UHGV-2144731

Genome information

Genome length 40,111 bps

CDS count 61

Completeness 99.90% (high-quality)

geNomad score 0.9594

Prediction confidence Confident

Genome information
Genome ID	UHGV-2144731
vOTU ID	vOTU-076658
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029725\|Ga0245208_100007\|provirus_76307_120851
BioSample	SAMEA3449260
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	18
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9594
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	43.72
Jumbo phage	No

Genome content
Genome length	40,111 bps
GC content	46.71%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	61
CDS density	91.43%
Average CDS length	604.33 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2144731_1	PHROG	phrog_9605	NA	unknown function
UHGV-2144731_1	UniRef90	UniRef90_A0A1Y4LLN4	NA	NA
UHGV-2144731_1	eggNOG-mapper	1410628.JNKS01000004_gene2023	NA	NA
UHGV-2144731_1	Pfam	PF12358	NA	DUF3644
UHGV-2144731_1	Pfam	PF18740	EC042_2821-like Restriction Endonuclease-like domain	EC042_2821
UHGV-2144731_1	Structural annotation	PF12358, COG1895	NA	NA
UHGV-2144731_2	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2144731_2	UniRef90	UniRef90_A0A1Y4HYP5	Repressor LexA	NA
UHGV-2144731_2	eggNOG-mapper	411470.RUMGNA_03230	sequence-specific DNA binding	NA
UHGV-2144731_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2144731_2	Pfam	PF13413	Helix-turn-helix domain	HTH_25
UHGV-2144731_2	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2144731_3	UniRef90	UniRef90_A0A6M5GAD1	NA	NA
UHGV-2144731_3	eggNOG-mapper	171693.BN988_01635	NA	NA
UHGV-2144731_3	Pfam	PF05339	NA	DUF739
UHGV-2144731_3	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-2144731_3	Structural annotation	PF05339, MF_00535, NF002773, COG3655	NA	NA
UHGV-2144731_4	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-2144731_4	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-2144731_4	UniRef90	UniRef90_UPI001C3C1005	Phage antirepressor KilAC domain-containing protein	NA
UHGV-2144731_4	eggNOG-mapper	568816.Acin_1403	Phage antirepressor protein KilAC domain	NA
UHGV-2144731_4	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-2144731_4	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-2144731_4	COG	COG3617	Prophage antirepressor	NA
UHGV-2144731_4	Structural annotation	PF03374, PF02498, COG3645, COG3617	NA	NA
UHGV-2144731_8	UniRef90	UniRef90_A0A416KCJ3	DNA-binding protein	NA
UHGV-2144731_8	eggNOG-mapper	246199.CUS_5199	Helix-turn-helix domain	NA
UHGV-2144731_8	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-2144731_8	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-2144731_9	Structural annotation	PF06257, COG4466	NA	NA
UHGV-2144731_14	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2144731_14	UniRef90	UniRef90_A0A412AWF4	ATP-binding protein	NA
UHGV-2144731_14	eggNOG-mapper	1415774.U728_1119	AAA domain	NA
UHGV-2144731_14	Pfam	PF13479	AAA domain	AAA_24
UHGV-2144731_14	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-2144731_15	PHROG	phrog_18107	NA	unknown function
UHGV-2144731_15	UniRef90	UniRef90_UPI00058F46CC	NA	NA
UHGV-2144731_15	eggNOG-mapper	476272.RUMHYD_02831	NA	NA
UHGV-2144731_15	Structural annotation	PF05037	NA	NA
UHGV-2144731_16	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-2144731_16	UniRef90	UniRef90_A0A6N2R581	ERCC4 domain-containing protein	NA
UHGV-2144731_16	eggNOG-mapper	476272.RUMHYD_01740	ERCC4 domain	NA
UHGV-2144731_16	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-2144731_16	COG	COG1948	ERCC4-type crossover junction endonuclease	NA
UHGV-2144731_16	Structural annotation	PF02732, NF040956, COG1948	NA	NA
UHGV-2144731_17	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-2144731_17	UniRef90	UniRef90_A0A1M5ZHR8	TF_AP-2 domain-containing protein	NA
UHGV-2144731_17	eggNOG-mapper	1120998.AUFC01000013_gene2941	NA	NA
UHGV-2144731_18	KOfam	K17680	PEO1; twinkle protein [EC:5.6.2.3]	NA
UHGV-2144731_18	PHROG	phrog_239	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-2144731_18	UniRef90	UniRef90_A0A353J4N2	SF4 helicase domain-containing protein	NA
UHGV-2144731_18	eggNOG-mapper	476272.RUMHYD_02834	NA	NA
UHGV-2144731_18	Pfam	PF13155	Toprim-like	Toprim_2
UHGV-2144731_18	Pfam	PF13481	AAA domain	AAA_25
UHGV-2144731_18	COG	COG0305	Replicative DNA helicase	NA
UHGV-2144731_18	Structural annotation	PF03796, PF19898, MF_04154, TIGR03877, TIGR01391, COG0467, COG0358	NA	NA
UHGV-2144731_21	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-2144731_21	PHROG	phrog_116	DNA methyltransferase	other
UHGV-2144731_21	UniRef90	UniRef90_R5AC34	DNA (cytosine-5-)-methyltransferase	NA
UHGV-2144731_21	eggNOG-mapper	1121334.KB911073_gene1852	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-2144731_21	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-2144731_21	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-2144731_21	COG	COG0270	DNA-cytosine methylase	NA
UHGV-2144731_21	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-2144731_22	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-2144731_22	UniRef90	UniRef90_A0A1I0VIB3	MazG nucleotide pyrophosphohydrolase domain-containing protein	NA
UHGV-2144731_22	Structural annotation	PF11998, COG5420	NA	NA
UHGV-2144731_23	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2144731_23	UniRef90	UniRef90_A0A416N3D8	NA	NA
UHGV-2144731_23	eggNOG-mapper	1123075.AUDP01000020_gene1515	sigma factor activity	NA
UHGV-2144731_23	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-2144731_23	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-2144731_24	Structural annotation	PF10922, MF_00839	NA	NA
UHGV-2144731_25	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-2144731_25	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-2144731_25	UniRef90	UniRef90_A0A396NMY4	Terminase small subunit	NA
UHGV-2144731_25	eggNOG-mapper	476272.RUMHYD_01754	Terminase small subunit	NA
UHGV-2144731_25	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-2144731_25	COG	COG3728	Phage terminase, small subunit	NA
UHGV-2144731_25	Structural annotation	PF03592, COG3728	NA	NA
UHGV-2144731_26	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2144731_26	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-2144731_26	UniRef90	UniRef90_A0A396NWZ4	PBSX family phage terminase large subunit	NA
UHGV-2144731_26	eggNOG-mapper	536233.CLO_0881	Phage terminase, large subunit, PBSX family	NA
UHGV-2144731_26	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-2144731_26	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-2144731_26	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2144731_26	COG	COG1783	Phage terminase large subunit	NA
UHGV-2144731_26	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2144731_27	PHROG	phrog_533	portal protein	head and packaging
UHGV-2144731_27	UniRef90	UniRef90_R5ADJ4	Phage minor capsid protein	NA
UHGV-2144731_27	eggNOG-mapper	411490.ANACAC_00782	NA	NA
UHGV-2144731_27	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2144731_27	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2144731_28	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2144731_28	UniRef90	UniRef90_R5AIZ3	Minor capsid 2 protein	NA
UHGV-2144731_28	eggNOG-mapper	645991.Sgly_0338	NA	NA
UHGV-2144731_28	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2144731_28	COG	COG2369	NA	NA
UHGV-2144731_28	Structural annotation	PF06152	NA	NA
UHGV-2144731_29	Structural annotation	PF11344	NA	NA
UHGV-2144731_30	PHROG	phrog_15041	NA	unknown function
UHGV-2144731_30	eggNOG-mapper	478749.BRYFOR_07608	NA	NA
UHGV-2144731_32	PHROG	phrog_422	major head protein	head and packaging
UHGV-2144731_32	UniRef90	UniRef90_W0U896	Phage major capsid protein	NA
UHGV-2144731_32	eggNOG-mapper	1160721.RBI_II00538	NA	NA
UHGV-2144731_32	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-2144731_34	PHROG	phrog_541	head-tail adaptor	connector
UHGV-2144731_34	eggNOG-mapper	1120998.AUFC01000030_gene2237	NA	NA
UHGV-2144731_35	PHROG	phrog_3366	NA	unknown function
UHGV-2144731_35	Pfam	PF20536	NA	DUF6751
UHGV-2144731_35	Structural annotation	PF20536, COG1853	NA	NA
UHGV-2144731_36	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2144731_36	UniRef90	UniRef90_UPI000F63A4E5	minor capsid protein	NA
UHGV-2144731_36	eggNOG-mapper	1120998.AUFC01000030_gene2239	Minor capsid protein	NA
UHGV-2144731_36	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-2144731_36	Structural annotation	PF11114	NA	NA
UHGV-2144731_37	PHROG	phrog_3266	tail completion	connector
UHGV-2144731_37	UniRef90	UniRef90_A0A353IZQ8	Chloramphenicol resistance protein	NA
UHGV-2144731_37	eggNOG-mapper	1280692.AUJL01000004_gene841	NA	NA
UHGV-2144731_37	Structural annotation	PF12691	NA	NA
UHGV-2144731_38	PHROG	phrog_3099	NA	unknown function
UHGV-2144731_38	UniRef90	UniRef90_A0A0A8WE72	S-l_SbsC_C domain-containing protein	NA
UHGV-2144731_38	eggNOG-mapper	903814.ELI_3202	NA	NA
UHGV-2144731_38	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2144731_39	Structural annotation	PF20378	NA	NA
UHGV-2144731_40	PHROG	phrog_706	NA	unknown function
UHGV-2144731_40	UniRef90	UniRef90_UPI001D122605	bacteriophage Gp15 family protein	NA
UHGV-2144731_40	eggNOG-mapper	1151292.QEW_4528	Bacteriophage Gp15 protein	NA
UHGV-2144731_40	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-2144731_40	Structural annotation	PF06854	NA	NA
UHGV-2144731_41	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-2144731_41	eggNOG-mapper	536233.CLO_1577	tape measure	NA
UHGV-2144731_41	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-2144731_42	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-2144731_42	UniRef90	UniRef90_R5ADI0	Putative phage tail component	NA
UHGV-2144731_42	eggNOG-mapper	272562.CA_C0062	tail component	NA
UHGV-2144731_42	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-2144731_42	COG	COG4722	Phage-related protein YomH	NA
UHGV-2144731_42	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-2144731_43	PHROG	phrog_863	tail fiber assembly	tail
UHGV-2144731_43	UniRef90	UniRef90_A0A136WFR9	BppU_N domain-containing protein	NA
UHGV-2144731_43	eggNOG-mapper	1232449.BAHV02000010_gene2732	NA	NA
UHGV-2144731_43	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-2144731_43	Pfam	PF21722	Glycine-rich domain	Gly_rich_2
UHGV-2144731_43	Structural annotation	PF10651, PF21722, NF032891, COG2372	NA	NA
UHGV-2144731_45	PHROG	phrog_2310	NA	unknown function
UHGV-2144731_45	eggNOG-mapper	1391647.AVSV01000022_gene2576	NA	NA
UHGV-2144731_46	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-2144731_46	UniRef90	UniRef90_A0A396NSB6	Prophage_tail domain-containing protein	NA
UHGV-2144731_46	eggNOG-mapper	1443125.Z962_07985	Prophage endopeptidase tail	NA
UHGV-2144731_46	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-2144731_46	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-2144731_46	COG	COG4926	Phage-related protein	NA
UHGV-2144731_46	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-2144731_47	PHROG	phrog_937	hemolysin	other
UHGV-2144731_47	eggNOG-mapper	1519439.JPJG01000023_gene533	NA	NA
UHGV-2144731_49	PHROG	phrog_13256	NA	unknown function
UHGV-2144731_49	eggNOG-mapper	1226322.HMPREF1545_00166	NA	NA
UHGV-2144731_50	KOfam	K02395	flgJ; peptidoglycan hydrolase FlgJ	NA
UHGV-2144731_50	PHROG	phrog_3513	endolysin	lysis
UHGV-2144731_50	UniRef90	UniRef90_A0A396P8X6	LYZ2 domain-containing protein	NA
UHGV-2144731_50	eggNOG-mapper	1341157.RF007C_12385	mannosyl-glycoprotein	NA
UHGV-2144731_50	Pfam	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
UHGV-2144731_50	COG	COG1705	Flagellum-specific peptidoglycan hydrolase FlgJ	NA
UHGV-2144731_51	PHROG	phrog_13890	NA	unknown function
UHGV-2144731_51	eggNOG-mapper	1232453.BAIF02000002_gene1276	NA	NA
UHGV-2144731_51	Structural annotation	PF10723, NF010256, COG4877	NA	NA
UHGV-2144731_53	PHROG	phrog_4608	anti-repressor	transcription regulation
UHGV-2144731_53	UniRef90	UniRef90_A0A350TXK3	ORF6N domain-containing protein	NA
UHGV-2144731_53	eggNOG-mapper	1499683.CCFF01000014_gene3566	Phage regulatory protein	NA
UHGV-2144731_53	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-2144731_53	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-2144731_53	Structural annotation	PF10543, PF15188, MF_01506, TIGR02681, COG3646	NA	NA
UHGV-2144731_55	KOfam	K20974	K20974; two-component system, sensor histidine kinase [EC:2.7.13.3]	NA
UHGV-2144731_55	PHROG	phrog_20458	NA	unknown function
UHGV-2144731_55	UniRef90	UniRef90_A0A350TZJ0	Stage 0 sporulation protein A homolog (Fragment)	NA
UHGV-2144731_55	eggNOG-mapper	457412.RSAG_00853	His Kinase A (phosphoacceptor) domain	NA
UHGV-2144731_55	Pfam	PF00512	His Kinase A (phospho-acceptor) domain	HisKA
UHGV-2144731_55	Pfam	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase	HATPase_c
UHGV-2144731_55	Pfam	PF00072	Response regulator receiver domain	Response_reg
UHGV-2144731_55	COG	COG0642	Signal transduction histidine kinase	NA
UHGV-2144731_56	UniRef90	UniRef90_R5AAF5	Copper amine oxidase N-domain protein	NA
UHGV-2144731_56	eggNOG-mapper	511051.CSE_01360	amino acid activation for nonribosomal peptide biosynthetic process	NA
UHGV-2144731_56	Pfam	PF18998	Divergent InlB B-repeat domain	Flg_new_2
UHGV-2144731_56	Pfam	PF07833	Copper amine oxidase N-terminal domain	Cu_amine_oxidN1
UHGV-2144731_56	COG	COG1520	Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat	NA
UHGV-2144731_57	UniRef90	UniRef90_R5AFC3	Sigma70_r4_2 domain-containing protein	NA
UHGV-2144731_57	eggNOG-mapper	742741.HMPREF9475_01934	Sigma-70, region 4	NA
UHGV-2144731_57	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-2144731_57	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-2144731_57	Structural annotation	PF08281, MF_00245, TIGR02937, COG1595	NA	NA
UHGV-2144731_58	PHROG	phrog_20245	NA	unknown function
UHGV-2144731_58	UniRef90	UniRef90_R5A8Y2	Conjugative transposon protein	NA
UHGV-2144731_58	eggNOG-mapper	742741.HMPREF9475_02350	Helix-turn-helix domain	NA
UHGV-2144731_58	Pfam	PF12645	Helix-turn-helix domain	HTH_16
UHGV-2144731_58	Structural annotation	PF12645	NA	NA
UHGV-2144731_60	UniRef90	UniRef90_R5AFB6	HTH_17 domain-containing protein	NA
UHGV-2144731_60	eggNOG-mapper	537013.CLOSTMETH_01370	DNA binding domain, excisionase family	NA
UHGV-2144731_60	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-2144731_60	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-2144731_61	KOfam	K14059	int; integrase	NA
UHGV-2144731_61	PHROG	phrog_1	integrase	integration and excision
UHGV-2144731_61	UniRef90	UniRef90_A0A401LAE8	Site-specific integrase	NA
UHGV-2144731_61	eggNOG-mapper	657322.FPR_18670	Belongs to the 'phage' integrase family	NA
UHGV-2144731_61	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-2144731_61	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2144731_61	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2144731_61	Structural annotation	PF00589, PF14659, PF14657, MF_01808, TIGR02224, COG4974	NA	NA