UHGV-2147305

Genome information

Genome length 31,699 bps

CDS count 49

Completeness 85.21% (medium-quality)

geNomad score 0.9797

Prediction confidence Confident

Genome information
Genome ID	UHGV-2147305
vOTU ID	vOTU-027169
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029724\|Ga0245182_100358\|provirus_33148_64846
BioSample	NA
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	85.21% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9797
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.45
Jumbo phage	No

Genome content
Genome length	31,699 bps
GC content	48.10%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	94.05%
Average CDS length	613.71 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2147305_1	KOfam	K14059	int; integrase	NA
UHGV-2147305_1	PHROG	phrog_1	integrase	integration and excision
UHGV-2147305_1	UniRef90	UniRef90_UPI0018989279	site-specific integrase	NA
UHGV-2147305_1	eggNOG-mapper	936580.HMPREF1516_0752	DNA integration	NA
UHGV-2147305_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2147305_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2147305_1	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-2147305_2	PHROG	phrog_4980	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UHGV-2147305_2	UniRef90	UniRef90_R7HFV1	Surface lipoprotein-related family protein	NA
UHGV-2147305_2	eggNOG-mapper	742818.HMPREF9451_01281	Host cell surface-exposed lipoprotein	NA
UHGV-2147305_2	Pfam	PF10400	Virulence activator alpha C-term	Vir_act_alpha_C
UHGV-2147305_2	Pfam	PF07553	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
UHGV-2147305_2	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-2147305_2	Structural annotation	PF02631, MF_01114, NF001062, COG2137	NA	NA
UHGV-2147305_3	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-2147305_3	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-2147305_3	UniRef90	UniRef90_A0A3A6ECX9	Helix-turn-helix domain-containing protein	NA
UHGV-2147305_3	eggNOG-mapper	665956.HMPREF1032_01654	Peptidase S24-like	NA
UHGV-2147305_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2147305_3	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-2147305_3	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2147305_3	Structural annotation	PF00717, PF01381, MF_00015, NF041951, NF007621, COG2932	NA	NA
UHGV-2147305_4	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2147305_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2147305_4	UniRef90	UniRef90_A0A3A6E2Y2	XRE family transcriptional regulator	NA
UHGV-2147305_4	eggNOG-mapper	1235792.C808_03097	Helix-turn-helix XRE-family like proteins	NA
UHGV-2147305_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2147305_4	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-2147305_7	AcrCatalog	cluster_35670	NA	NA
UHGV-2147305_7	Structural annotation	NF042413	NA	NA
UHGV-2147305_8	PHROG	phrog_1123	NA	unknown function
UHGV-2147305_8	Structural annotation	PF02002, MF_01804, NF040939, COG3355	NA	NA
UHGV-2147305_10	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-2147305_10	UniRef90	UniRef90_A0A8D9UGW3	DNA repair protein RAD52-like protein	NA
UHGV-2147305_10	eggNOG-mapper	742767.HMPREF9456_02052	NA	NA
UHGV-2147305_10	Structural annotation	PF04098, TIGR00607, COG4380	NA	NA
UHGV-2147305_11	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-2147305_11	UniRef90	UniRef90_UPI001F3F3E5C	recombination protein NinB	NA
UHGV-2147305_11	eggNOG-mapper	1304866.K413DRAFT_1197	NA	NA
UHGV-2147305_12	PHROG	phrog_7566	NA	unknown function
UHGV-2147305_12	UniRef90	UniRef90_A0A8D9UHC0	Recombination enhancement function protein nuclease	NA
UHGV-2147305_12	eggNOG-mapper	693746.OBV_25470	NA	NA
UHGV-2147305_14	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-2147305_14	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2147305_14	UniRef90	UniRef90_A0A0W7TNC8	Single-stranded DNA-binding protein	NA
UHGV-2147305_14	eggNOG-mapper	665956.HMPREF1032_00430	Single-stranded DNA-binding protein	NA
UHGV-2147305_14	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2147305_14	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-2147305_14	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2147305_14	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-2147305_14	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-2147305_15	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-2147305_15	eggNOG-mapper	665956.HMPREF1032_02617	Phage replisome organizer, N-terminal domain protein	NA
UHGV-2147305_15	COG	COG3935	DNA replication protein DnaD	NA
UHGV-2147305_15	Structural annotation	PF10771, MF_01177, TIGR01714, COG5529	NA	NA
UHGV-2147305_16	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-2147305_16	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-2147305_16	UniRef90	UniRef90_A0A0W7TNB4	DNA helicase	NA
UHGV-2147305_16	eggNOG-mapper	665956.HMPREF1032_02618	Participates in initiation and elongation during chromosome replication	NA
UHGV-2147305_16	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-2147305_16	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-2147305_16	COG	COG0305	Replicative DNA helicase	NA
UHGV-2147305_16	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-2147305_18	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2147305_18	eggNOG-mapper	33035.JPJF01000122_gene2460	NA	NA
UHGV-2147305_18	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-2147305_20	PHROG	phrog_757	DNA methyltransferase	other
UHGV-2147305_20	UniRef90	UniRef90_A0A372V4B7	DNA cytosine methyltransferase	NA
UHGV-2147305_20	eggNOG-mapper	485918.Cpin_3834	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-2147305_20	COG	COG0270	DNA-cytosine methylase	NA
UHGV-2147305_20	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-2147305_21	PHROG	phrog_1238	phosphoheptose isomerase	moron, auxiliary metabolic gene and host takeover
UHGV-2147305_21	UniRef90	UniRef90_R9LUT1	VRR-NUC domain-containing protein	NA
UHGV-2147305_21	eggNOG-mapper	665956.HMPREF1032_00133	phosphatase activity	NA
UHGV-2147305_21	COG	COG0561	Hydroxymethylpyrimidine pyrophosphatase and other HAD family phosphatases	NA
UHGV-2147305_27	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-2147305_27	UniRef90	UniRef90_A0A4U9RLZ8	NA	NA
UHGV-2147305_27	eggNOG-mapper	1519439.JPJG01000059_gene1914	NA	NA
UHGV-2147305_31	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2147305_31	Structural annotation	PF07374, TIGR01637	NA	NA
UHGV-2147305_32	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2147305_32	UniRef90	UniRef90_G9YSB5	HNH domain-containing protein	NA
UHGV-2147305_32	eggNOG-mapper	926561.KB900623_gene763	HNH nucleases	NA
UHGV-2147305_32	Pfam	PF01844	HNH endonuclease	HNH
UHGV-2147305_32	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2147305_33	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-2147305_33	UniRef90	UniRef90_UPI00195E8788	P27 family phage terminase small subunit	NA
UHGV-2147305_33	eggNOG-mapper	349161.Dred_2608	NA	NA
UHGV-2147305_33	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-2147305_34	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2147305_34	UniRef90	UniRef90_A0A1C6FFC9	Phage terminase-like protein, large subunit	NA
UHGV-2147305_34	eggNOG-mapper	1235792.C808_00083	Phage terminase-like protein large subunit	NA
UHGV-2147305_34	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2147305_34	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2147305_34	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-2147305_35	PHROG	phrog_12	portal protein	head and packaging
UHGV-2147305_35	UniRef90	UniRef90_A0A328UFT7	Phage portal protein	NA
UHGV-2147305_35	eggNOG-mapper	349161.Dred_2606	Phage portal protein, HK97 family	NA
UHGV-2147305_35	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2147305_35	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-2147305_35	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2147305_35	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-2147305_36	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-2147305_36	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-2147305_36	UniRef90	UniRef90_A0A1C6FFN6	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-2147305_36	eggNOG-mapper	349161.Dred_2605	Belongs to the peptidase S14 family	NA
UHGV-2147305_36	Pfam	PF00574	Clp protease	CLP_protease
UHGV-2147305_36	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-2147305_36	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-2147305_37	PHROG	phrog_10	major head protein	head and packaging
UHGV-2147305_37	UniRef90	UniRef90_G9YSC0	Cadherin-like domain-containing protein	NA
UHGV-2147305_37	eggNOG-mapper	1235792.C808_00086	Phage capsid family	NA
UHGV-2147305_37	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2147305_37	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-2147305_37	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2147305_37	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2147305_37	Structural annotation	PF05065, PF12733, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2147305_38	PHROG	phrog_749	NA	unknown function
UHGV-2147305_38	eggNOG-mapper	349161.Dred_2603	NA	NA
UHGV-2147305_39	PHROG	phrog_19734	NA	unknown function
UHGV-2147305_39	UniRef90	UniRef90_A0A6I7GNS7	Phage head closure protein	NA
UHGV-2147305_39	eggNOG-mapper	349161.Dred_2602	NA	NA
UHGV-2147305_39	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2147305_40	eggNOG-mapper	1235798.C817_04588	NA	NA
UHGV-2147305_40	Structural annotation	PF05657, COG3167	NA	NA
UHGV-2147305_41	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2147305_41	UniRef90	UniRef90_A0A1C6FG30	Phage protein, HK97 gp10 family	NA
UHGV-2147305_41	eggNOG-mapper	1235798.C817_04589	NA	NA
UHGV-2147305_41	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-2147305_41	Structural annotation	TIGR01725	NA	NA
UHGV-2147305_42	PHROG	phrog_88	major tail protein	tail
UHGV-2147305_42	UniRef90	UniRef90_G9YSC5	Phage major tail protein, phi13 family	NA
UHGV-2147305_42	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-2147305_42	COG	COG5492	NA	NA
UHGV-2147305_42	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-2147305_44	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-2147305_44	UniRef90	UniRef90_A0A1Y4R6K5	PhageMin_Tail domain-containing protein	NA
UHGV-2147305_44	eggNOG-mapper	1224164.B843_03450	Tail protein	NA
UHGV-2147305_44	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-2147305_44	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-2147305_44	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-2147305_44	Structural annotation	PF20155, COG5280	NA	NA
UHGV-2147305_45	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-2147305_45	UniRef90	UniRef90_A0A1C6H6D2	Phage-related protein	NA
UHGV-2147305_45	eggNOG-mapper	1032362.F6K8S1_9CAUD	Phage tail protein	NA
UHGV-2147305_45	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-2147305_46	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-2147305_46	UniRef90	UniRef90_UPI001968120D	phage tail protein	NA
UHGV-2147305_46	eggNOG-mapper	1123263.AUKY01000068_gene489	Phage minor structural protein	NA
UHGV-2147305_46	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-2147305_46	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-2147305_46	COG	COG4926	Phage-related protein	NA
UHGV-2147305_46	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-2147305_47	PHROG	phrog_4492	tail fiber protein	tail
UHGV-2147305_47	UniRef90	UniRef90_A0A0D8IYB2	BppU_N domain-containing protein	NA
UHGV-2147305_47	eggNOG-mapper	1160721.RBI_I01572	NA	NA
UHGV-2147305_47	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-2147305_47	Structural annotation	PF10651, PF04721, NF038186	NA	NA
UHGV-2147305_48	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-2147305_48	PHROG	phrog_7767	metallo-endopeptidase	other
UHGV-2147305_48	UniRef90	UniRef90_A0A0D8J327	Peptidase_M23 domain-containing protein	NA
UHGV-2147305_48	eggNOG-mapper	665956.HMPREF1032_00102	heme binding	NA
UHGV-2147305_48	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-2147305_48	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-2147305_48	Structural annotation	PF01551, NF040883, COG0739	NA	NA
UHGV-2147305_49	eggNOG-mapper	665956.HMPREF1032_02709	NA	NA