UHGV-2143102

Genome information

Genome length 38,100 bps

CDS count 49

Completeness 93.60% (high-quality)

geNomad score 0.9791

Prediction confidence Confident

Genome information
Genome ID	UHGV-2143102
vOTU ID	vOTU-011061
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029750\|Ga0242832_100117\|provirus_47493_85592
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	93.60% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9791
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	59.45
Jumbo phage	No

Genome content
Genome length	38,100 bps
GC content	42.53%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	91.12%
Average CDS length	711.55 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2143102_1	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2143102_1	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2143102_1	UniRef90	UniRef90_A0A173UV29	HTH-type transcriptional regulator immR	NA
UHGV-2143102_1	eggNOG-mapper	1123302.KB904159_gene1259	Transcriptional	NA
UHGV-2143102_1	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2143102_1	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2143102_1	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-2143102_2	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2143102_2	PHROG	phrog_2742	endolysin	lysis
UHGV-2143102_2	UniRef90	UniRef90_A0A845KJG7	MurNAc-LAA domain-containing protein	NA
UHGV-2143102_2	eggNOG-mapper	411462.DORLON_00764	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2143102_2	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-2143102_2	Pfam	PF07538	Clostridial hydrophobic W	ChW
UHGV-2143102_2	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2143102_2	Structural annotation	PF01520, TIGR02883, COG5492, COG0860	NA	NA
UHGV-2143102_3	PHROG	phrog_199	holin	lysis
UHGV-2143102_3	UniRef90	UniRef90_A0A173VKF9	Holin	NA
UHGV-2143102_3	eggNOG-mapper	1232453.BAIF02000059_gene1615	Bacteriophage holin family	NA
UHGV-2143102_3	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-2143102_3	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-2143102_3	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-2143102_3	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-2143102_4	eggNOG-mapper	641107.CDLVIII_1197	NA	NA
UHGV-2143102_5	KOfam	K06236	COL1A; collagen type I alpha	NA
UHGV-2143102_5	PHROG	phrog_588	tail fiber protein and host specificity	tail
UHGV-2143102_5	UniRef90	UniRef90_A0A173RE19	Phage minor structural protein, N-terminal region	NA
UHGV-2143102_5	eggNOG-mapper	556261.HMPREF0240_01281	cellulase activity	NA
UHGV-2143102_5	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-2143102_5	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-2143102_5	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-2143102_5	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-2143102_5	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-2143102_6	PHROG	phrog_202	distal tail protein Dit	tail
UHGV-2143102_6	UniRef90	UniRef90_A0A173RD59	Phage-related protein	NA
UHGV-2143102_6	eggNOG-mapper	556261.HMPREF0240_01280	Phage tail protein	NA
UHGV-2143102_6	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-2143102_6	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-2143102_6	COG	COG4722	Phage-related protein YomH	NA
UHGV-2143102_6	Structural annotation	PF05709, PF21708, TIGR01633, NF041449, COG4722, COG3506	NA	NA
UHGV-2143102_7	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-2143102_7	PHROG	phrog_19074	NA	unknown function
UHGV-2143102_7	UniRef90	UniRef90_A0A173RDD3	Phage-related protein	NA
UHGV-2143102_7	eggNOG-mapper	411461.DORFOR_01175	phage tail tape measure protein	NA
UHGV-2143102_7	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-2143102_7	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-2143102_7	COG	COG5280	Phage-related minor tail protein	NA
UHGV-2143102_7	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-2143102_8	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-2143102_8	UniRef90	UniRef90_A0A173RCX1	Phage tail tape measure protein	NA
UHGV-2143102_8	eggNOG-mapper	411461.DORFOR_01175	phage tail tape measure protein	NA
UHGV-2143102_8	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-2143102_8	COG	COG5280	Phage-related minor tail protein	NA
UHGV-2143102_9	PHROG	phrog_706	NA	unknown function
UHGV-2143102_9	UniRef90	UniRef90_A0A173RDK1	Bacteriophage Gp15 protein	NA
UHGV-2143102_9	eggNOG-mapper	411461.DORFOR_01174	Bacteriophage Gp15 protein	NA
UHGV-2143102_9	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-2143102_9	Structural annotation	PF06854	NA	NA
UHGV-2143102_10	PHROG	phrog_4450	NA	unknown function
UHGV-2143102_10	UniRef90	UniRef90_A0A7X3SKC0	AP endonuclease	NA
UHGV-2143102_10	eggNOG-mapper	931276.Cspa_c07520	NA	NA
UHGV-2143102_10	Pfam	PF20378	NA	DUF6673
UHGV-2143102_10	Structural annotation	PF20378	NA	NA
UHGV-2143102_11	PHROG	phrog_820	major tail protein	tail
UHGV-2143102_11	UniRef90	UniRef90_A0A174M1L1	S-l_SbsC_C domain-containing protein	NA
UHGV-2143102_11	eggNOG-mapper	411461.DORFOR_01172	NA	NA
UHGV-2143102_11	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2143102_12	PHROG	phrog_3266	tail completion	connector
UHGV-2143102_12	Structural annotation	PF12691	NA	NA
UHGV-2143102_13	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2143102_13	UniRef90	UniRef90_UPI001E609FF9	minor capsid protein	NA
UHGV-2143102_13	eggNOG-mapper	411461.DORFOR_01170	Minor capsid protein	NA
UHGV-2143102_13	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-2143102_13	Structural annotation	PF11114	NA	NA
UHGV-2143102_14	PHROG	phrog_3366	NA	unknown function
UHGV-2143102_14	eggNOG-mapper	573061.Clocel_3539	NA	NA
UHGV-2143102_14	Pfam	PF20536	NA	DUF6751
UHGV-2143102_14	Structural annotation	PF20536	NA	NA
UHGV-2143102_15	PHROG	phrog_541	head-tail adaptor	connector
UHGV-2143102_15	eggNOG-mapper	1449050.JNLE01000003_gene3888	NA	NA
UHGV-2143102_16	PHROG	phrog_283	major head protein	head and packaging
UHGV-2143102_16	UniRef90	UniRef90_A0A173REC9	p22 coat protein-gene protein 5	NA
UHGV-2143102_16	eggNOG-mapper	411461.DORFOR_01167	P22 coat protein - gene protein 5	NA
UHGV-2143102_16	Pfam	PF11651	P22 coat protein - gene protein 5	P22_CoatProtein
UHGV-2143102_16	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-2143102_17	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-2143102_17	UniRef90	UniRef90_A0A173RCF7	Phage minor structural protein GP20	NA
UHGV-2143102_17	eggNOG-mapper	411461.DORFOR_01166	COG NOG36366 non supervised orthologous group	NA
UHGV-2143102_17	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-2143102_18	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-2143102_18	UniRef90	UniRef90_A0A415UCX1	NA	NA
UHGV-2143102_18	eggNOG-mapper	411461.DORFOR_01165	NA	NA
UHGV-2143102_18	Pfam	PF14359	NA	DUF4406
UHGV-2143102_18	Structural annotation	PF14359	NA	NA
UHGV-2143102_20	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2143102_20	UniRef90	UniRef90_A0A173RCB2	Phage minor capsid protein 2	NA
UHGV-2143102_20	eggNOG-mapper	411461.DORFOR_01164	NA	NA
UHGV-2143102_20	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2143102_20	COG	COG2369	NA	NA
UHGV-2143102_20	Structural annotation	PF06152	NA	NA
UHGV-2143102_21	PHROG	phrog_533	portal protein	head and packaging
UHGV-2143102_21	UniRef90	UniRef90_A0A173RC48	Phage portal protein, putative, A118 family	NA
UHGV-2143102_21	eggNOG-mapper	411461.DORFOR_01163	NA	NA
UHGV-2143102_21	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2143102_22	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2143102_22	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-2143102_22	UniRef90	UniRef90_B0G4H5	Phage terminase, large subunit, PBSX family	NA
UHGV-2143102_22	eggNOG-mapper	411461.DORFOR_01162	Phage terminase, large subunit, PBSX family	NA
UHGV-2143102_22	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-2143102_22	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-2143102_22	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-2143102_22	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-2143102_22	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2143102_22	COG	COG1783	Phage terminase large subunit	NA
UHGV-2143102_22	Structural annotation	PF04466, PF17288, PF06056, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2143102_23	PHROG	phrog_11237	NA	unknown function
UHGV-2143102_23	eggNOG-mapper	411461.DORFOR_01161	NA	NA
UHGV-2143102_24	PHROG	phrog_6568	NA	unknown function
UHGV-2143102_26	KOfam	K07171	mazF, ndoA, chpA; mRNA interferase MazF [EC:3.1.-.-]	NA
UHGV-2143102_26	PHROG	phrog_1936	MazF-like growth inhibitor	moron, auxiliary metabolic gene and host takeover
UHGV-2143102_26	UniRef90	UniRef90_UPI0015711440	type II toxin-antitoxin system PemK/MazF family toxin	NA
UHGV-2143102_26	eggNOG-mapper	411461.DORFOR_01157	NA	NA
UHGV-2143102_26	Pfam	PF02452	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
UHGV-2143102_26	COG	COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	NA
UHGV-2143102_26	Structural annotation	PF02452, NF007386, COG2337	NA	NA
UHGV-2143102_31	Structural annotation	PF07870, TIGR02501	NA	NA
UHGV-2143102_32	PHROG	phrog_8684	NA	unknown function
UHGV-2143102_32	UniRef90	UniRef90_UPI001C0F317C	YopX family protein	NA
UHGV-2143102_32	eggNOG-mapper	457412.RSAG_01162	YopX protein	NA
UHGV-2143102_32	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-2143102_34	PHROG	phrog_7566	NA	unknown function
UHGV-2143102_34	eggNOG-mapper	1280698.AUJS01000007_gene1020	NA	NA
UHGV-2143102_35	PHROG	phrog_15077	NA	unknown function
UHGV-2143102_35	UniRef90	UniRef90_A0A174WLY0	NA	NA
UHGV-2143102_35	eggNOG-mapper	1280698.AUJS01000007_gene1019	NA	NA
UHGV-2143102_35	Structural annotation	PF11300, NF033725	NA	NA
UHGV-2143102_36	PHROG	phrog_8470	NA	unknown function
UHGV-2143102_36	UniRef90	UniRef90_UPI001D0719D3	PcfJ domain-containing protein	NA
UHGV-2143102_36	eggNOG-mapper	1235793.C809_02197	PcfJ-like protein	NA
UHGV-2143102_36	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-2143102_36	Structural annotation	PF14284	NA	NA
UHGV-2143102_37	UniRef90	UniRef90_UPI0003F6328F	Cas9 inhibitor AcrIIA9 family protein	NA
UHGV-2143102_37	eggNOG-mapper	999413.HMPREF1094_04704	NA	NA
UHGV-2143102_37	Pfam	PF14058	PcfK-like protein	PcfK
UHGV-2143102_38	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-2143102_38	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-2143102_38	UniRef90	UniRef90_A0A173RBQ5	Ribonuclease H	NA
UHGV-2143102_38	eggNOG-mapper	1280698.AUJS01000007_gene1015	RNA-DNA hybrid ribonuclease activity	NA
UHGV-2143102_38	Pfam	PF00075	RNase H	RNase_H
UHGV-2143102_38	COG	COG0328	Ribonuclease HI	NA
UHGV-2143102_38	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-2143102_40	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2143102_40	eggNOG-mapper	411461.DORFOR_01138	NA	NA
UHGV-2143102_40	Structural annotation	PF01446	NA	NA
UHGV-2143102_45	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-2143102_45	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2143102_45	UniRef90	UniRef90_A0A173RBE6	Antitoxin PezA	NA
UHGV-2143102_45	eggNOG-mapper	1280698.AUJS01000007_gene1002	Helix-turn-helix XRE-family like proteins	NA
UHGV-2143102_45	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2143102_45	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2143102_45	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-2143102_47	Structural annotation	PF12869, PF01336, NF012035, COG4085	NA	NA
UHGV-2143102_49	KOfam	K14059	int; integrase	NA
UHGV-2143102_49	PHROG	phrog_1	integrase	integration and excision
UHGV-2143102_49	UniRef90	UniRef90_A0A173RBY2	Site-specific tyrosine recombinase XerD	NA
UHGV-2143102_49	eggNOG-mapper	1280698.AUJS01000007_gene999	Phage integrase family	NA
UHGV-2143102_49	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2143102_49	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2143102_49	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA