UHGV-2145937

Genome information

vOTU vOTU-019351

Genome length 34,115 bps

CDS count 49

Completeness 81.88% (medium-quality)

geNomad score 0.9671

Prediction confidence Confident

Genome information
Genome ID	UHGV-2145937
vOTU ID	vOTU-019351
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029719\|Ga0245179_1000514\|provirus_122_34236
BioSample	SAMEA3449231
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	81.88% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9671
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	14.07
Jumbo phage	No

Genome content
Genome length	34,115 bps
GC content	45.43%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	94.57%
Average CDS length	661.96 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2145937_1	PHROG	phrog_1129	holin	lysis
UHGV-2145937_1	UniRef90	UniRef90_A0A316QDA6	Enolase	NA
UHGV-2145937_1	eggNOG-mapper	411473.RUMCAL_01944	Phage holin family Hol44, in holin superfamily V	NA
UHGV-2145937_1	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-2145937_2	Structural annotation	PF07328, NF001949	NA	NA
UHGV-2145937_5	PHROG	phrog_13589	NA	unknown function
UHGV-2145937_5	eggNOG-mapper	411471.SUBVAR_06929	ATPase involved in DNA repair	NA
UHGV-2145937_5	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-2145937_6	PHROG	phrog_25979	NA	unknown function
UHGV-2145937_6	eggNOG-mapper	1203606.HMPREF1526_02029	Collagen triple helix repeat (20 copies)	NA
UHGV-2145937_6	COG	COG1409	3',5'-cyclic AMP phosphodiesterase CpdA	NA
UHGV-2145937_7	PHROG	phrog_14770	NA	unknown function
UHGV-2145937_7	UniRef90	UniRef90_A0A4R2L561	SNF2 domain-containing protein	NA
UHGV-2145937_7	eggNOG-mapper	268407.PWYN_12490	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis	NA
UHGV-2145937_7	Pfam	PF18857	Large polyvalent protein associated domain 38	LPD38
UHGV-2145937_7	COG	COG0503	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	NA
UHGV-2145937_8	eggNOG-mapper	1203606.HMPREF1526_02741	NA	NA
UHGV-2145937_10	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-2145937_10	eggNOG-mapper	1519439.JPJG01000060_gene1903	NA	NA
UHGV-2145937_11	PHROG	phrog_12105	NA	unknown function
UHGV-2145937_12	PHROG	phrog_15239	NA	unknown function
UHGV-2145937_12	eggNOG-mapper	1507.HMPREF0262_03462	NA	NA
UHGV-2145937_13	PHROG	phrog_1357	major head protein	head and packaging
UHGV-2145937_13	UniRef90	UniRef90_UPI001CF832E1	N4-gp56 family major capsid protein	NA
UHGV-2145937_13	eggNOG-mapper	1449126.JQKL01000003_gene1695	NA	NA
UHGV-2145937_13	Pfam	PF13252	NA	DUF4043
UHGV-2145937_13	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-2145937_13	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-2145937_14	PHROG	phrog_13908	NA	unknown function
UHGV-2145937_14	eggNOG-mapper	1410650.JHWL01000003_gene2831	NA	NA
UHGV-2145937_15	KOfam	K07584	NA	NA
UHGV-2145937_15	PHROG	phrog_4478	peptidase	other
UHGV-2145937_15	UniRef90	UniRef90_UPI00102FFAFD	ribosomal-processing cysteine protease Prp	NA
UHGV-2145937_15	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-2145937_15	COG	COG2868	NA	NA
UHGV-2145937_15	Structural annotation	PF04327, NF011124, COG2868	NA	NA
UHGV-2145937_16	PHROG	phrog_156	portal protein	head and packaging
UHGV-2145937_16	UniRef90	UniRef90_A0A2K9P4K6	Sigma-70 region 2	NA
UHGV-2145937_16	eggNOG-mapper	1507.HMPREF0262_03465	NA	NA
UHGV-2145937_16	Structural annotation	PF16510, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-2145937_17	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2145937_17	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-2145937_17	UniRef90	UniRef90_A0A7U9NMD5	Phage terminase, large subunit, PBSX family	NA
UHGV-2145937_17	eggNOG-mapper	1507.HMPREF0262_03468	NA	NA
UHGV-2145937_17	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-2145937_17	COG	COG1783	Phage terminase large subunit	NA
UHGV-2145937_17	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-2145937_18	PHROG	phrog_2412	NA	unknown function
UHGV-2145937_18	UniRef90	UniRef90_UPI0011CC13F5	stress-induced protein	NA
UHGV-2145937_18	eggNOG-mapper	1122981.AUME01000026_gene531	NA	NA
UHGV-2145937_19	PHROG	phrog_1233	NA	unknown function
UHGV-2145937_19	eggNOG-mapper	936375.HMPREF1152_1074	NA	NA
UHGV-2145937_20	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2145937_20	UniRef90	UniRef90_UPI00046D5C6A	NA	NA
UHGV-2145937_20	eggNOG-mapper	1120978.KB894081_gene99	NA	NA
UHGV-2145937_20	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-2145937_20	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-2145937_21	eggNOG-mapper	1232449.BAHV02000016_gene1829	NA	NA
UHGV-2145937_23	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2145937_23	UniRef90	UniRef90_A0A6N7XIA3	NA	NA
UHGV-2145937_23	eggNOG-mapper	742767.HMPREF9456_03412	NA	NA
UHGV-2145937_23	Pfam	PF06356	NA	DUF1064
UHGV-2145937_23	Structural annotation	PF06356	NA	NA
UHGV-2145937_24	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-2145937_24	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-2145937_24	UniRef90	UniRef90_A0A5B9YBT3	AAA family ATPase	NA
UHGV-2145937_24	eggNOG-mapper	1111454.HMPREF1250_0279	DNA replication protein	NA
UHGV-2145937_24	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-2145937_24	COG	COG1484	DNA replication protein DnaC	NA
UHGV-2145937_24	Structural annotation	PF01695, MF_00377, NF005378, COG1484	NA	NA
UHGV-2145937_25	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2145937_25	eggNOG-mapper	1519439.JPJG01000051_gene720	HNH endonuclease	NA
UHGV-2145937_25	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2145937_25	Structural annotation	PF07261, PF09681, MF_01177, TIGR01446, TIGR01714, COG3935	NA	NA
UHGV-2145937_26	PHROG	phrog_2113	NA	unknown function
UHGV-2145937_27	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-2145937_27	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2145937_27	UniRef90	UniRef90_A0A316Q8B3	Single-stranded DNA-binding protein	NA
UHGV-2145937_27	eggNOG-mapper	332101.JIBU02000034_gene1839	Single-stranded DNA-binding protein	NA
UHGV-2145937_27	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2145937_27	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-2145937_27	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2145937_27	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-2145937_27	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-2145937_28	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-2145937_28	eggNOG-mapper	1304866.K413DRAFT_1197	NA	NA
UHGV-2145937_28	Structural annotation	PF05772, NF007281	NA	NA
UHGV-2145937_29	PHROG	phrog_14970	NA	unknown function
UHGV-2145937_29	UniRef90	UniRef90_A0A1C5NV07	DNA damage response protein A	NA
UHGV-2145937_29	eggNOG-mapper	1226322.HMPREF1545_04073	double-strand break repair protein	NA
UHGV-2145937_29	Pfam	PF04098	Rad52/22 family double-strand break repair protein	Rad52_Rad22
UHGV-2145937_29	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-2145937_29	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-2145937_37	UniRef90	UniRef90_A0A2K9P6P6	Transcriptional regulator	NA
UHGV-2145937_37	eggNOG-mapper	1158602.I590_00676	Helix-turn-helix XRE-family like proteins	NA
UHGV-2145937_37	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2145937_37	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-2145937_38	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2145937_38	UniRef90	UniRef90_M9LLS5	Predicted transcriptional regulator	NA
UHGV-2145937_38	eggNOG-mapper	697284.ERIC2_c08460	Transcriptional	NA
UHGV-2145937_38	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2145937_38	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2145937_38	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-2145937_41	UniRef90	UniRef90_A0A4S2AFF4	Arc family DNA-binding protein	NA
UHGV-2145937_42	UniRef90	UniRef90_A0A120MKI2	Arc domain-containing protein	NA
UHGV-2145937_42	eggNOG-mapper	1122947.FR7_3735	NA	NA
UHGV-2145937_42	Structural annotation	PF03869, NF008671, COG4877	NA	NA
UHGV-2145937_43	UniRef90	UniRef90_A0A4S2AGE3	Ribbon-helix-helix protein, CopG family	NA
UHGV-2145937_44	eggNOG-mapper	756499.Desde_3141	Bacterial Ig-like domain 2	NA
UHGV-2145937_44	NCBIFam	NF033223.2	YHYH domain-containing protein	NA
UHGV-2145937_44	COG	COG5492	NA	NA
UHGV-2145937_45	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2145937_45	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2145937_45	UniRef90	UniRef90_A0A3A5IJE4	HTH cro/C1-type domain-containing protein	NA
UHGV-2145937_45	eggNOG-mapper	411467.BACCAP_02820	Cro/C1-type HTH DNA-binding domain	NA
UHGV-2145937_45	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2145937_45	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-2145937_45	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-2145937_46	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2145937_46	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2145937_46	UniRef90	UniRef90_A0A3P5Y8X7	HTH-type transcriptional regulator Xre	NA
UHGV-2145937_46	eggNOG-mapper	1123302.KB904185_gene789	sequence-specific DNA binding	NA
UHGV-2145937_46	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-2145937_46	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2145937_46	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-2145937_46	NCBIFam	NF041951.1	RstR family transcriptional repressor	NA
UHGV-2145937_46	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-2145937_47	PHROG	phrog_19315	NA	unknown function
UHGV-2145937_47	UniRef90	UniRef90_A0A316QEN1	Peptidase_M78 domain-containing protein	NA
UHGV-2145937_47	eggNOG-mapper	1449050.JNLE01000003_gene3644	domain protein	NA
UHGV-2145937_47	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-2145937_47	COG	COG2333	DNA uptake channel protein ComEC C-terminal domain, metallo-beta-lactamase superfamily	NA
UHGV-2145937_47	Structural annotation	PF06114, COG2856	NA	NA
UHGV-2145937_48	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-2145937_49	KOfam	K14059	int; integrase	NA
UHGV-2145937_49	PHROG	phrog_1	integrase	integration and excision
UHGV-2145937_49	UniRef90	UniRef90_A0A316QG14	Tyr recombinase domain-containing protein	NA
UHGV-2145937_49	eggNOG-mapper	1514668.JOOA01000001_gene242	Phage integrase family	NA
UHGV-2145937_49	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2145937_49	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2145937_49	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA