UHGV-2144575

Genome information

Genome length 37,839 bps

CDS count 41

Completeness 99.79% (high-quality)

geNomad score 0.9743

Prediction confidence Confident

Genome information
Genome ID	UHGV-2144575
vOTU ID	vOTU-007512
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029765\|Ga0243842_100034\|provirus_26785_66500
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.79% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	6
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9743
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Uncertain - viral or bacterial
viralVerify score	1.05
Jumbo phage	No

Genome content
Genome length	37,839 bps
GC content	57.18%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	41
CDS density	91.49%
Average CDS length	846.00 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2144575_1	KOfam	K10117	msmE; raffinose/stachyose/melibiose transport system substrate-binding protein	NA
UHGV-2144575_1	UniRef90	UniRef90_A0A3F3JU02	ABC transporter substrate-binding protein	NA
UHGV-2144575_1	eggNOG-mapper	748224.HMPREF9436_01373	Bacterial extracellular solute-binding protein	NA
UHGV-2144575_1	Pfam	PF13416	Bacterial extracellular solute-binding protein	SBP_bac_8
UHGV-2144575_1	COG	COG0737	2',3'-cyclic-nucleotide 2'-phosphodiesterase/5'- or 3'-nucleotidase, 5'-nucleotidase family	NA
UHGV-2144575_2	KOfam	K14059	int; integrase	NA
UHGV-2144575_2	PHROG	phrog_1	integrase	integration and excision
UHGV-2144575_2	UniRef90	UniRef90_E2ZI84	Site-specific recombinase, phage integrase family	NA
UHGV-2144575_2	eggNOG-mapper	748224.HMPREF9436_01375	Phage integrase family	NA
UHGV-2144575_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2144575_2	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2144575_2	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-2144575_3	KOfam	K06218	relE, stbE; mRNA interferase RelE/StbE	NA
UHGV-2144575_3	PHROG	phrog_1213	RelE-like toxin	moron, auxiliary metabolic gene and host takeover
UHGV-2144575_3	UniRef90	UniRef90_A0A6N7TR10	Type II toxin-antitoxin system RelE/ParE family toxin	NA
UHGV-2144575_3	eggNOG-mapper	1235792.C808_03021	Addiction module toxin, RelE StbE family	NA
UHGV-2144575_3	Pfam	PF05016	ParE toxin of type II toxin-antitoxin system, parDE	ParE_toxin
UHGV-2144575_3	COG	COG2026	mRNA-degrading endonuclease RelE, toxin component of the RelBE toxin-antitoxin system	NA
UHGV-2144575_3	Structural annotation	PF05016, TIGR00053, COG2026	NA	NA
UHGV-2144575_4	eggNOG-mapper	1235792.C808_02931	NA	NA
UHGV-2144575_5	PHROG	phrog_6988	NA	unknown function
UHGV-2144575_5	UniRef90	UniRef90_A0A6N7TNH0	NA	NA
UHGV-2144575_5	eggNOG-mapper	445974.CLORAM_02972	NA	NA
UHGV-2144575_5	PADLOC	ThsB1_00002	TIR-like	Thoeris
UHGV-2144575_5	Pfam	PF08937	Thoeris protein ThsB, TIR-like domain	ThsB_TIR
UHGV-2144575_5	Structural annotation	PF08937, MF_03036, TIGR03646, COG0758	NA	NA
UHGV-2144575_6	PHROG	phrog_419	NA	unknown function
UHGV-2144575_6	UniRef90	UniRef90_UPI001CBFD05B	PGDYG domain-containing protein	NA
UHGV-2144575_6	eggNOG-mapper	203119.Cthe_2457	NA	NA
UHGV-2144575_6	Structural annotation	PF14083	NA	NA
UHGV-2144575_7	PHROG	phrog_7395	NA	unknown function
UHGV-2144575_7	UniRef90	UniRef90_A0A6N7TQQ3	NA	NA
UHGV-2144575_7	eggNOG-mapper	270374.MELB17_05499	NA	NA
UHGV-2144575_7	Pfam	PF14015	NA	DUF4231
UHGV-2144575_7	NCBIFam	NF033634.1	SLATT domain-containing protein	NA
UHGV-2144575_9	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2144575_9	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2144575_9	UniRef90	UniRef90_A0A396LL48	XRE family transcriptional regulator	NA
UHGV-2144575_9	eggNOG-mapper	665956.HMPREF1032_04076	Peptidase S24-like	NA
UHGV-2144575_9	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2144575_9	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2144575_9	Structural annotation	PF13560, MF_02017, NF041951, COG1396	NA	NA
UHGV-2144575_10	UniRef90	UniRef90_A0A2A6ZGP6	Transcriptional regulator	NA
UHGV-2144575_10	eggNOG-mapper	445972.ANACOL_00136	Cro/C1-type HTH DNA-binding domain	NA
UHGV-2144575_10	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-2144575_10	Structural annotation	PF13560, NF041951, COG3655	NA	NA
UHGV-2144575_12	eggNOG-mapper	1232443.BAIA02000032_gene1908	NA	NA
UHGV-2144575_13	UniRef90	UniRef90_A0A6N7TQI5	Excisionase family DNA-binding protein	NA
UHGV-2144575_13	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-2144575_13	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-2144575_13	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-2144575_14	Structural annotation	PF13214, TIGR02501	NA	NA
UHGV-2144575_16	Structural annotation	PF10735	NA	NA
UHGV-2144575_17	PHROG	phrog_24484	NA	unknown function
UHGV-2144575_18	UniRef90	UniRef90_A0A2A6ZGV7	HTH cro/C1-type domain-containing protein	NA
UHGV-2144575_18	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-2144575_21	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2144575_21	eggNOG-mapper	1211817.CCAT010000012_gene2727	NA	NA
UHGV-2144575_22	UniRef90	UniRef90_A0A844DP33	SqdX protein	NA
UHGV-2144575_22	Structural annotation	PF06530, MF_00674, TIGR01637, COG1342	NA	NA
UHGV-2144575_23	UniRef90	UniRef90_UPI00195E9406	transposase	NA
UHGV-2144575_23	Pfam	PF13518	Helix-turn-helix domain	HTH_28
UHGV-2144575_24	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2144575_24	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-2144575_24	UniRef90	UniRef90_A0A316SB77	Terminase-like family protein	NA
UHGV-2144575_24	eggNOG-mapper	748224.HMPREF9436_01395	Terminase-like family	NA
UHGV-2144575_24	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-2144575_24	COG	COG1783	Phage terminase large subunit	NA
UHGV-2144575_24	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-2144575_25	PHROG	phrog_156	portal protein	head and packaging
UHGV-2144575_25	eggNOG-mapper	748224.HMPREF9436_01396	NA	NA
UHGV-2144575_25	Structural annotation	PF16510, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-2144575_26	PHROG	phrog_774	NA	unknown function
UHGV-2144575_26	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-2144575_27	KOfam	K07584	NA	NA
UHGV-2144575_27	PHROG	phrog_13908	NA	unknown function
UHGV-2144575_27	UniRef90	UniRef90_A0A396LG63	Ribosomal-processing cysteine protease Prp	NA
UHGV-2144575_27	eggNOG-mapper	748224.HMPREF9436_01398	Cysteine protease Prp	NA
UHGV-2144575_27	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-2144575_27	COG	COG2868	NA	NA
UHGV-2144575_27	Structural annotation	PF04327, NF011133, COG2868	NA	NA
UHGV-2144575_28	PHROG	phrog_1357	major head protein	head and packaging
UHGV-2144575_28	UniRef90	UniRef90_A0A2A6ZH28	N4-gp56 family major capsid protein	NA
UHGV-2144575_28	eggNOG-mapper	748224.HMPREF9436_01399	NA	NA
UHGV-2144575_28	Pfam	PF13252	NA	DUF4043
UHGV-2144575_28	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-2144575_28	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-2144575_29	PHROG	phrog_15239	NA	unknown function
UHGV-2144575_30	PHROG	phrog_12105	NA	unknown function
UHGV-2144575_31	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-2144575_31	eggNOG-mapper	748224.HMPREF9436_01402	NA	NA
UHGV-2144575_31	Structural annotation	PF11134, TIGR03300, NF038126, COG1520	NA	NA
UHGV-2144575_32	UniRef90	UniRef90_A0A329TFM2	Rho-GAP domain-containing protein	NA
UHGV-2144575_33	eggNOG-mapper	748224.HMPREF9436_01404	lysozyme activity	NA
UHGV-2144575_33	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-2144575_34	eggNOG-mapper	748224.HMPREF9436_01405	lysozyme activity	NA
UHGV-2144575_34	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-2144575_34	Structural annotation	MF_02066	NA	NA
UHGV-2144575_35	eggNOG-mapper	748224.HMPREF9436_01406	NA	NA
UHGV-2144575_36	PHROG	phrog_22978	NA	unknown function
UHGV-2144575_36	UniRef90	UniRef90_E2ZIB5	Putative septum site-determining protein MinC	NA
UHGV-2144575_36	eggNOG-mapper	748224.HMPREF9436_01406	NA	NA
UHGV-2144575_36	Pfam	PF18798	Large polyvalent protein-associated domain 3	LPD3
UHGV-2144575_37	eggNOG-mapper	748224.HMPREF9436_01407	COG NOG18825 non supervised orthologous group	NA
UHGV-2144575_37	Structural annotation	PF10651	NA	NA
UHGV-2144575_39	PHROG	phrog_28526	NA	unknown function
UHGV-2144575_39	UniRef90	UniRef90_UPI00156FE2AD	NA	NA
UHGV-2144575_39	eggNOG-mapper	748224.HMPREF9436_00155	NA	NA
UHGV-2144575_39	Pfam	PF04255	NA	DUF433
UHGV-2144575_40	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-2144575_40	PHROG	phrog_894	endolysin	lysis
UHGV-2144575_40	UniRef90	UniRef90_A0A1C5NY12	Zinc D-Ala-D-Ala carboxypeptidase	NA
UHGV-2144575_40	eggNOG-mapper	748224.HMPREF9436_03320	Peptidase M15	NA
UHGV-2144575_40	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-2144575_40	COG	COG3108	NA	NA
UHGV-2144575_40	Structural annotation	PF05951, COG3108	NA	NA
UHGV-2144575_41	PHROG	phrog_199	holin	lysis
UHGV-2144575_41	UniRef90	UniRef90_A0A2A6Z8T2	Holin	NA
UHGV-2144575_41	eggNOG-mapper	742740.HMPREF9474_02333	Bacteriophage holin family	NA
UHGV-2144575_41	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-2144575_41	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-2144575_41	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-2144575_41	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA