UHGV-2146191

Genome information

Genome length 32,899 bps

CDS count 48

Completeness 94.44% (high-quality)

geNomad score 0.9804

Prediction confidence Confident

Genome information
Genome ID	UHGV-2146191
vOTU ID	vOTU-061776
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029743\|Ga0245246_100039\|provirus_106028_138926
BioSample	SAMEA3449297
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	94.44% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9804
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	44.74
Jumbo phage	No

Genome content
Genome length	32,899 bps
GC content	56.40%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	48
CDS density	93.03%
Average CDS length	639.25 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2146191_1	KOfam	K14059	int; integrase	NA
UHGV-2146191_1	PHROG	phrog_1	integrase	integration and excision
UHGV-2146191_1	UniRef90	UniRef90_A0A2Z4QB94	Tyr recombinase domain-containing protein	NA
UHGV-2146191_1	eggNOG-mapper	626523.GCWU000342_00320	Belongs to the 'phage' integrase family	NA
UHGV-2146191_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2146191_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2146191_1	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-2146191_2	PHROG	phrog_11623	NA	unknown function
UHGV-2146191_2	UniRef90	UniRef90_A0A7X8K2Z3	NA	NA
UHGV-2146191_2	eggNOG-mapper	1111121.HMPREF1247_1100	Cold shock	NA
UHGV-2146191_2	Pfam	PF12873	NA	DUF3825
UHGV-2146191_2	COG	COG1278	Cold shock protein, CspA family	NA
UHGV-2146191_2	Structural annotation	PF12873	NA	NA
UHGV-2146191_3	eggNOG-mapper	1262449.CP6013_2082	NA	NA
UHGV-2146191_4	KOfam	K07448	mrr; restriction system protein	NA
UHGV-2146191_4	PHROG	phrog_19856	NA	unknown function
UHGV-2146191_4	UniRef90	UniRef90_UPI001294DFE1	restriction endonuclease	NA
UHGV-2146191_4	eggNOG-mapper	1235790.C805_00010	Restriction endonuclease	NA
UHGV-2146191_4	PADLOC	ZorD1_00005	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-2146191_4	Pfam	PF04471	Restriction endonuclease	Mrr_cat
UHGV-2146191_4	COG	COG1787	Endonuclease, HJR/Mrr/RecB family	NA
UHGV-2146191_4	Structural annotation	PF04471, MF_00722, NF040854, COG1787	NA	NA
UHGV-2146191_5	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-2146191_5	UniRef90	UniRef90_R5AVU4	CI-like repressor	NA
UHGV-2146191_5	eggNOG-mapper	1120971.AUCA01000073_gene2914	Cro/C1-type HTH DNA-binding domain	NA
UHGV-2146191_5	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-2146191_5	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-2146191_5	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-2146191_7	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2146191_7	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-2146191_7	UniRef90	UniRef90_K1UM29	Helix-turn-helix domain protein (Fragment)	NA
UHGV-2146191_7	eggNOG-mapper	903814.ELI_1263	Helix-turn-helix domain	NA
UHGV-2146191_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2146191_7	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2146191_7	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-2146191_10	PHROG	phrog_750	NA	unknown function
UHGV-2146191_10	Structural annotation	PF13835, NF040858	NA	NA
UHGV-2146191_11	PHROG	phrog_585	NA	unknown function
UHGV-2146191_11	Pfam	PF10711	NA	DUF2513
UHGV-2146191_12	Structural annotation	PF21291, TIGR03070, COG3655	NA	NA
UHGV-2146191_13	KOfam	K06284	abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes	NA
UHGV-2146191_13	PHROG	phrog_4681	antitoxin from a toxin-antitoxin system	moron, auxiliary metabolic gene and host takeover
UHGV-2146191_13	UniRef90	UniRef90_A0A2N2DP50	AbrB family transcriptional regulator	NA
UHGV-2146191_13	eggNOG-mapper	1042163.BRLA_c033230	Regulators of stationary sporulation gene expression	NA
UHGV-2146191_13	Pfam	PF04014	Antidote-toxin recognition MazE, bacterial antitoxin	MazE_antitoxin
UHGV-2146191_13	NCBIFam	TIGR01439.1	transcriptional regulator, AbrB family	NA
UHGV-2146191_13	COG	COG2002	Bifunctional DNA-binding transcriptional regulator of stationary/sporulation/toxin gene expression and antitoxin component of the YhaV-PrlF toxin-antitoxin module	NA
UHGV-2146191_13	Structural annotation	PF15937, TIGR01439, NF004424, COG2002	NA	NA
UHGV-2146191_16	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2146191_16	eggNOG-mapper	411470.RUMGNA_02047	NA	NA
UHGV-2146191_16	Structural annotation	PF21578	NA	NA
UHGV-2146191_17	KOfam	K03700	recU; recombination protein U	NA
UHGV-2146191_17	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2146191_17	UniRef90	UniRef90_A0A1H0W5Y9	Holliday junction resolvase RecU	NA
UHGV-2146191_17	eggNOG-mapper	537013.CLOSTMETH_01720	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-2146191_17	Pfam	PF03838	Recombination protein U	RecU
UHGV-2146191_17	COG	COG3331	Penicillin-binding protein-related factor A, putative recombinase	NA
UHGV-2146191_17	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-2146191_18	eggNOG-mapper	1232449.BAHV02000016_gene1829	NA	NA
UHGV-2146191_19	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-2146191_19	PHROG	phrog_116	DNA methyltransferase	other
UHGV-2146191_19	UniRef90	UniRef90_A0A350THX9	DNA (cytosine-5-)-methyltransferase	NA
UHGV-2146191_19	eggNOG-mapper	1121334.KB911073_gene1852	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-2146191_19	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-2146191_19	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-2146191_19	COG	COG0270	DNA-cytosine methylase	NA
UHGV-2146191_19	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-2146191_20	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-2146191_20	UniRef90	UniRef90_R6MCS9	NA	NA
UHGV-2146191_20	eggNOG-mapper	1519439.JPJG01000059_gene1910	NA	NA
UHGV-2146191_21	PHROG	phrog_1029	NA	unknown function
UHGV-2146191_21	eggNOG-mapper	1203606.HMPREF1526_01890	NA	NA
UHGV-2146191_21	Structural annotation	PF10065, COG5532	NA	NA
UHGV-2146191_22	PHROG	phrog_5781	NA	unknown function
UHGV-2146191_22	UniRef90	UniRef90_A0A810Q4L2	NA	NA
UHGV-2146191_22	eggNOG-mapper	573061.Clocel_3558	NA	NA
UHGV-2146191_22	Pfam	PF14359	NA	DUF4406
UHGV-2146191_22	COG	COG3613	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-2146191_22	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-2146191_23	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2146191_23	UniRef90	UniRef90_UPI001C10AB33	NA	NA
UHGV-2146191_23	eggNOG-mapper	428125.CLOLEP_01806	NA	NA
UHGV-2146191_23	Pfam	PF07374	NA	DUF1492
UHGV-2146191_23	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-2146191_24	Structural annotation	PF10922, MF_00839	NA	NA
UHGV-2146191_25	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2146191_25	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-2146191_25	UniRef90	UniRef90_A0A416S378	PBSX family phage terminase large subunit	NA
UHGV-2146191_25	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-2146191_25	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-2146191_25	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-2146191_25	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-2146191_25	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2146191_25	COG	COG1783	Phage terminase large subunit	NA
UHGV-2146191_25	Structural annotation	PF04466, PF17288, PF03592, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2146191_26	PHROG	phrog_1233	NA	unknown function
UHGV-2146191_26	eggNOG-mapper	1415774.U728_832	NA	NA
UHGV-2146191_26	Structural annotation	PF13058	NA	NA
UHGV-2146191_27	PHROG	phrog_533	portal protein	head and packaging
UHGV-2146191_27	UniRef90	UniRef90_A0A173TY48	Phage portal protein, putative, A118 family	NA
UHGV-2146191_27	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-2146191_27	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2146191_28	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2146191_28	UniRef90	UniRef90_A0A3D4T830	Phage capsid protein	NA
UHGV-2146191_28	eggNOG-mapper	476272.RUMHYD_01761	Phage minor capsid protein 2	NA
UHGV-2146191_28	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2146191_28	COG	COG2369	NA	NA
UHGV-2146191_28	Structural annotation	PF06152	NA	NA
UHGV-2146191_29	PHROG	phrog_15041	NA	unknown function
UHGV-2146191_30	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-2146191_30	UniRef90	UniRef90_UPI001C0EBA51	phage scaffolding protein	NA
UHGV-2146191_30	eggNOG-mapper	1539298.JO41_08210	Phage minor structural protein GP20	NA
UHGV-2146191_30	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-2146191_30	Structural annotation	PF06810	NA	NA
UHGV-2146191_31	PHROG	phrog_267	major head protein	head and packaging
UHGV-2146191_31	eggNOG-mapper	1235799.C818_04223	NA	NA
UHGV-2146191_31	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-2146191_32	PHROG	phrog_541	head-tail adaptor	connector
UHGV-2146191_32	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-2146191_33	PHROG	phrog_3366	NA	unknown function
UHGV-2146191_33	Structural annotation	PF20536, COG5614	NA	NA
UHGV-2146191_34	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2146191_34	UniRef90	UniRef90_A0A1H7MNM8	Minor capsid protein	NA
UHGV-2146191_34	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-2146191_34	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-2146191_34	Structural annotation	PF11114	NA	NA
UHGV-2146191_35	PHROG	phrog_3266	tail completion	connector
UHGV-2146191_35	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-2146191_35	Structural annotation	PF12691	NA	NA
UHGV-2146191_36	PHROG	phrog_3099	NA	unknown function
UHGV-2146191_36	eggNOG-mapper	693746.OBV_18150	NA	NA
UHGV-2146191_36	Structural annotation	PF10772, TIGR02126, COG3499	NA	NA
UHGV-2146191_37	PHROG	phrog_11299	NA	unknown function
UHGV-2146191_37	eggNOG-mapper	1449050.JNLE01000003_gene3883	NA	NA
UHGV-2146191_37	Structural annotation	PF10666	NA	NA
UHGV-2146191_38	PHROG	phrog_706	NA	unknown function
UHGV-2146191_38	UniRef90	UniRef90_UPI00164D7633	Gp15 family bacteriophage protein	NA
UHGV-2146191_38	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-2146191_38	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-2146191_38	Structural annotation	PF06854	NA	NA
UHGV-2146191_39	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-2146191_39	UniRef90	UniRef90_A0A810PX76	Phage tail tape measure protein	NA
UHGV-2146191_39	eggNOG-mapper	1449050.JNLE01000003_gene3881	domain protein	NA
UHGV-2146191_39	COG	COG1511	NA	NA
UHGV-2146191_40	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-2146191_41	PHROG	phrog_6616	tail protein	tail
UHGV-2146191_41	UniRef90	UniRef90_A0A3D1VAY1	Prophage_tail domain-containing protein	NA
UHGV-2146191_41	Structural annotation	PF13550, PF09931, NF033848, COG3500	NA	NA
UHGV-2146191_42	Structural annotation	PF20622, NF032891	NA	NA
UHGV-2146191_43	eggNOG-mapper	411471.SUBVAR_06929	ATPase involved in DNA repair	NA
UHGV-2146191_43	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-2146191_44	KOfam	K20846	cgkA; kappa-carrageenase [EC:3.2.1.83]	NA
UHGV-2146191_44	PHROG	phrog_215	structural protein with Ig domain	head and packaging
UHGV-2146191_44	eggNOG-mapper	203275.BFO_0575	Bacterial group 2 Ig-like protein	NA
UHGV-2146191_44	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-2146191_44	COG	COG5492	NA	NA
UHGV-2146191_44	Structural annotation	PF02368, PF09423, MF_00575, NF003743, NF005261, COG5492	NA	NA
UHGV-2146191_45	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2146191_45	PHROG	phrog_5182	endolysin	lysis
UHGV-2146191_45	UniRef90	UniRef90_R5AZE6	N-acetylmuramoyl-L-alanine amidase family 2	NA
UHGV-2146191_45	eggNOG-mapper	658655.HMPREF0988_00523	Ami_2	NA
UHGV-2146191_45	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-2146191_45	Pfam	PF00395	S-layer homology domain	SLH
UHGV-2146191_45	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2146191_45	Structural annotation	PF01510, MF_04111, COG5632	NA	NA
UHGV-2146191_46	PHROG	phrog_199	holin	lysis
UHGV-2146191_46	UniRef90	UniRef90_R5AT18	Toxin secretion/phage lysis holin	NA
UHGV-2146191_46	eggNOG-mapper	1121344.JHZO01000003_gene684	toxin secretion phage lysis holin	NA
UHGV-2146191_46	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-2146191_46	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-2146191_46	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-2146191_46	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-2146191_47	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-2146191_47	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-2146191_47	UniRef90	UniRef90_UPI0005D18D19	type II toxin-antitoxin system HicA family toxin	NA
UHGV-2146191_47	eggNOG-mapper	641112.ACOK01000116_gene2618	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-2146191_47	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-2146191_47	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-2146191_47	Structural annotation	PF07927, COG1724	NA	NA
UHGV-2146191_48	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-2146191_48	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-2146191_48	UniRef90	UniRef90_A0A564UIL3	HicB-like domain-containing protein	NA
UHGV-2146191_48	eggNOG-mapper	641112.ACOK01000116_gene2617	HicB_like antitoxin of bacterial toxin-antitoxin system	NA
UHGV-2146191_48	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-2146191_48	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-2146191_48	Structural annotation	PF15919, COG1598	NA	NA