691_43	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-2142691_43	UniRef90	UniRef90_UPI001C021C25	helix-turn-helix domain-containing protein	NA
UHGV-2142691_43	eggNOG-mapper	411473.RUMCAL_03095	NA	NA
UHGV-2142691_43	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2142691_43	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-2142691_43	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-2142691_43	Structural annotation	PF00717, PF12844, MF_00015, TIGR00498, TIGR03070, COG1974, COG1476	NA	NA
UHGV-2142691_44	PHROG	phrog_585	NA	unknown function
UHGV-2142691_44	UniRef90	UniRef90_UPI0011C834AA	NA	NA
UHGV-2142691_44	eggNOG-mapper	1262449.CP6013_2263	NA	NA
UHGV-2142691_44	Pfam	PF10711	NA	DUF2513
UHGV-2142691_44	Structural annotation	PF10711, TIGR04176, COG1695	NA	NA
UHGV-2142691_46	KOfam	K14059	int; integrase	NA
UHGV-2142691_46	PHROG	phrog_1	integrase	integration and excision
UHGV-2142691_46	UniRef90	UniRef90_A0A0W7TNE8	Tyr recombinase domain-containing protein	NA
UHGV-2142691_46	eggNOG-mapper	1235835.C814_03141	Belongs to the 'phage' integrase family	NA
UHGV-2142691_46	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-2142691_46	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2142691_46	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2142691_46	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-2142691_47	KOfam	K07699	spo0A; two-component system, response regulator, stage 0 sporulation protein A	NA
UHGV-2142691_47	UniRef90	UniRef90_A0A291T8I8	Spo0A_C domain-containing protein	NA
UHGV-2142691_47	eggNOG-mapper	1226322.HMPREF1545_01110	Sporulation initiation factor Spo0A C terminal	NA
UHGV-2142691_47	Pfam	PF08769	Sporulation initiation factor Spo0A C terminal	Spo0A_C
UHGV-2142691_47	COG	COG2197	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	NA
UHGV-2142691_47	Structural annotation	PF08769, TIGR02875	NA	NA