UHGV-2145923

Genome information

Genome length 40,311 bps

CDS count 56

Completeness 58.59% (medium-quality)

geNomad score 0.9568

Prediction confidence Confident

Genome information
Genome ID	UHGV-2145923
vOTU ID	vOTU-015748
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029719\|Ga0245179_1000297\|provirus_14420_54730
BioSample	NA
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	58.59% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9568
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.96
Jumbo phage	No

Genome content
Genome length	40,311 bps
GC content	34.28%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	88.84%
Average CDS length	641.73 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2145923_6	PHROG	phrog_15439	peptidase	other
UHGV-2145923_6	eggNOG-mapper	756499.Desde_4127	tail collar domain protein	NA
UHGV-2145923_6	COG	COG4675	Phage tail collar domain	NA
UHGV-2145923_8	Structural annotation	PF09097, COG3500	NA	NA
UHGV-2145923_11	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2145923_14	PHROG	phrog_422	major head protein	head and packaging
UHGV-2145923_14	UniRef90	UniRef90_E0IBT4	Putative phage major capsid protein	NA
UHGV-2145923_14	eggNOG-mapper	717606.PaecuDRAFT_3123	NA	NA
UHGV-2145923_15	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-2145923_15	UniRef90	UniRef90_UPI0008DA37CF	phage scaffolding protein	NA
UHGV-2145923_15	eggNOG-mapper	363555.Q20DD5_9CAUD	viral scaffold	NA
UHGV-2145923_15	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-2145923_17	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2145923_17	eggNOG-mapper	1262449.CP6013_3193	Phage minor capsid protein 2	NA
UHGV-2145923_17	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2145923_17	Pfam	PF15542	Bacterial toxin 50	Ntox50
UHGV-2145923_17	COG	COG2369	NA	NA
UHGV-2145923_18	PHROG	phrog_533	portal protein	head and packaging
UHGV-2145923_18	eggNOG-mapper	945712.CULC22_01689	Phage portal protein, SPP1 Gp6-like	NA
UHGV-2145923_18	Structural annotation	PF05133, MF_04120, TIGR01542, COG3567	NA	NA
UHGV-2145923_19	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2145923_19	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-2145923_19	UniRef90	UniRef90_A0A1H3F9U6	Phage terminase, large subunit, PBSX family	NA
UHGV-2145923_19	eggNOG-mapper	203119.Cthe_2474	Phage terminase, large subunit, PBSX family	NA
UHGV-2145923_19	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-2145923_19	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2145923_19	COG	COG1783	Phage terminase large subunit	NA
UHGV-2145923_19	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2145923_20	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-2145923_20	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-2145923_20	UniRef90	UniRef90_A0A429X2T2	Terminase small subunit	NA
UHGV-2145923_20	eggNOG-mapper	1462526.BN990_03868	Terminase small subunit	NA
UHGV-2145923_20	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-2145923_20	COG	COG3728	Phage terminase, small subunit	NA
UHGV-2145923_20	Structural annotation	PF03592, COG3728	NA	NA
UHGV-2145923_21	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2145923_21	Pfam	PF07374	NA	DUF1492
UHGV-2145923_23	PHROG	phrog_8470	NA	unknown function
UHGV-2145923_23	UniRef90	UniRef90_A0A843HNH2	PcfJ domain-containing protein	NA
UHGV-2145923_23	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-2145923_24	PHROG	phrog_7445	NA	unknown function
UHGV-2145923_24	eggNOG-mapper	742766.HMPREF9455_01852	PcfK-like protein	NA
UHGV-2145923_24	Pfam	PF14058	PcfK-like protein	PcfK
UHGV-2145923_24	Structural annotation	PF14058	NA	NA
UHGV-2145923_25	KOfam	K02338	dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]	NA
UHGV-2145923_25	PHROG	phrog_947	DNA polymerase processivity factor	DNA, RNA and nucleotide metabolism
UHGV-2145923_25	COG	COG0592	DNA polymerase III sliding clamp (beta) subunit, PCNA homolog	NA
UHGV-2145923_26	PHROG	phrog_11769	NA	unknown function
UHGV-2145923_26	UniRef90	UniRef90_A0A1B1KZF0	Phage_rep_org_N domain-containing protein	NA
UHGV-2145923_26	eggNOG-mapper	536232.CLM_1634	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-2145923_26	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-2145923_26	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-2145923_26	Structural annotation	PF09681, TIGR01714, COG3355	NA	NA
UHGV-2145923_27	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-2145923_27	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-2145923_27	UniRef90	UniRef90_A0A843GS17	Lactamase_B domain-containing protein	NA
UHGV-2145923_27	eggNOG-mapper	764561.D7RWG0_9CAUD	hydrolase activity	NA
UHGV-2145923_27	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-2145923_27	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-2145923_28	PHROG	phrog_2185	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2145923_28	UniRef90	UniRef90_R7GFF2	Putative phage protein	NA
UHGV-2145923_28	eggNOG-mapper	665959.HMPREF1013_05342	NA	NA
UHGV-2145923_28	Structural annotation	NF007351, COG3723	NA	NA
UHGV-2145923_30	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-2145923_30	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2145923_30	UniRef90	UniRef90_A0A6N7S5U7	AAA family ATPase	NA
UHGV-2145923_30	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-2145923_31	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-2145923_31	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-2145923_31	UniRef90	UniRef90_A0A7C6NYG1	BRO family protein	NA
UHGV-2145923_31	eggNOG-mapper	857293.CAAU_0907	Phage antirepressor protein	NA
UHGV-2145923_31	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-2145923_31	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-2145923_31	COG	COG3617	Prophage antirepressor	NA
UHGV-2145923_31	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-2145923_33	PHROG	phrog_5079	NA	unknown function
UHGV-2145923_33	eggNOG-mapper	1120978.KB894083_gene926	NA	NA
UHGV-2145923_34	PHROG	phrog_1233	NA	unknown function
UHGV-2145923_34	UniRef90	UniRef90_A0A2T4KE45	Peptidase_M78 domain-containing protein	NA
UHGV-2145923_34	Structural annotation	PF06114	NA	NA
UHGV-2145923_35	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-2145923_35	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-2145923_37	eggNOG-mapper	537007.BLAHAN_05459	NA	NA
UHGV-2145923_39	KOfam	K18831	higA; HTH-type transcriptional regulator / antitoxin HigA	NA
UHGV-2145923_39	UniRef90	UniRef90_UPI001CFCDD74	helix-turn-helix transcriptional regulator	NA
UHGV-2145923_39	eggNOG-mapper	1121289.JHVL01000079_gene1187	Helix-turn-helix XRE-family like proteins	NA
UHGV-2145923_39	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-2145923_39	Structural annotation	PF13443, NF041951, COG1396	NA	NA
UHGV-2145923_42	eggNOG-mapper	760568.Desku_0919	NA	NA
UHGV-2145923_42	Structural annotation	PF03787, TIGR02581, COG1604	NA	NA
UHGV-2145923_49	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-2145923_49	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2145923_49	UniRef90	UniRef90_UPI000BA73015	helix-turn-helix domain-containing protein	NA
UHGV-2145923_49	eggNOG-mapper	537874.B3GVX0_9CAUD	sequence-specific DNA binding	NA
UHGV-2145923_49	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2145923_49	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-2145923_51	PHROG	phrog_2695	NA	unknown function
UHGV-2145923_51	UniRef90	UniRef90_A0A2N1QJH9	SIR2_2 domain-containing protein	NA
UHGV-2145923_51	eggNOG-mapper	1410661.JNKW01000001_gene473	SIR2-like domain	NA
UHGV-2145923_51	PADLOC	Sirtuin_Blast2	NA	NA
UHGV-2145923_51	Pfam	PF13289	SIR2-like domain	SIR2_2
UHGV-2145923_51	COG	COG0846	NAD-dependent protein deacetylase, SIR2 family	NA
UHGV-2145923_51	Structural annotation	PF13289	NA	NA
UHGV-2145923_52	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-2145923_52	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2145923_54	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-2145923_54	PHROG	phrog_95	integrase	integration and excision
UHGV-2145923_54	UniRef90	UniRef90_A0A847BS46	Recombinase family protein	NA
UHGV-2145923_54	eggNOG-mapper	521098.Aaci_0463	COG1961 Site-specific recombinases, DNA invertase Pin homologs	NA
UHGV-2145923_54	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-2145923_54	Pfam	PF07508	Recombinase	Recombinase
UHGV-2145923_54	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-2145923_54	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2145923_54	Structural annotation	PF00239, PF13408, PF14235, NF041201, COG1961, COG1579	NA	NA
UHGV-2145923_55	KOfam	K04772	degQ, hhoA; serine protease DegQ [EC:3.4.21.-]	NA
UHGV-2145923_55	PHROG	phrog_11383	NA	unknown function
UHGV-2145923_55	UniRef90	UniRef90_A0A1Q6MA03	PDZ domain-containing protein	NA
UHGV-2145923_55	eggNOG-mapper	645991.Sgly_0982	PDZ DHR GLGF domain protein	NA
UHGV-2145923_55	Pfam	PF13365	Trypsin-like peptidase domain	Trypsin_2
UHGV-2145923_55	Pfam	PF13180	PDZ domain	PDZ_2
UHGV-2145923_55	COG	COG0265	Periplasmic serine protease, S1-C subfamily, contain C-terminal PDZ domain	NA
UHGV-2145923_56	KOfam	K08372	pepD; putative serine protease PepD [EC:3.4.21.-]	NA
UHGV-2145923_56	PHROG	phrog_11383	NA	unknown function
UHGV-2145923_56	UniRef90	UniRef90_R7GCJ0	2-alkenal reductase	NA
UHGV-2145923_56	eggNOG-mapper	1089548.KI783301_gene3166	peptidase S1 and S6 chymotrypsin Hap	NA
UHGV-2145923_56	PADLOC	retron_type_XI_RT_typeXI	single gene	Retron
UHGV-2145923_56	Pfam	PF13365	Trypsin-like peptidase domain	Trypsin_2
UHGV-2145923_56	COG	COG0265	Periplasmic serine protease, S1-C subfamily, contain C-terminal PDZ domain	NA