UHGV-2145077

Genome information

vOTU vOTU-042043

Genome length 29,667 bps

CDS count 52

Completeness 76.26% (medium-quality)

geNomad score 0.9719

Prediction confidence Confident

Genome information
Genome ID	UHGV-2145077
vOTU ID	vOTU-042043
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029737\|Ga0245199_100429\|provirus_22489_52155
BioSample	SAMEA3449251
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	76.26% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9719
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	44.03
Jumbo phage	No

Genome content
Genome length	29,667 bps
GC content	37.65%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	93.48%
Average CDS length	537.52 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2145077_2	UniRef90	UniRef90_A0A4S2A7A9	NA	NA
UHGV-2145077_2	Structural annotation	PF03869, NF008671, COG4710	NA	NA
UHGV-2145077_3	eggNOG-mapper	1235802.C823_02864	NA	NA
UHGV-2145077_4	PHROG	phrog_1129	holin	lysis
UHGV-2145077_4	UniRef90	UniRef90_UPI001C124A7D	phage holin family protein	NA
UHGV-2145077_4	eggNOG-mapper	411460.RUMTOR_01325	Phage holin family Hol44, in holin superfamily V	NA
UHGV-2145077_4	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-2145077_4	Structural annotation	PF16079	NA	NA
UHGV-2145077_5	PHROG	phrog_4105	NA	unknown function
UHGV-2145077_6	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2145077_6	PHROG	phrog_7698	endolysin	lysis
UHGV-2145077_6	UniRef90	UniRef90_UPI0009861559	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2145077_6	eggNOG-mapper	293826.Amet_2548	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2145077_6	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-2145077_6	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-2145077_6	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-2145077_8	PHROG	phrog_1220	head protein	head and packaging
UHGV-2145077_8	eggNOG-mapper	588581.Cpap_1262	COG NOG18825 non supervised orthologous group	NA
UHGV-2145077_9	PHROG	phrog_538	minor tail protein	tail
UHGV-2145077_9	UniRef90	UniRef90_UPI0004813F81	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-2145077_9	eggNOG-mapper	742740.HMPREF9474_02260	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-2145077_9	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-2145077_9	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-2145077_10	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-2145077_10	UniRef90	UniRef90_A0A6N7STN1	Phage tail family protein	NA
UHGV-2145077_10	eggNOG-mapper	411460.RUMTOR_01334	COG NOG18823 non supervised orthologous group	NA
UHGV-2145077_10	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-2145077_10	COG	COG4722	Phage-related protein YomH	NA
UHGV-2145077_10	Structural annotation	PF20753, PF16774, TIGR01633, COG4722	NA	NA
UHGV-2145077_11	KOfam	K16461	CEP135, CEP4; centrosomal protein CEP135	NA
UHGV-2145077_11	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-2145077_11	UniRef90	UniRef90_UPI001EDCC813	phage tail tape measure protein	NA
UHGV-2145077_11	eggNOG-mapper	908340.HMPREF9406_2570	Phage tail tape measure protein TP901	NA
UHGV-2145077_11	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-2145077_11	COG	COG5280	Phage-related minor tail protein	NA
UHGV-2145077_11	Structural annotation	COG5280	NA	NA
UHGV-2145077_14	PHROG	phrog_88	major tail protein	tail
UHGV-2145077_14	UniRef90	UniRef90_A0A843GGC8	S-l_SbsC_C domain-containing protein	NA
UHGV-2145077_14	eggNOG-mapper	1329516.JPST01000017_gene420	Phage tail tube protein	NA
UHGV-2145077_14	Pfam	PF04630	Phage tail tube protein	Phage_TTP_1
UHGV-2145077_14	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-2145077_14	COG	COG5492	NA	NA
UHGV-2145077_14	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-2145077_15	Structural annotation	PF05657	NA	NA
UHGV-2145077_16	Structural annotation	TIGR01725	NA	NA
UHGV-2145077_17	UniRef90	UniRef90_A0A843GET6	Phage head closure protein	NA
UHGV-2145077_17	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2145077_18	UniRef90	UniRef90_A0A843GGX3	Phage head-tail connector protein	NA
UHGV-2145077_18	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-2145077_19	PHROG	phrog_10	major head protein	head and packaging
UHGV-2145077_19	UniRef90	UniRef90_A0A1M6DQ36	Phage major capsid protein, HK97 family	NA
UHGV-2145077_19	eggNOG-mapper	397290.C810_00421	phage major capsid protein, HK97 family	NA
UHGV-2145077_19	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2145077_19	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2145077_19	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2145077_19	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2145077_20	PHROG	phrog_10	major head protein	head and packaging
UHGV-2145077_20	eggNOG-mapper	397290.C810_00421	phage major capsid protein, HK97 family	NA
UHGV-2145077_20	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2145077_21	KOfam	K06904	NA	NA
UHGV-2145077_21	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-2145077_21	UniRef90	UniRef90_A0A6N2W9T5	Caudovirus prohead protease	NA
UHGV-2145077_21	eggNOG-mapper	1123263.AUKY01000046_gene468	Phage prohead protease, HK97 family	NA
UHGV-2145077_21	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-2145077_21	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-2145077_21	COG	COG3740	Phage head maturation protease	NA
UHGV-2145077_21	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-2145077_22	PHROG	phrog_12	portal protein	head and packaging
UHGV-2145077_22	UniRef90	UniRef90_UPI00156EE181	phage portal protein	NA
UHGV-2145077_22	eggNOG-mapper	1157490.EL26_20720	Phage portal protein	NA
UHGV-2145077_22	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2145077_22	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2145077_22	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-2145077_23	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2145077_23	UniRef90	UniRef90_UPI001D10BBFC	terminase large subunit	NA
UHGV-2145077_23	eggNOG-mapper	1211817.CCAT010000007_gene1040	Terminase	NA
UHGV-2145077_23	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2145077_23	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2145077_23	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2145077_23	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-2145077_24	PHROG	phrog_1066	NA	unknown function
UHGV-2145077_24	eggNOG-mapper	1211817.CCAT010000007_gene1041	NA	NA
UHGV-2145077_25	PHROG	phrog_4581	terminase small subunit	head and packaging
UHGV-2145077_25	UniRef90	UniRef90_UPI001D11694A	HNH endonuclease	NA
UHGV-2145077_25	eggNOG-mapper	1536769.P40081_01050	HNH nucleases	NA
UHGV-2145077_25	Pfam	PF01844	HNH endonuclease	HNH
UHGV-2145077_25	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2145077_25	Structural annotation	PF13671, MF_03171, NF005251, NF008448, COG4639	NA	NA
UHGV-2145077_26	eggNOG-mapper	1410653.JHVC01000011_gene998	NA	NA
UHGV-2145077_28	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-2145077_28	UniRef90	UniRef90_A0A6B9SX71	Transposase/terminase small subunit	NA
UHGV-2145077_28	eggNOG-mapper	1347393.HG726021_gene488	transposase activity	NA
UHGV-2145077_28	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-2145077_28	Structural annotation	PF07141	NA	NA
UHGV-2145077_29	PHROG	phrog_11237	NA	unknown function
UHGV-2145077_29	eggNOG-mapper	610130.Closa_0738	NA	NA
UHGV-2145077_34	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-2145077_34	PHROG	phrog_116	DNA methyltransferase	other
UHGV-2145077_34	UniRef90	UniRef90_A0A6N9QF69	DNA (cytosine-5-)-methyltransferase	NA
UHGV-2145077_34	eggNOG-mapper	1408823.AXUS01000047_gene2901	C-5 cytosine-specific DNA methylase	NA
UHGV-2145077_34	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-2145077_34	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-2145077_34	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-2145077_34	COG	COG0270	DNA-cytosine methylase	NA
UHGV-2145077_34	Structural annotation	PF00145, MF_00786, TIGR00675, COG0270	NA	NA
UHGV-2145077_35	PHROG	phrog_824	NA	unknown function
UHGV-2145077_35	UniRef90	UniRef90_A0A7G8TE01	VRR-NUC domain-containing protein	NA
UHGV-2145077_35	eggNOG-mapper	1291050.JAGE01000001_gene480	VRR_NUC	NA
UHGV-2145077_35	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-2145077_35	Structural annotation	PF08774	NA	NA
UHGV-2145077_36	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2145077_36	eggNOG-mapper	1415775.U729_1544	NA	NA
UHGV-2145077_36	Structural annotation	PF21578, NF033538	NA	NA
UHGV-2145077_39	Structural annotation	PF21596	NA	NA
UHGV-2145077_40	eggNOG-mapper	526218.Sterm_0798	NA	NA
UHGV-2145077_44	UniRef90	UniRef90_A0A3E3JYG3	Lactate permease	NA
UHGV-2145077_44	Structural annotation	PF08679, MF_01177, NF038268, COG1846	NA	NA
UHGV-2145077_45	PHROG	phrog_643	transcriptional regulator	transcription regulation
UHGV-2145077_45	UniRef90	UniRef90_UPI00148CD1FB	aspartate ammonia-lyase	NA
UHGV-2145077_45	eggNOG-mapper	1405498.SSIM_05025	NA	NA
UHGV-2145077_45	Structural annotation	PF11195	NA	NA
UHGV-2145077_47	UniRef90	UniRef90_A0A8J6IK44	XRE family transcriptional regulator	NA
UHGV-2145077_47	eggNOG-mapper	1347392.CCEZ01000005_gene1206	NA	NA
UHGV-2145077_47	Structural annotation	PF05339, NF041951, COG1476	NA	NA
UHGV-2145077_48	PHROG	phrog_1305	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2145077_48	UniRef90	UniRef90_UPI001D033BDD	NA	NA
UHGV-2145077_48	eggNOG-mapper	626523.GCWU000342_01044	NA	NA
UHGV-2145077_48	Pfam	PF13643	NA	DUF4145
UHGV-2145077_48	Structural annotation	COG2250	NA	NA
UHGV-2145077_49	PHROG	phrog_14088	NA	unknown function
UHGV-2145077_49	UniRef90	UniRef90_A0A3E5GTA5	Carboxypeptidase	NA
UHGV-2145077_49	eggNOG-mapper	1235802.C823_04730	NA	NA
UHGV-2145077_50	Structural annotation	PF09202, MF_01819, NF008565, COG3432	NA	NA
UHGV-2145077_51	PHROG	phrog_582	Arc-like repressor	transcription regulation
UHGV-2145077_51	UniRef90	UniRef90_UPI0012B58364	Arc family DNA-binding protein	NA
UHGV-2145077_51	Pfam	PF05534	HicB family	HicB
UHGV-2145077_51	Structural annotation	PF03869, NF041793, COG4877	NA	NA
UHGV-2145077_52	UniRef90	UniRef90_A0A318KGW5	ParD-like antitoxin of type II ParDE toxin-antitoxin system	NA
UHGV-2145077_52	Structural annotation	PF03869, TIGR04563, COG4877	NA	NA