UHGV-2147376

Genome information

Genome length 39,351 bps

CDS count 53

Completeness 72.00% (medium-quality)

geNomad score 0.9519

Prediction confidence Confident

Genome information
Genome ID	UHGV-2147376
vOTU ID	vOTU-015193
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029719\|Ga0245179_1000041\|provirus_130690_181558
BioSample	SAMEA3449231
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	72.00% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	16
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9519
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	48.66
Jumbo phage	No

Genome content
Genome length	39,351 bps
GC content	39.84%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	89.01%
Average CDS length	663.23 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2147376_1	UniRef90	UniRef90_A0A374DFH6	ATP-dependent helicase Rep	NA
UHGV-2147376_1	eggNOG-mapper	742738.HMPREF9460_03543	NA	NA
UHGV-2147376_1	Pfam	PF02407	Putative viral replication protein	Viral_Rep
UHGV-2147376_1	Pfam	PF00910	RNA helicase	RNA_helicase
UHGV-2147376_1	Structural annotation	PF02407, PF00519, MF_04000, TIGR01650, COG0606	NA	NA
UHGV-2147376_2	Structural annotation	PF06125, COG3390	NA	NA
UHGV-2147376_4	KOfam	K01154	hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]	NA
UHGV-2147376_4	PHROG	phrog_2668	NA	unknown function
UHGV-2147376_4	UniRef90	UniRef90_A0A2N0USH9	Type I restriction modification DNA specificity domain protein	NA
UHGV-2147376_4	eggNOG-mapper	97138.C820_00158	PFAM restriction modification system DNA specificity domain	NA
UHGV-2147376_4	PADLOC	Specificity_I_00134	Type I specificity subunit	RM
UHGV-2147376_4	Pfam	PF01420	Type I restriction modification DNA specificity domain	Methylase_S
UHGV-2147376_4	COG	COG0732	Restriction endonuclease S subunit	NA
UHGV-2147376_5	KOfam	K01153	hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]	NA
UHGV-2147376_5	PHROG	phrog_3830	NA	unknown function
UHGV-2147376_5	UniRef90	UniRef90_A0A3D3DB02	Type I restriction enzyme endonuclease subunit	NA
UHGV-2147376_5	eggNOG-mapper	536227.CcarbDRAFT_2694	Subunit R is required for both nuclease and ATPase activities, but not for modification	NA
UHGV-2147376_5	PADLOC	REase_I_00009	Type I restriction enzyme	RM
UHGV-2147376_5	Pfam	PF12008	Type I restriction and modification enzyme - subunit R C terminal	EcoR124_C
UHGV-2147376_5	COG	COG0610	Type I site-specific restriction-modification system, R (restriction) subunit and related helicases ...	NA
UHGV-2147376_6	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-2147376_6	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-2147376_6	UniRef90	UniRef90_A0A1C6GZH6	LexA repressor	NA
UHGV-2147376_6	eggNOG-mapper	1160721.RBI_II00559	Peptidase S24-like	NA
UHGV-2147376_6	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-2147376_6	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-2147376_6	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-2147376_6	Structural annotation	PF00717, PF12844, MF_00015, NF007621, NF041951, COG2932	NA	NA
UHGV-2147376_7	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-2147376_7	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2147376_7	UniRef90	UniRef90_A0A1C6GZN2	Anaerobic benzoate catabolism transcriptional regulator	NA
UHGV-2147376_7	eggNOG-mapper	431943.CKL_1947	sequence-specific DNA binding	NA
UHGV-2147376_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2147376_7	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2147376_7	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-2147376_10	PHROG	phrog_310	transposase	integration and excision
UHGV-2147376_10	UniRef90	UniRef90_A0A413QHZ6	MerR family transcriptional regulator	NA
UHGV-2147376_10	eggNOG-mapper	445972.ANACOL_00518	Mu transposase, C-terminal	NA
UHGV-2147376_10	PADLOC	TnsB_0_V-K	TnsB_0_V-K	CRISPR-CAS
UHGV-2147376_10	Pfam	PF09039	Mu DNA binding, I gamma subdomain	HTH_Tnp_Mu_2
UHGV-2147376_10	Pfam	PF09299	Mu transposase, C-terminal	Mu-transpos_C
UHGV-2147376_10	COG	COG2801	Transposase InsO and inactivated derivatives	NA
UHGV-2147376_10	Structural annotation	PF02914, PF09039, PF09299, PF21531, NF033594, TIGR01764, COG3316, COG3311	NA	NA
UHGV-2147376_11	KOfam	K07132	MuB; ATP-dependent target DNA activator	NA
UHGV-2147376_11	PHROG	phrog_296	DNA transposition protein	integration and excision
UHGV-2147376_11	UniRef90	UniRef90_A0A413QHD1	AAA domain-containing protein	NA
UHGV-2147376_11	eggNOG-mapper	1160721.RBI_II00554	AAA domain	NA
UHGV-2147376_11	Pfam	PF13401	AAA domain	AAA_22
UHGV-2147376_11	COG	COG2842	Bacteriophage DNA transposition protein, AAA+ family ATPase	NA
UHGV-2147376_11	Structural annotation	PF13401, MF_01407, TIGR03015, COG2842	NA	NA
UHGV-2147376_13	PHROG	phrog_5671	NA	unknown function
UHGV-2147376_13	eggNOG-mapper	411473.RUMCAL_01912	NA	NA
UHGV-2147376_15	KOfam	K06284	abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes	NA
UHGV-2147376_15	PHROG	phrog_4681	antitoxin from a toxin-antitoxin system	moron, auxiliary metabolic gene and host takeover
UHGV-2147376_15	UniRef90	UniRef90_A0A413QH66	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA
UHGV-2147376_15	eggNOG-mapper	742733.HMPREF9469_02890	toxin-antitoxin pair type II binding	NA
UHGV-2147376_15	NCBIFam	TIGR01439.1	transcriptional regulator, AbrB family	NA
UHGV-2147376_15	COG	COG2002	Bifunctional DNA-binding transcriptional regulator of stationary/sporulation/toxin gene expression and antitoxin component of the YhaV-PrlF toxin-antitoxin module	NA
UHGV-2147376_15	Structural annotation	PF15937, TIGR01439, NF004424, COG2002	NA	NA
UHGV-2147376_16	eggNOG-mapper	645991.Sgly_0760	NA	NA
UHGV-2147376_17	PHROG	phrog_286	NA	unknown function
UHGV-2147376_17	UniRef90	UniRef90_A0A373KYV3	NA	NA
UHGV-2147376_17	eggNOG-mapper	552398.HMPREF0866_03127	NA	NA
UHGV-2147376_17	Pfam	PF06252	Bacteriophage Mu, GemA protein	GemA
UHGV-2147376_17	Structural annotation	PF06252	NA	NA
UHGV-2147376_18	PHROG	phrog_532	late transcriptional activator	transcription regulation
UHGV-2147376_18	UniRef90	UniRef90_A0A373L0N7	Mor domain-containing protein	NA
UHGV-2147376_18	eggNOG-mapper	411483.FAEPRAA2165_03398	Mor transcription activator family	NA
UHGV-2147376_18	Pfam	PF08765	Mor transcription activator family	Mor
UHGV-2147376_18	COG	COG5566	Transcriptional regulator, middle operon regulator (Mor) family	NA
UHGV-2147376_18	Structural annotation	PF08765, NF040785, COG5566	NA	NA
UHGV-2147376_19	eggNOG-mapper	663278.Ethha_0085	NA	NA
UHGV-2147376_20	PHROG	phrog_25462	NA	unknown function
UHGV-2147376_20	UniRef90	UniRef90_A0A413QHC4	Type VI secretion protein	NA
UHGV-2147376_20	eggNOG-mapper	1160721.RBI_II00547	NA	NA
UHGV-2147376_20	Structural annotation	PF01638, MF_01819, NF002926, COG1733	NA	NA
UHGV-2147376_21	PHROG	phrog_426	terminase small subunit	head and packaging
UHGV-2147376_21	UniRef90	UniRef90_A0A373L007	NA	NA
UHGV-2147376_21	eggNOG-mapper	411902.CLOBOL_06314	NA	NA
UHGV-2147376_21	Pfam	PF11985	Bacteriophage Mu, Gp27	Phage_Mu_Gp27
UHGV-2147376_21	Structural annotation	PF11985	NA	NA
UHGV-2147376_22	KOfam	K02601	nusG; transcription termination/antitermination protein NusG	NA
UHGV-2147376_22	PHROG	phrog_6386	transcription antiterminator	transcription regulation
UHGV-2147376_22	UniRef90	UniRef90_A0A413QHD3	NGN domain-containing protein	NA
UHGV-2147376_22	eggNOG-mapper	1304880.JAGB01000001_gene953	antitermination protein NusG	NA
UHGV-2147376_22	Pfam	PF02357	Transcription termination factor nusG	NusG
UHGV-2147376_22	COG	COG0250	Transcription termination/antitermination protein NusG	NA
UHGV-2147376_22	Structural annotation	PF02357, MF_00951, NF033641, COG0250	NA	NA
UHGV-2147376_24	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2147376_24	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-2147376_24	UniRef90	UniRef90_A0A373L0G3	PBSX family phage terminase large subunit	NA
UHGV-2147376_24	eggNOG-mapper	1105031.HMPREF1141_0088	phage terminase, large subunit, PBSX family	NA
UHGV-2147376_24	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-2147376_24	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2147376_24	COG	COG1783	Phage terminase large subunit	NA
UHGV-2147376_24	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-2147376_25	PHROG	phrog_533	portal protein	head and packaging
UHGV-2147376_25	UniRef90	UniRef90_A0A3D0XCF1	Phage capsid protein	NA
UHGV-2147376_25	eggNOG-mapper	411490.ANACAC_00782	NA	NA
UHGV-2147376_25	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2147376_25	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2147376_26	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2147376_26	UniRef90	UniRef90_A0A1C6I5M7	Phage minor capsid protein 2	NA
UHGV-2147376_26	eggNOG-mapper	641112.ACOK01000073_gene2890	NA	NA
UHGV-2147376_26	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2147376_26	COG	COG2369	NA	NA
UHGV-2147376_26	Structural annotation	PF06152	NA	NA
UHGV-2147376_28	PHROG	phrog_419	NA	unknown function
UHGV-2147376_28	UniRef90	UniRef90_UPI001E40EA70	PGDYG domain-containing protein	NA
UHGV-2147376_28	eggNOG-mapper	203119.Cthe_2457	NA	NA
UHGV-2147376_28	Pfam	PF14083	PGDYG protein	PGDYG
UHGV-2147376_29	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-2147376_29	UniRef90	UniRef90_UPI001967FAB3	phage scaffolding protein	NA
UHGV-2147376_29	eggNOG-mapper	1401067.HMPREF0872_00300	Phage minor structural protein GP20	NA
UHGV-2147376_29	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-2147376_29	Structural annotation	PF06810	NA	NA
UHGV-2147376_30	PHROG	phrog_212	major head protein	head and packaging
UHGV-2147376_30	UniRef90	UniRef90_A0A373KYA5	Phage capsid protein	NA
UHGV-2147376_30	eggNOG-mapper	935836.JAEL01000021_gene1494	NA	NA
UHGV-2147376_30	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-2147376_31	PHROG	phrog_541	head-tail adaptor	connector
UHGV-2147376_31	eggNOG-mapper	658655.HMPREF0988_02559	NA	NA
UHGV-2147376_32	PHROG	phrog_3366	NA	unknown function
UHGV-2147376_32	eggNOG-mapper	545697.HMPREF0216_02852	NA	NA
UHGV-2147376_32	Pfam	PF20536	NA	DUF6751
UHGV-2147376_32	Structural annotation	PF20536, TIGR01563, COG1853	NA	NA
UHGV-2147376_33	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2147376_33	UniRef90	UniRef90_A0A413QH49	Capsid protein	NA
UHGV-2147376_33	eggNOG-mapper	883114.HMPREF9709_01190	Minor capsid protein	NA
UHGV-2147376_33	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-2147376_33	Structural annotation	PF11114	NA	NA
UHGV-2147376_34	PHROG	phrog_3266	tail completion	connector
UHGV-2147376_34	UniRef90	UniRef90_A0A373KYC6	Chloramphenicol resistance protein	NA
UHGV-2147376_34	eggNOG-mapper	641112.ACOK01000073_gene2899	NA	NA
UHGV-2147376_34	Structural annotation	PF12691	NA	NA
UHGV-2147376_35	PHROG	phrog_3099	NA	unknown function
UHGV-2147376_35	UniRef90	UniRef90_A0A3P6KYP0	Phage capsid family protein	NA
UHGV-2147376_35	eggNOG-mapper	411490.ANACAC_00772	NA	NA
UHGV-2147376_35	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2147376_36	PHROG	phrog_4450	NA	unknown function
UHGV-2147376_36	UniRef90	UniRef90_A0A373KZ30	AP endonuclease	NA
UHGV-2147376_36	eggNOG-mapper	931276.Cspa_c07520	NA	NA
UHGV-2147376_36	Pfam	PF20378	NA	DUF6673
UHGV-2147376_36	Structural annotation	PF20378	NA	NA
UHGV-2147376_37	PHROG	phrog_706	NA	unknown function
UHGV-2147376_37	UniRef90	UniRef90_A0A1G4WU45	Bacteriophage Gp15 protein	NA
UHGV-2147376_37	eggNOG-mapper	1499683.CCFF01000017_gene2567	Bacteriophage Gp15 protein	NA
UHGV-2147376_37	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-2147376_37	Structural annotation	PF06854	NA	NA
UHGV-2147376_38	PHROG	phrog_37750	NA	unknown function
UHGV-2147376_38	UniRef90	UniRef90_A0A1G4WVI6	Beta-lactamase inhibitor (BLIP)	NA
UHGV-2147376_38	eggNOG-mapper	1280390.CBQR020000086_gene1875	NA	NA
UHGV-2147376_39	PHROG	phrog_19074	NA	unknown function
UHGV-2147376_39	UniRef90	UniRef90_A0A373L0L9	Phage tail tape measure protein	NA
UHGV-2147376_39	eggNOG-mapper	33035.JPJF01000033_gene2265	Phage-related minor tail protein	NA
UHGV-2147376_39	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-2147376_39	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-2147376_39	COG	COG5283	Phage-related tail protein	NA
UHGV-2147376_39	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-2147376_40	UniRef90	UniRef90_A0A1G4WVH7	Phage-related protein	NA
UHGV-2147376_40	eggNOG-mapper	1347392.CCEZ01000045_gene7	phage tail	NA
UHGV-2147376_40	COG	COG4722	Phage-related protein YomH	NA
UHGV-2147376_40	Structural annotation	PF20753, PF20195, TIGR01633, COG4722	NA	NA
UHGV-2147376_41	PHROG	phrog_18110	NA	unknown function
UHGV-2147376_41	UniRef90	UniRef90_A0A373KYA3	Prophage_tail domain-containing protein	NA
UHGV-2147376_41	eggNOG-mapper	1280689.AUJC01000007_gene3306	Phage minor structural protein	NA
UHGV-2147376_41	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-2147376_41	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-2147376_41	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-2147376_41	Structural annotation	PF06605, PF18994, TIGR01665, COG4926	NA	NA
UHGV-2147376_43	PHROG	phrog_11105	NA	unknown function
UHGV-2147376_44	UniRef90	UniRef90_A0A1C6HHE5	BppU_N domain-containing protein	NA
UHGV-2147376_44	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-2147376_44	Structural annotation	PF10651, PF08931, TIGR02268	NA	NA
UHGV-2147376_46	eggNOG-mapper	642492.Clole_0840	NA	NA
UHGV-2147376_46	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-2147376_47	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2147376_47	PHROG	phrog_435	endolysin	lysis
UHGV-2147376_47	UniRef90	UniRef90_A0A413QH71	MurNAc-LAA domain-containing protein	NA
UHGV-2147376_47	eggNOG-mapper	1540257.JQMW01000004_gene402	n-acetylmuramoyl-l-alanine amidase	NA
UHGV-2147376_47	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-2147376_47	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2147376_48	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-2147376_48	PHROG	phrog_56	DNA methyltransferase	other
UHGV-2147376_48	UniRef90	UniRef90_A0A1C6HHY1	Site-specific DNA-methyltransferase (adenine-specific)	NA
UHGV-2147376_48	eggNOG-mapper	411902.CLOBOL_03426	COG COG0338 Site-specific DNA methylase	NA
UHGV-2147376_48	PADLOC	MTase_II_00033	Type II methyltransferase	RM
UHGV-2147376_48	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-2147376_48	NCBIFam	TIGR00571.1	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA
UHGV-2147376_48	COG	COG0338	DNA-adenine methylase	NA
UHGV-2147376_49	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-2147376_49	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-2147376_49	UniRef90	UniRef90_A0A413QHG2	XRE family transcriptional regulator	NA
UHGV-2147376_49	eggNOG-mapper	411471.SUBVAR_07446	helix-turn-helix	NA
UHGV-2147376_49	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-2147376_49	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-2147376_49	Structural annotation	PF13443, NF041951, COG3655	NA	NA
UHGV-2147376_50	UniRef90	UniRef90_R5E0Z7	Putative viral replication protein	NA
UHGV-2147376_50	eggNOG-mapper	742738.HMPREF9460_03543	NA	NA
UHGV-2147376_50	Pfam	PF02407	Putative viral replication protein	Viral_Rep
UHGV-2147376_51	Pfam	PF13306	BspA type Leucine rich repeat region (6 copies)	LRR_5
UHGV-2147376_51	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-2147376_52	KOfam	K01990	ABC-2.A; ABC-2 type transport system ATP-binding protein	NA
UHGV-2147376_52	PHROG	phrog_293	ABC transporter	moron, auxiliary metabolic gene and host takeover
UHGV-2147376_52	UniRef90	UniRef90_A0A2N0US73	Putative ABC transporter ATP-binding protein YxlF	NA
UHGV-2147376_52	eggNOG-mapper	1235799.C818_01939	ATPases associated with a variety of cellular activities	NA
UHGV-2147376_52	Pfam	PF00005	ABC transporter	ABC_tran
UHGV-2147376_52	COG	COG1131	ABC-type multidrug transport system, ATPase component	NA
UHGV-2147376_52	Structural annotation	PF00005, MF_01005, TIGR03740, COG1131	NA	NA
UHGV-2147376_53	UniRef90	UniRef90_UPI001C24E2A2	NA	NA
UHGV-2147376_53	Pfam	PF10920	NA	DUF2705