UHGV-2148968

Genome information

Genome length 37,029 bps

CDS count 56

Completeness 97.95% (high-quality)

geNomad score 0.9701

Prediction confidence Confident

Genome information
Genome ID	UHGV-2148968
vOTU ID	vOTU-007897
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029739\|Ga0245187_100667\|provirus_8509_45537
BioSample	SAMEA3449239
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.95% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9701
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	23.29
Jumbo phage	No

Genome content
Genome length	37,029 bps
GC content	38.12%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	91.21%
Average CDS length	607.82 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2148968_1	KOfam	K07816	E2.7.6.5; GTP pyrophosphokinase [EC:2.7.6.5]	NA
UHGV-2148968_1	UniRef90	UniRef90_W7DLC8	GTP-pyrophosphokinase	NA
UHGV-2148968_1	eggNOG-mapper	411469.EUBHAL_01337	Region found in RelA / SpoT proteins	NA
UHGV-2148968_1	Pfam	PF04607	Region found in RelA / SpoT proteins	RelA_SpoT
UHGV-2148968_1	COG	COG2357	ppGpp synthetase catalytic domain (RelA/SpoT-type nucleotidyltranferase)	NA
UHGV-2148968_2	PHROG	phrog_29601	NA	unknown function
UHGV-2148968_2	eggNOG-mapper	411468.CLOSCI_01508	NA	NA
UHGV-2148968_3	PHROG	phrog_134	NA	unknown function
UHGV-2148968_3	UniRef90	UniRef90_B0NDH9	XkdX family protein	NA
UHGV-2148968_3	eggNOG-mapper	411468.CLOSCI_01507	Phage uncharacterised protein (Phage_XkdX)	NA
UHGV-2148968_3	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-2148968_3	NCBIFam	TIGR01669.1	XkdX family protein	NA
UHGV-2148968_3	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-2148968_4	PHROG	phrog_20201	NA	unknown function
UHGV-2148968_5	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-2148968_5	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-2148968_5	UniRef90	UniRef90_A0A6N7YG55	Reverse transcriptase domain-containing protein	NA
UHGV-2148968_5	eggNOG-mapper	411468.CLOSCI_01505	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-2148968_5	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-2148968_5	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-2148968_5	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-2148968_5	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-2148968_6	PHROG	phrog_5302	tail protein	tail
UHGV-2148968_6	eggNOG-mapper	742741.HMPREF9475_00438	NA	NA
UHGV-2148968_6	Structural annotation	COG1262	NA	NA
UHGV-2148968_7	eggNOG-mapper	411468.CLOSCI_01503	NA	NA
UHGV-2148968_7	Pfam	PF11839	Alanine-zipper, major outer membrane lipoprotein	Alanine_zipper
UHGV-2148968_8	eggNOG-mapper	657322.FPR_22010	NA	NA
UHGV-2148968_9	PHROG	phrog_9994	NA	unknown function
UHGV-2148968_9	UniRef90	UniRef90_A0A173RZM4	Phage-related holin (Lysis protein)	NA
UHGV-2148968_9	eggNOG-mapper	469378.Ccur_02620	NA	NA
UHGV-2148968_9	Structural annotation	PF20747	NA	NA
UHGV-2148968_10	PHROG	phrog_538	minor tail protein	tail
UHGV-2148968_10	UniRef90	UniRef90_W0FH81	Phage head fiber protein	NA
UHGV-2148968_10	eggNOG-mapper	1256908.HMPREF0373_00466	NA	NA
UHGV-2148968_10	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-2148968_10	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-2148968_11	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-2148968_11	UniRef90	UniRef90_UPI0015709E93	phage tail protein	NA
UHGV-2148968_11	eggNOG-mapper	411461.DORFOR_01176	NA	NA
UHGV-2148968_11	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-2148968_12	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-2148968_12	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-2148968_12	UniRef90	UniRef90_A0A6N7Y0D1	PhageMin_Tail domain-containing protein	NA
UHGV-2148968_12	eggNOG-mapper	397290.C810_00429	Phage-related minor tail protein	NA
UHGV-2148968_12	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-2148968_12	COG	COG5280	Phage-related minor tail protein	NA
UHGV-2148968_12	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-2148968_13	eggNOG-mapper	1121866.AUGK01000006_gene886	NA	NA
UHGV-2148968_14	UniRef90	UniRef90_A0A316S919	Phage tail protein	NA
UHGV-2148968_14	eggNOG-mapper	1384484.AEQU_1175	NA	NA
UHGV-2148968_14	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-2148968_15	PHROG	phrog_5509	neck protein	connector
UHGV-2148968_15	UniRef90	UniRef90_W0FMR6	Gp9 protein	NA
UHGV-2148968_15	eggNOG-mapper	1027396.LMOSA_21450	NA	NA
UHGV-2148968_15	Structural annotation	TIGR01725, COG5005	NA	NA
UHGV-2148968_16	eggNOG-mapper	1121866.AUGK01000006_gene883	NA	NA
UHGV-2148968_16	Structural annotation	PF05657, COG3167	NA	NA
UHGV-2148968_17	PHROG	phrog_5635	head-tail adaptor	connector
UHGV-2148968_17	UniRef90	UniRef90_A0A1I3QJF5	Phage head-tail adaptor, putative, SPP1 family	NA
UHGV-2148968_17	eggNOG-mapper	1384484.AEQU_1178	NA	NA
UHGV-2148968_17	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2148968_19	PHROG	phrog_10	major head protein	head and packaging
UHGV-2148968_19	UniRef90	UniRef90_A0A173S099	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2148968_19	eggNOG-mapper	553184.ATORI0001_1179	Phage capsid family	NA
UHGV-2148968_19	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2148968_19	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2148968_19	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2148968_19	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2148968_20	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-2148968_20	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-2148968_20	UniRef90	UniRef90_A0A6N7Y0D2	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-2148968_20	eggNOG-mapper	610130.Closa_0743	Clp protease	NA
UHGV-2148968_20	Pfam	PF00574	Clp protease	CLP_protease
UHGV-2148968_20	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-2148968_20	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-2148968_21	PHROG	phrog_12	portal protein	head and packaging
UHGV-2148968_21	UniRef90	UniRef90_A0A173RYU7	Phage portal protein, HK97 family	NA
UHGV-2148968_21	eggNOG-mapper	349161.Dred_2606	Phage portal protein, HK97 family	NA
UHGV-2148968_21	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2148968_21	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-2148968_21	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2148968_21	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-2148968_22	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2148968_22	UniRef90	UniRef90_A0A173RYT5	Phage terminase-like protein, large subunit	NA
UHGV-2148968_22	eggNOG-mapper	610130.Closa_0741	Phage Terminase	NA
UHGV-2148968_22	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2148968_22	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2148968_22	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-2148968_23	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-2148968_23	UniRef90	UniRef90_UPI001124010C	P27 family phage terminase small subunit	NA
UHGV-2148968_23	eggNOG-mapper	349161.Dred_2608	NA	NA
UHGV-2148968_23	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-2148968_24	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2148968_24	UniRef90	UniRef90_A0A173RYP5	HNH endonuclease	NA
UHGV-2148968_24	eggNOG-mapper	936140.AEOT01000014_gene1352	HNH nucleases	NA
UHGV-2148968_24	Pfam	PF01844	HNH endonuclease	HNH
UHGV-2148968_24	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2148968_25	KOfam	K07273	acm; lysozyme	NA
UHGV-2148968_25	PHROG	phrog_291	endolysin	lysis
UHGV-2148968_25	UniRef90	UniRef90_A0A173RZN4	Autolytic lysozyme	NA
UHGV-2148968_25	eggNOG-mapper	411469.EUBHAL_01497	lysozyme activity	NA
UHGV-2148968_25	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-2148968_25	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-2148968_25	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-2148968_25	Structural annotation	PF01183, COG3757	NA	NA
UHGV-2148968_26	PHROG	phrog_443	holin	lysis
UHGV-2148968_26	UniRef90	UniRef90_UPI001BA9F6DF	holin	NA
UHGV-2148968_26	eggNOG-mapper	1235802.C823_05612	Putative lactococcus lactis phage r1t holin	NA
UHGV-2148968_26	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-2148968_26	Structural annotation	PF16945	NA	NA
UHGV-2148968_27	PHROG	phrog_937	hemolysin	other
UHGV-2148968_28	UniRef90	UniRef90_A0A173S152	RNA_pol_Rpb1_2 domain-containing protein	NA
UHGV-2148968_28	Pfam	PF00623	RNA polymerase Rpb1, domain 2	RNA_pol_Rpb1_2
UHGV-2148968_28	Structural annotation	PF03412	NA	NA
UHGV-2148968_29	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2148968_29	eggNOG-mapper	742765.HMPREF9457_02116	NA	NA
UHGV-2148968_29	Structural annotation	PF02996	NA	NA
UHGV-2148968_32	UniRef90	UniRef90_A0A1C5MB66	NA	NA
UHGV-2148968_32	Pfam	PF19789	NA	DUF6273
UHGV-2148968_32	Structural annotation	PF19789	NA	NA
UHGV-2148968_34	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-2148968_34	PHROG	phrog_15982	NA	unknown function
UHGV-2148968_34	UniRef90	UniRef90_A0A6N7YJE4	ParB domain-containing protein	NA
UHGV-2148968_34	eggNOG-mapper	742741.HMPREF9475_00414	NA	NA
UHGV-2148968_34	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-2148968_34	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-2148968_34	Structural annotation	PF12961, PF02195, MF_02015, MF_00684, TIGR04285, NF003443, COG1475, COG3097	NA	NA
UHGV-2148968_36	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-2148968_36	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-2148968_36	UniRef90	UniRef90_A0A173RYC6	Sporulation initiation inhibitor protein soj	NA
UHGV-2148968_36	eggNOG-mapper	411468.CLOSCI_01475	Cellulose biosynthesis protein BcsQ	NA
UHGV-2148968_36	Pfam	PF13614	AAA domain	AAA_31
UHGV-2148968_36	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-2148968_36	Structural annotation	PF13614, MF_00533, NF010443, COG1192	NA	NA
UHGV-2148968_37	PHROG	phrog_17690	NA	unknown function
UHGV-2148968_37	UniRef90	UniRef90_A0A6L5XWF4	3-dehydroquinate synthase	NA
UHGV-2148968_37	eggNOG-mapper	1235798.C817_03495	NA	NA
UHGV-2148968_38	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2148968_38	UniRef90	UniRef90_A0A4P8IFK4	NA	NA
UHGV-2148968_38	eggNOG-mapper	411468.CLOSCI_01469	NA	NA
UHGV-2148968_38	Structural annotation	PF21578	NA	NA
UHGV-2148968_49	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-2148968_49	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2148968_49	UniRef90	UniRef90_A0A173S0H0	Antitoxin PezA	NA
UHGV-2148968_49	eggNOG-mapper	445972.ANACOL_03315	NA	NA
UHGV-2148968_49	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2148968_49	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2148968_49	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-2148968_51	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-2148968_51	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-2148968_51	UniRef90	UniRef90_A0A173RY24	HTH-type transcriptional regulator sinR	NA
UHGV-2148968_51	eggNOG-mapper	411468.CLOSCI_01455	Helix-turn-helix XRE-family like proteins	NA
UHGV-2148968_51	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-2148968_51	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-2148968_52	eggNOG-mapper	1042156.CXIVA_01360	NA	NA
UHGV-2148968_53	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-2148968_53	PHROG	phrog_95	integrase	integration and excision
UHGV-2148968_53	UniRef90	UniRef90_A0A173RXF2	Transposase and inactivated derivatives	NA
UHGV-2148968_53	eggNOG-mapper	673832.D2IYS3_9CAUD	Recombinase	NA
UHGV-2148968_53	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-2148968_53	Pfam	PF07508	Recombinase	Recombinase
UHGV-2148968_53	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-2148968_53	Structural annotation	PF00239, NF041201, COG1961	NA	NA
UHGV-2148968_54	KOfam	K07816	E2.7.6.5; GTP pyrophosphokinase [EC:2.7.6.5]	NA
UHGV-2148968_54	UniRef90	UniRef90_A0A173RXY6	GTP pyrophosphokinase ywaC	NA
UHGV-2148968_54	eggNOG-mapper	411469.EUBHAL_01337	Region found in RelA / SpoT proteins	NA
UHGV-2148968_54	Pfam	PF04607	Region found in RelA / SpoT proteins	RelA_SpoT
UHGV-2148968_54	COG	COG2357	ppGpp synthetase catalytic domain (RelA/SpoT-type nucleotidyltranferase)	NA
UHGV-2148968_55	UniRef90	UniRef90_R5B4J7	Tetratricopeptide repeat protein	NA
UHGV-2148968_55	eggNOG-mapper	411469.EUBHAL_01335	NA	NA
UHGV-2148968_55	COG	COG0457	Tetratricopeptide (TPR) repeat	NA
UHGV-2148968_56	UniRef90	UniRef90_A0A414B784	HEAT repeat domain-containing protein	NA
UHGV-2148968_56	eggNOG-mapper	411469.EUBHAL_01334	HEAT repeats	NA
UHGV-2148968_56	Pfam	PF13646	HEAT repeats	HEAT_2
UHGV-2148968_56	COG	COG1413	HEAT repeat	NA