UHGV-2148045

Genome information

Genome length 34,074 bps

CDS count 47

Completeness 63.73% (medium-quality)

geNomad score 0.9713

Prediction confidence Confident

Genome information
Genome ID	UHGV-2148045
vOTU ID	vOTU-021707
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029758\|Ga0242784_100556\|provirus_1_34074
BioSample	SAMN05545030
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	63.73% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9713
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	45.2
Jumbo phage	No

Genome content
Genome length	34,074 bps
GC content	52.79%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	90.38%
Average CDS length	661.28 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2148045_1	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-2148045_1	PHROG	phrog_5073	tail fiber protein	tail
UHGV-2148045_1	eggNOG-mapper	1408437.JNJN01000002_gene1389	NA	NA
UHGV-2148045_1	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-2148045_2	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-2148045_2	UniRef90	UniRef90_A0A1C6FHB3	Phage-related protein	NA
UHGV-2148045_2	eggNOG-mapper	1443125.Z962_05575	Prophage endopeptidase tail	NA
UHGV-2148045_2	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-2148045_2	COG	COG4926	Phage-related protein	NA
UHGV-2148045_2	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-2148045_3	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-2148045_3	UniRef90	UniRef90_A0A1H8CU45	Phage tail protein	NA
UHGV-2148045_3	eggNOG-mapper	1423775.BAMN01000011_gene592	phage tail	NA
UHGV-2148045_3	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-2148045_3	COG	COG4722	Phage-related protein YomH	NA
UHGV-2148045_3	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-2148045_4	PHROG	phrog_13339	tail length tape measure protein	tail
UHGV-2148045_4	UniRef90	UniRef90_UPI00195E0384	phage tail tape measure protein	NA
UHGV-2148045_4	eggNOG-mapper	1408437.JNJN01000030_gene1055	Phage-related minor tail protein	NA
UHGV-2148045_4	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-2148045_4	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-2148045_4	COG	COG5283	Phage-related tail protein	NA
UHGV-2148045_4	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-2148045_6	Structural annotation	PF11836, TIGR01674	NA	NA
UHGV-2148045_7	PHROG	phrog_88	major tail protein	tail
UHGV-2148045_7	UniRef90	UniRef90_R5IDR6	Phage major tail protein phi13 family	NA
UHGV-2148045_7	eggNOG-mapper	1195236.CTER_5106	phage major tail protein, phi13 family	NA
UHGV-2148045_7	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-2148045_7	COG	COG5492	NA	NA
UHGV-2148045_7	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-2148045_8	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2148045_8	UniRef90	UniRef90_R5IIS5	HK97 gp10 family phage protein	NA
UHGV-2148045_8	eggNOG-mapper	1203606.HMPREF1526_00974	NA	NA
UHGV-2148045_8	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-2148045_8	Structural annotation	TIGR01725	NA	NA
UHGV-2148045_9	UniRef90	UniRef90_A0A7X2TNN1	Phage tail protein	NA
UHGV-2148045_9	eggNOG-mapper	1203606.HMPREF1526_00975	NA	NA
UHGV-2148045_9	Structural annotation	PF05657	NA	NA
UHGV-2148045_10	PHROG	phrog_25	head closure Hc1	connector
UHGV-2148045_10	UniRef90	UniRef90_UPI00102FD6ED	head-tail adaptor protein	NA
UHGV-2148045_10	eggNOG-mapper	935948.KE386495_gene1331	Phage head-tail joining protein	NA
UHGV-2148045_10	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-2148045_10	COG	COG5614	Phage head-tail adaptor	NA
UHGV-2148045_10	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2148045_11	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-2148045_11	Structural annotation	TIGR01560	NA	NA
UHGV-2148045_12	PHROG	phrog_10	major head protein	head and packaging
UHGV-2148045_12	UniRef90	UniRef90_A0A3D1WLB8	Phage major capsid protein	NA
UHGV-2148045_12	eggNOG-mapper	235909.GK0531	Phage capsid family	NA
UHGV-2148045_12	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2148045_12	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2148045_12	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2148045_12	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2148045_13	PHROG	phrog_16951	NA	unknown function
UHGV-2148045_13	eggNOG-mapper	693746.OBV_18840	NA	NA
UHGV-2148045_14	PHROG	phrog_12	portal protein	head and packaging
UHGV-2148045_14	UniRef90	UniRef90_A0A3D1WJW7	Phage portal protein	NA
UHGV-2148045_14	eggNOG-mapper	649747.HMPREF0083_01012	Phage portal protein	NA
UHGV-2148045_14	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2148045_14	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-2148045_14	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2148045_14	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-2148045_15	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2148045_15	UniRef90	UniRef90_A0A2V2G2T2	Terminase large subunit	NA
UHGV-2148045_15	eggNOG-mapper	1295642.H839_15973	Phage Terminase	NA
UHGV-2148045_15	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2148045_15	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2148045_15	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2148045_15	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-2148045_16	PHROG	phrog_1066	NA	unknown function
UHGV-2148045_16	eggNOG-mapper	1123263.AUKY01000046_gene465	NA	NA
UHGV-2148045_16	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-2148045_17	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-2148045_17	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2148045_17	UniRef90	UniRef90_A0A7K4BXL7	HNH endonuclease	NA
UHGV-2148045_17	eggNOG-mapper	130478.Q9B0E5_9CAUD	HNH endonuclease	NA
UHGV-2148045_17	Pfam	PF01844	HNH endonuclease	HNH
UHGV-2148045_20	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-2148045_20	UniRef90	UniRef90_A0A417ACC5	XRE family transcriptional regulator	NA
UHGV-2148045_20	eggNOG-mapper	1232447.BAHW02000027_gene1846	Helix-turn-helix XRE-family like proteins	NA
UHGV-2148045_20	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2148045_20	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-2148045_21	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2148045_21	UniRef90	UniRef90_A0A4Z0XVP8	RNA polymerase sigma factor SigO	NA
UHGV-2148045_21	eggNOG-mapper	1410624.JNKK01000017_gene1964	sigma factor activity	NA
UHGV-2148045_21	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-2148045_21	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-2148045_21	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-2148045_25	eggNOG-mapper	742738.HMPREF9460_04055	NA	NA
UHGV-2148045_26	PHROG	phrog_1934	NA	unknown function
UHGV-2148045_26	eggNOG-mapper	397290.C810_01488	zinc-finger-containing domain	NA
UHGV-2148045_26	Pfam	PF11672	zinc-finger-containing domain	DUF3268
UHGV-2148045_29	UniRef90	UniRef90_UPI000829B5FE	helix-turn-helix transcriptional regulator	NA
UHGV-2148045_29	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2148045_29	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2148045_29	Structural annotation	PF01381, NF007257, COG3655	NA	NA
UHGV-2148045_31	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-2148045_31	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2148045_31	UniRef90	UniRef90_A0A3A9EL48	DNA methylase N-4	NA
UHGV-2148045_31	eggNOG-mapper	1121334.KB911073_gene1851	DEAD-like helicases superfamily	NA
UHGV-2148045_31	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-2148045_31	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-2148045_31	Structural annotation	PF01555, PF16203, PF04851, MF_01821, MF_00472, NF041790, NF008572, COG0553, COG0863	NA	NA
UHGV-2148045_32	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-2148045_32	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2148045_32	UniRef90	UniRef90_A0A3D0M1J0	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-2148045_32	eggNOG-mapper	545697.HMPREF0216_02819	Endodeoxyribonuclease RusA	NA
UHGV-2148045_32	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-2148045_32	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-2148045_32	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-2148045_35	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-2148045_35	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-2148045_35	UniRef90	UniRef90_A0A1Y4EVJ1	DNA helicase	NA
UHGV-2148045_35	eggNOG-mapper	411471.SUBVAR_05838	Participates in initiation and elongation during chromosome replication	NA
UHGV-2148045_35	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-2148045_35	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-2148045_35	COG	COG0305	Replicative DNA helicase	NA
UHGV-2148045_35	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-2148045_36	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-2148045_36	eggNOG-mapper	665956.HMPREF1032_02617	Phage replisome organizer, N-terminal domain protein	NA
UHGV-2148045_36	COG	COG3935	DNA replication protein DnaD	NA
UHGV-2148045_36	Structural annotation	PF10771, MF_01177, TIGR01714, COG5529	NA	NA
UHGV-2148045_37	Structural annotation	PF21715	NA	NA
UHGV-2148045_38	PHROG	phrog_398	NA	unknown function
UHGV-2148045_38	UniRef90	UniRef90_UPI00137A6F13	putative HNHc nuclease	NA
UHGV-2148045_38	eggNOG-mapper	1485543.JMME01000021_gene802	Putative HNHc nuclease	NA
UHGV-2148045_38	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-2148045_38	Structural annotation	PF16784	NA	NA
UHGV-2148045_39	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2148045_39	UniRef90	UniRef90_A0A174RC35	RecT family	NA
UHGV-2148045_39	eggNOG-mapper	33035.JPJF01000071_gene4462	NA	NA
UHGV-2148045_39	Pfam	PF03837	RecT family	RecT
UHGV-2148045_39	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-2148045_40	PHROG	phrog_298	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-2148045_40	UniRef90	UniRef90_A0A1V4XP24	PD-(D/E)XK nuclease superfamily protein	NA
UHGV-2148045_40	eggNOG-mapper	1218075.BAYA01000003_gene606	NA	NA
UHGV-2148045_40	Structural annotation	PF12705, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-2148045_43	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-2148045_44	UniRef90	UniRef90_A0A316T8M7	Transcriptional regulator	NA
UHGV-2148045_44	eggNOG-mapper	1430331.EP10_02425	NA	NA
UHGV-2148045_44	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-2148045_46	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2148045_46	UniRef90	UniRef90_UPI000AC1197C	HNH endonuclease	NA
UHGV-2148045_46	eggNOG-mapper	861530.ALOZ01000074_gene990	HNH endonuclease	NA
UHGV-2148045_46	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-2148045_46	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-2148045_46	Pfam	PF04297	Putative helix-turn-helix protein, YlxM / p13 like	UPF0122
UHGV-2148045_46	Structural annotation	PF08281, PF13392, MF_00245, NF001066, COG2771	NA	NA
UHGV-2148045_47	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-2148045_47	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2148045_47	UniRef90	UniRef90_UPI000836D8D1	helix-turn-helix transcriptional regulator	NA
UHGV-2148045_47	eggNOG-mapper	642492.Clole_0718	DNA-binding helix-turn-helix protein	NA
UHGV-2148045_47	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-2148045_47	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2148045_47	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA