UHGV-2143342

Genome information

Genome length 37,501 bps

CDS count 57

Completeness 96.31% (high-quality)

geNomad score 0.9808

Prediction confidence Confident

Genome information
Genome ID	UHGV-2143342
vOTU ID	vOTU-073195
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029746\|Ga0245173_100102\|provirus_34893_72393
BioSample	NA
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.31% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	25
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9808
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	67.08
Jumbo phage	No

Genome content
Genome length	37,501 bps
GC content	40.44%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	92.02%
Average CDS length	608.32 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2143342_1	UniRef90	UniRef90_A0A6L8RZT9	TetR/AcrR family transcriptional regulator	NA
UHGV-2143342_1	eggNOG-mapper	471875.RUMLAC_02592	tetR family	NA
UHGV-2143342_1	COG	COG1309	DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA	NA
UHGV-2143342_2	KOfam	K02051	ABC.SN.S; NitT/TauT family transport system substrate-binding protein	NA
UHGV-2143342_2	UniRef90	UniRef90_UPI001570A6DA	ABC transporter substrate-binding protein	NA
UHGV-2143342_2	eggNOG-mapper	411462.DORLON_01446	COG COG0715 ABC-type nitrate sulfonate bicarbonate transport systems, periplasmic components	NA
UHGV-2143342_2	Pfam	PF09084	NMT1/THI5 like	NMT1
UHGV-2143342_2	COG	COG0715	ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component	NA
UHGV-2143342_3	PHROG	phrog_2742	endolysin	lysis
UHGV-2143342_3	UniRef90	UniRef90_A0A845KJG7	MurNAc-LAA domain-containing protein	NA
UHGV-2143342_3	eggNOG-mapper	411462.DORLON_00764	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2143342_3	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-2143342_3	Pfam	PF07538	Clostridial hydrophobic W	ChW
UHGV-2143342_3	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2143342_3	Structural annotation	PF01520, TIGR02883, COG5492, COG0860	NA	NA
UHGV-2143342_4	PHROG	phrog_443	holin	lysis
UHGV-2143342_4	UniRef90	UniRef90_UPI001F16E4E6	holin	NA
UHGV-2143342_4	eggNOG-mapper	411462.DORLON_00825	Putative lactococcus lactis phage r1t holin	NA
UHGV-2143342_4	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-2143342_4	Structural annotation	PF16945	NA	NA
UHGV-2143342_5	PHROG	phrog_1863	NA	unknown function
UHGV-2143342_5	eggNOG-mapper	1226322.HMPREF1545_04027	NA	NA
UHGV-2143342_6	KOfam	K20846	cgkA; kappa-carrageenase [EC:3.2.1.83]	NA
UHGV-2143342_6	PHROG	phrog_215	structural protein with Ig domain	head and packaging
UHGV-2143342_6	UniRef90	UniRef90_A0A6L8RVV7	Ig-like domain-containing protein	NA
UHGV-2143342_6	eggNOG-mapper	397288.C806_04531	Bacterial Ig-like domain 2	NA
UHGV-2143342_6	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-2143342_6	COG	COG5492	NA	NA
UHGV-2143342_7	PHROG	phrog_5240	tail fiber protein	tail
UHGV-2143342_7	UniRef90	UniRef90_UPI00156D7781	SGNH/GDSL hydrolase family protein	NA
UHGV-2143342_7	eggNOG-mapper	411462.DORLON_00771	NA	NA
UHGV-2143342_8	PHROG	phrog_19695	NA	unknown function
UHGV-2143342_8	eggNOG-mapper	411462.DORLON_00772	NA	NA
UHGV-2143342_8	Structural annotation	PF19714	NA	NA
UHGV-2143342_9	PHROG	phrog_9994	NA	unknown function
UHGV-2143342_9	UniRef90	UniRef90_UPI001570499E	H-type lectin domain-containing protein	NA
UHGV-2143342_9	eggNOG-mapper	1256908.HMPREF0373_00465	NA	NA
UHGV-2143342_9	Pfam	PF09458	H-type lectin domain	H_lectin
UHGV-2143342_9	Structural annotation	PF20747	NA	NA
UHGV-2143342_10	PHROG	phrog_538	minor tail protein	tail
UHGV-2143342_10	UniRef90	UniRef90_A0A1C5PP83	Phage-related holin (Lysis protein)	NA
UHGV-2143342_10	eggNOG-mapper	1256908.HMPREF0373_00466	NA	NA
UHGV-2143342_10	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-2143342_10	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-2143342_11	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-2143342_11	UniRef90	UniRef90_A0A414P9H2	Phage tail protein	NA
UHGV-2143342_11	eggNOG-mapper	1256908.HMPREF0373_00467	NA	NA
UHGV-2143342_11	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-2143342_12	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-2143342_12	UniRef90	UniRef90_UPI0015705DAC	phage tail tape measure protein	NA
UHGV-2143342_12	eggNOG-mapper	946235.CAER01000065_gene2435	Phage tail tape measure protein	NA
UHGV-2143342_12	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-2143342_12	Pfam	PF04513	Baculovirus polyhedron envelope protein, PEP, C terminus	Baculo_PEP_C
UHGV-2143342_12	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-2143342_12	COG	COG5280	Phage-related minor tail protein	NA
UHGV-2143342_13	PHROG	phrog_1021	NA	unknown function
UHGV-2143342_14	PHROG	phrog_885	major tail protein	tail
UHGV-2143342_14	eggNOG-mapper	1256908.HMPREF0373_00471	NA	NA
UHGV-2143342_14	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-2143342_15	PHROG	phrog_957	head protein	head and packaging
UHGV-2143342_15	eggNOG-mapper	1235800.C819_02229	NA	NA
UHGV-2143342_15	Structural annotation	PF12691	NA	NA
UHGV-2143342_16	UniRef90	UniRef90_UPI00156FBF43	HK97 gp10 family phage protein	NA
UHGV-2143342_16	eggNOG-mapper	1256908.HMPREF0373_00473	NA	NA
UHGV-2143342_16	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-2143342_17	PHROG	phrog_1059	head-tail adaptor	connector
UHGV-2143342_17	UniRef90	UniRef90_UPI00156FFBE5	head-tail adaptor protein	NA
UHGV-2143342_17	eggNOG-mapper	1235800.C819_02231	NA	NA
UHGV-2143342_17	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2143342_18	PHROG	phrog_1236	head protein	head and packaging
UHGV-2143342_18	eggNOG-mapper	1235800.C819_02232	NA	NA
UHGV-2143342_18	Structural annotation	PF05135	NA	NA
UHGV-2143342_20	PHROG	phrog_212	major head protein	head and packaging
UHGV-2143342_20	UniRef90	UniRef90_UPI00156FB4D6	phage capsid protein	NA
UHGV-2143342_20	eggNOG-mapper	1235800.C819_02234	NA	NA
UHGV-2143342_20	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-2143342_21	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-2143342_21	UniRef90	UniRef90_UPI00156E5EEA	phage scaffolding protein	NA
UHGV-2143342_21	eggNOG-mapper	1235800.C819_02235	Phage minor structural protein GP20	NA
UHGV-2143342_21	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-2143342_21	Structural annotation	PF06810	NA	NA
UHGV-2143342_22	PHROG	phrog_34731	NA	unknown function
UHGV-2143342_22	eggNOG-mapper	365659.smi_0098	Cysteine-rich CPCC	NA
UHGV-2143342_22	Structural annotation	PF02699, MF_00369, TIGR00739, COG1862	NA	NA
UHGV-2143342_23	PHROG	phrog_595	head maturation protease	head and packaging
UHGV-2143342_23	UniRef90	UniRef90_UPI001C0FAD87	phage head morphogenesis protein	NA
UHGV-2143342_23	eggNOG-mapper	1256908.HMPREF0373_00484	Phage Mu protein F like protein	NA
UHGV-2143342_23	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-2143342_23	Pfam	PF21814	NA	DUF6883
UHGV-2143342_23	COG	COG2369	NA	NA
UHGV-2143342_23	Structural annotation	PF21814, PF06152, TIGR01641, COG2369	NA	NA
UHGV-2143342_24	PHROG	phrog_64	portal protein	head and packaging
UHGV-2143342_24	UniRef90	UniRef90_UPI00157076FC	phage portal protein	NA
UHGV-2143342_24	eggNOG-mapper	1235800.C819_02239	phage portal protein, SPP1	NA
UHGV-2143342_24	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2143342_24	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-2143342_25	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2143342_25	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-2143342_25	UniRef90	UniRef90_UPI00191E59EB	PBSX family phage terminase large subunit	NA
UHGV-2143342_25	eggNOG-mapper	1256908.HMPREF0373_00486	Phage terminase, large subunit, PBSX family	NA
UHGV-2143342_25	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-2143342_25	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-2143342_25	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2143342_25	COG	COG1783	Phage terminase large subunit	NA
UHGV-2143342_25	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2143342_26	PHROG	phrog_1233	NA	unknown function
UHGV-2143342_26	eggNOG-mapper	1256908.HMPREF0373_00487	NA	NA
UHGV-2143342_27	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-2143342_27	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-2143342_27	UniRef90	UniRef90_UPI00191E69A6	terminase small subunit	NA
UHGV-2143342_27	eggNOG-mapper	697281.Mahau_0566	Terminase Small Subunit	NA
UHGV-2143342_27	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-2143342_27	COG	COG3728	Phage terminase, small subunit	NA
UHGV-2143342_27	Structural annotation	PF03592, COG3728	NA	NA
UHGV-2143342_28	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2143342_28	UniRef90	UniRef90_A0A416MN03	Sigma70_r4 domain-containing protein	NA
UHGV-2143342_28	eggNOG-mapper	1256908.HMPREF0373_00671	NA	NA
UHGV-2143342_28	Structural annotation	PF04545, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-2143342_29	KOfam	K07171	mazF, ndoA, chpA; mRNA interferase MazF [EC:3.1.-.-]	NA
UHGV-2143342_29	PHROG	phrog_1936	MazF-like growth inhibitor	moron, auxiliary metabolic gene and host takeover
UHGV-2143342_29	UniRef90	UniRef90_UPI0015711440	type II toxin-antitoxin system PemK/MazF family toxin	NA
UHGV-2143342_29	eggNOG-mapper	411461.DORFOR_01157	NA	NA
UHGV-2143342_29	Pfam	PF02452	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
UHGV-2143342_29	COG	COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	NA
UHGV-2143342_29	Structural annotation	PF02452, NF007386, COG2337	NA	NA
UHGV-2143342_31	PHROG	phrog_10469	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-2143342_31	UniRef90	UniRef90_UPI00156E5B7D	phage replisome organizer N-terminal domain-containing protein	NA
UHGV-2143342_31	eggNOG-mapper	411470.RUMGNA_02197	phage replisome	NA
UHGV-2143342_31	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-2143342_31	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-2143342_31	Structural annotation	PF09681, TIGR01714, COG3355	NA	NA
UHGV-2143342_32	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2143342_32	eggNOG-mapper	887929.HMP0721_1279	NA	NA
UHGV-2143342_34	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-2143342_34	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2143342_34	UniRef90	UniRef90_UPI00156F1EC1	single-stranded DNA-binding protein	NA
UHGV-2143342_34	eggNOG-mapper	397288.C806_00453	Single-strand binding protein family	NA
UHGV-2143342_34	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2143342_34	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-2143342_34	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2143342_34	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-2143342_34	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-2143342_35	UniRef90	UniRef90_UPI0011110A17	NA	NA
UHGV-2143342_35	eggNOG-mapper	665950.HMPREF1025_02540	NA	NA
UHGV-2143342_36	PHROG	phrog_15198	NA	unknown function
UHGV-2143342_36	UniRef90	UniRef90_UPI0015715EFA	NA	NA
UHGV-2143342_36	eggNOG-mapper	411462.DORLON_00804	NA	NA
UHGV-2143342_36	Pfam	PF04448	NA	DUF551
UHGV-2143342_37	PHROG	phrog_954	DNA methyltransferase	other
UHGV-2143342_37	UniRef90	UniRef90_UPI00156F6AA5	methyltransferase domain-containing protein	NA
UHGV-2143342_37	eggNOG-mapper	1395513.P343_12775	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-2143342_37	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-2143342_37	Pfam	PF08241	Methyltransferase domain	Methyltransf_11
UHGV-2143342_37	COG	COG0500	SAM-dependent methyltransferase	NA
UHGV-2143342_37	Structural annotation	PF05148, MF_01057, NF011527, COG4123	NA	NA
UHGV-2143342_38	PHROG	phrog_9298	radical SAM domain protein	other
UHGV-2143342_38	UniRef90	UniRef90_UPI00156DBFFE	radical SAM protein	NA
UHGV-2143342_38	eggNOG-mapper	1235793.C809_02647	NA	NA
UHGV-2143342_38	COG	COG1032	Radical SAM superfamily enzyme YgiQ, UPF0313 family	NA
UHGV-2143342_38	Structural annotation	MF_01864, NF010916, COG2516	NA	NA
UHGV-2143342_39	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-2143342_39	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2143342_39	UniRef90	UniRef90_UPI00156E98BD	recombinase RecT	NA
UHGV-2143342_39	eggNOG-mapper	428127.EUBDOL_01509	RecT family	NA
UHGV-2143342_39	Pfam	PF03837	RecT family	RecT
UHGV-2143342_39	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-2143342_39	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-2143342_39	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-2143342_40	PHROG	phrog_674	NA	unknown function
UHGV-2143342_40	UniRef90	UniRef90_UPI0015706E94	NA	NA
UHGV-2143342_40	eggNOG-mapper	742765.HMPREF9457_02106	NA	NA
UHGV-2143342_40	Pfam	PF07083	NA	DUF1351
UHGV-2143342_40	Structural annotation	PF07083	NA	NA
UHGV-2143342_41	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-2143342_41	UniRef90	UniRef90_UPI00157031BA	YqaJ viral recombinase family protein	NA
UHGV-2143342_41	eggNOG-mapper	742765.HMPREF9457_02105	YqaJ viral recombinase family	NA
UHGV-2143342_41	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-2143342_41	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-2143342_41	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-2143342_41	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-2143342_45	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-2143342_45	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-2143342_45	UniRef90	UniRef90_UPI0015713293	phage antirepressor KilAC domain-containing protein	NA
UHGV-2143342_45	eggNOG-mapper	411470.RUMGNA_02184	Phage antirepressor protein	NA
UHGV-2143342_45	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-2143342_45	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-2143342_45	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-2143342_45	Structural annotation	PF09669, PF03374, TIGR02681, COG3646	NA	NA
UHGV-2143342_48	Structural annotation	PF07378, MF_00783, COG5443	NA	NA
UHGV-2143342_50	PHROG	phrog_1305	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2143342_50	UniRef90	UniRef90_A0A391NZN5	NA	NA
UHGV-2143342_50	eggNOG-mapper	445974.CLORAM_02962	NA	NA
UHGV-2143342_50	Structural annotation	COG2250	NA	NA
UHGV-2143342_51	PHROG	phrog_14088	NA	unknown function
UHGV-2143342_51	UniRef90	UniRef90_A0A3R6M7R7	Carboxypeptidase	NA
UHGV-2143342_51	eggNOG-mapper	1256908.HMPREF0373_00648	NA	NA
UHGV-2143342_52	PHROG	phrog_2657	transcriptional regulator	transcription regulation
UHGV-2143342_52	UniRef90	UniRef90_UPI001570AC72	Rha family transcriptional regulator	NA
UHGV-2143342_52	eggNOG-mapper	411470.RUMGNA_03232	NA	NA
UHGV-2143342_52	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-2143342_52	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-2143342_52	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-2143342_52	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-2143342_53	UniRef90	UniRef90_UPI001C00A264	NA	NA
UHGV-2143342_53	eggNOG-mapper	411470.RUMGNA_03231	NA	NA
UHGV-2143342_53	Pfam	PF05339	NA	DUF739
UHGV-2143342_53	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-2143342_53	Structural annotation	PF05339, NF002773, COG1476	NA	NA
UHGV-2143342_54	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-2143342_54	UniRef90	UniRef90_UPI00156F9B05	transcriptional regulator	NA
UHGV-2143342_54	eggNOG-mapper	411470.RUMGNA_03230	sequence-specific DNA binding	NA
UHGV-2143342_54	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2143342_54	Structural annotation	PF01381, NF007257, COG3655	NA	NA
UHGV-2143342_55	PHROG	phrog_87	metallo-protease	other
UHGV-2143342_55	UniRef90	UniRef90_UPI001570E616	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-2143342_55	eggNOG-mapper	742765.HMPREF9457_02093	IrrE N-terminal-like domain	NA
UHGV-2143342_55	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-2143342_55	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-2143342_55	Structural annotation	PF06114, COG2856	NA	NA
UHGV-2143342_56	PHROG	phrog_9418	NA	unknown function
UHGV-2143342_56	eggNOG-mapper	411462.DORLON_00822	NA	NA
UHGV-2143342_56	Structural annotation	PF10233	NA	NA
UHGV-2143342_57	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-2143342_57	PHROG	phrog_95	integrase	integration and excision
UHGV-2143342_57	UniRef90	UniRef90_UPI00156F85ED	recombinase family protein	NA
UHGV-2143342_57	eggNOG-mapper	411461.DORFOR_00037	Resolvase, N terminal domain	NA
UHGV-2143342_57	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-2143342_57	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-2143342_57	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2143342_57	Structural annotation	PF00239, NF041201, COG1961	NA	NA