UHGV-2147766

Genome information

Genome length 36,866 bps

CDS count 48

Completeness 75.20% (medium-quality)

geNomad score 0.9372

Prediction confidence Confident

Genome information
Genome ID	UHGV-2147766
vOTU ID	vOTU-015362
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029783\|Ga0243236_1000025\|provirus_86332_123197
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	75.20% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	3
Recoded stop codon	No

Viral signal
geNomad score	0.9372
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.52
Jumbo phage	No

Genome content
Genome length	36,866 bps
GC content	40.16%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	48
CDS density	93.17%
Average CDS length	722.06 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2147766_1	PHROG	phrog_3846	NA	unknown function
UHGV-2147766_1	UniRef90	UniRef90_UPI0002692C30	MAE_28990/MAE_18760 family HEPN-like nuclease	NA
UHGV-2147766_1	eggNOG-mapper	357276.EL88_11585	NA	NA
UHGV-2147766_1	Pfam	PF18735	RiboL-PSP-HEPN	HEPN_RiboL-PSP
UHGV-2147766_1	Structural annotation	PF18735	NA	NA
UHGV-2147766_2	PHROG	phrog_2598	NA	unknown function
UHGV-2147766_2	UniRef90	UniRef90_UPI0002692C2F	NA	NA
UHGV-2147766_2	eggNOG-mapper	357276.EL88_11580	NA	NA
UHGV-2147766_2	Pfam	PF03235	NA	DUF262
UHGV-2147766_2	COG	COG1479	NA	NA
UHGV-2147766_2	Structural annotation	PF14072, TIGR04285, COG1479	NA	NA
UHGV-2147766_3	Pfam	PF08797	HIRAN domain	HIRAN
UHGV-2147766_4	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-2147766_4	UniRef90	UniRef90_A0A849XIW3	Helix-turn-helix transcriptional regulator	NA
UHGV-2147766_4	eggNOG-mapper	1349822.NSB1T_12435	NA	NA
UHGV-2147766_4	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-2147766_4	Structural annotation	PF00717, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-2147766_7	eggNOG-mapper	411476.BACOVA_03870	NA	NA
UHGV-2147766_7	Structural annotation	PF01475, MF_01909, NF041413, COG5045	NA	NA
UHGV-2147766_8	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-2147766_8	PHROG	phrog_116	DNA methyltransferase	other
UHGV-2147766_8	UniRef90	UniRef90_UPI001F45E8F7	DNA cytosine methyltransferase	NA
UHGV-2147766_8	eggNOG-mapper	679935.Alfi_1857	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-2147766_8	PADLOC	MTase_II_00164	Type II methyltransferase	RM
UHGV-2147766_8	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-2147766_8	COG	COG0270	DNA-cytosine methylase	NA
UHGV-2147766_8	Structural annotation	PF00145, MF_02100, TIGR00675, COG0270	NA	NA
UHGV-2147766_11	KOfam	K07684	narL; two-component system, NarL family, nitrate/nitrite response regulator NarL	NA
UHGV-2147766_11	UniRef90	UniRef90_A0A413IG35	LuxR family transcriptional regulator	NA
UHGV-2147766_11	eggNOG-mapper	766499.C357_22300	response regulator	NA
UHGV-2147766_11	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-2147766_11	COG	COG2197	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	NA
UHGV-2147766_11	Structural annotation	PF00196, COG2771	NA	NA
UHGV-2147766_12	PHROG	phrog_20437	DNA replication initiation	DNA, RNA and nucleotide metabolism
UHGV-2147766_12	UniRef90	UniRef90_A0A413IG34	NA	NA
UHGV-2147766_12	eggNOG-mapper	1291050.JAGE01000001_gene2901	NA	NA
UHGV-2147766_12	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-2147766_12	COG	COG3935	DNA replication protein DnaD	NA
UHGV-2147766_13	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-2147766_13	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-2147766_13	UniRef90	UniRef90_A0A413IG75	Replicative DNA helicase	NA
UHGV-2147766_13	eggNOG-mapper	1121097.JCM15093_402	Participates in initiation and elongation during chromosome replication	NA
UHGV-2147766_13	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-2147766_13	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-2147766_13	NCBIFam	TIGR00665.1	replicative DNA helicase	NA
UHGV-2147766_13	COG	COG0305	Replicative DNA helicase	NA
UHGV-2147766_13	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-2147766_16	PHROG	phrog_35807	NA	unknown function
UHGV-2147766_16	UniRef90	UniRef90_A0A413IGD2	RNA polymerase subunit sigma	NA
UHGV-2147766_16	eggNOG-mapper	357276.EL88_12625	RNA polymerase activity	NA
UHGV-2147766_16	COG	COG0085	DNA-directed RNA polymerase, beta subunit/140 kD subunit	NA
UHGV-2147766_16	Structural annotation	PF14902	NA	NA
UHGV-2147766_18	PHROG	phrog_2323	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2147766_18	UniRef90	UniRef90_A0A413IGE7	HNH endonuclease	NA
UHGV-2147766_18	eggNOG-mapper	891974.E05_32370	HNH nucleases	NA
UHGV-2147766_18	Pfam	PF01844	HNH endonuclease	HNH
UHGV-2147766_18	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2147766_19	Structural annotation	PF04703, MF_01819	NA	NA
UHGV-2147766_20	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-2147766_20	PHROG	phrog_1	integrase	integration and excision
UHGV-2147766_20	UniRef90	UniRef90_UPI000D0AF22A	tyrosine-type recombinase/integrase	NA
UHGV-2147766_20	eggNOG-mapper	673862.BABL1_818	Belongs to the 'phage' integrase family	NA
UHGV-2147766_20	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2147766_20	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-2147766_20	Structural annotation	PF00589, PF02899, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-2147766_22	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-2147766_22	UniRef90	UniRef90_A0A413IG44	Phage terminase small subunit P27 family	NA
UHGV-2147766_22	eggNOG-mapper	1433126.BN938_0084	Phage terminase, small subunit	NA
UHGV-2147766_22	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-2147766_22	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-2147766_22	COG	COG3747	Phage terminase, small subunit	NA
UHGV-2147766_22	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-2147766_23	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2147766_23	UniRef90	UniRef90_A0A413IG86	Terminase large subunit	NA
UHGV-2147766_23	eggNOG-mapper	2754.EH55_13175	Terminase	NA
UHGV-2147766_23	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2147766_23	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2147766_23	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2147766_23	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-2147766_26	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-2147766_26	PHROG	phrog_5817	anti-repressor Ant	transcription regulation
UHGV-2147766_26	UniRef90	UniRef90_A0A413IG53	Phage antirepressor protein	NA
UHGV-2147766_26	eggNOG-mapper	1094563.MCQ_01689	protein HI1422 of Haemophilus influenzae (P44193)	NA
UHGV-2147766_26	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-2147766_26	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-2147766_27	eggNOG-mapper	1408813.AYMG01000001_gene3474	NA	NA
UHGV-2147766_28	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-2147766_28	UniRef90	UniRef90_A0A413IG49	Type II toxin-antitoxin system HicA family toxin	NA
UHGV-2147766_28	eggNOG-mapper	483215.BACFIN_07130	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-2147766_28	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-2147766_28	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-2147766_28	Structural annotation	PF07927, COG1724	NA	NA
UHGV-2147766_29	UniRef90	UniRef90_A0A413IGF4	Type II toxin-antitoxin system HicB family antitoxin	NA
UHGV-2147766_29	eggNOG-mapper	411476.BACOVA_00556	PFAM Uncharacterised protein family UPF0150	NA
UHGV-2147766_29	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-2147766_29	Structural annotation	PF21748, NF041951, COG1598	NA	NA
UHGV-2147766_30	PHROG	phrog_12	portal protein	head and packaging
UHGV-2147766_30	UniRef90	UniRef90_A0A413IG58	Phage portal protein	NA
UHGV-2147766_30	eggNOG-mapper	1414720.CBYM010000005_gene1370	Phage portal protein, HK97 family	NA
UHGV-2147766_30	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2147766_30	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-2147766_30	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2147766_30	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-2147766_31	KOfam	K06904	NA	NA
UHGV-2147766_31	PHROG	phrog_617	major head protein	head and packaging
UHGV-2147766_31	UniRef90	UniRef90_A0A849XMW7	HK97 family phage prohead protease	NA
UHGV-2147766_31	eggNOG-mapper	570967.JMLV01000007_gene944	Caudovirus prohead serine protease	NA
UHGV-2147766_31	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-2147766_31	COG	COG3740	Phage head maturation protease	NA
UHGV-2147766_32	PHROG	phrog_617	major head protein	head and packaging
UHGV-2147766_32	UniRef90	UniRef90_A0A413IG54	Phage major capsid protein	NA
UHGV-2147766_32	eggNOG-mapper	547045.NEISICOT_01400	Phage capsid family	NA
UHGV-2147766_32	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2147766_32	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2147766_32	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2147766_32	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2147766_33	UniRef90	UniRef90_A0A413IG96	Helix-hairpin-helix domain-containing protein	NA
UHGV-2147766_33	Structural annotation	PF01281, PF14520	NA	NA
UHGV-2147766_34	PHROG	phrog_442	head-tail adaptor	connector
UHGV-2147766_34	UniRef90	UniRef90_A0A413IG51	Phage gp6-like head-tail connector protein	NA
UHGV-2147766_34	eggNOG-mapper	349102.Rsph17025_1079	NA	NA
UHGV-2147766_34	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-2147766_34	NCBIFam	TIGR02215.1	phage conserved hypothetical protein, phiE125 gp8 family	NA
UHGV-2147766_34	Structural annotation	PF05135, TIGR02215	NA	NA
UHGV-2147766_35	UniRef90	UniRef90_A0A849XL54	Head-tail adaptor protein	NA
UHGV-2147766_35	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2147766_38	PHROG	phrog_1407	major tail protein	tail
UHGV-2147766_38	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2147766_39	Structural annotation	PF19591	NA	NA
UHGV-2147766_41	PHROG	phrog_27166	tail length tape measure protein	tail
UHGV-2147766_41	UniRef90	UniRef90_A0A413IG66	Phage tail length tape measure family protein	NA
UHGV-2147766_41	eggNOG-mapper	1125863.JAFN01000001_gene3558	Prophage tail length tape measure protein	NA
UHGV-2147766_41	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-2147766_42	PHROG	phrog_38044	NA	unknown function
UHGV-2147766_42	UniRef90	UniRef90_UPI000D873A09	polymer-forming cytoskeletal protein	NA
UHGV-2147766_42	eggNOG-mapper	657309.BXY_05160	NA	NA
UHGV-2147766_45	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-2147766_46	PHROG	phrog_1501	NA	unknown function
UHGV-2147766_46	UniRef90	UniRef90_A0A413IG69	NA	NA
UHGV-2147766_46	eggNOG-mapper	1121097.JCM15093_2704	NA	NA
UHGV-2147766_46	Pfam	PF18925	NA	DUF5675
UHGV-2147766_46	Structural annotation	PF18925	NA	NA
UHGV-2147766_47	PHROG	phrog_14010	NA	unknown function
UHGV-2147766_47	eggNOG-mapper	449673.BACSTE_02147	NA	NA
UHGV-2147766_47	Pfam	PF20186	NA	DUF6549
UHGV-2147766_47	Structural annotation	PF20186	NA	NA
UHGV-2147766_48	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-2147766_48	PHROG	phrog_1	integrase	integration and excision
UHGV-2147766_48	UniRef90	UniRef90_UPI00189BA12F	phage integrase SAM-like domain-containing protein	NA
UHGV-2147766_48	eggNOG-mapper	908612.HMPREF9720_2094	Belongs to the 'phage' integrase family	NA
UHGV-2147766_48	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-2147766_48	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2147766_48	COG	COG0582	Integrase/recombinase, includes phage integrase	NA