UHGV-2148977

Genome information

Genome length 34,431 bps

CDS count 50

Completeness 85.27% (medium-quality)

geNomad score 0.9742

Prediction confidence Confident

Genome information
Genome ID	UHGV-2148977
vOTU ID	vOTU-022785
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029784\|Ga0243806_1000728\|provirus_3_34433
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	85.27% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9742
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	52.84
Jumbo phage	No

Genome content
Genome length	34,431 bps
GC content	38.87%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	92.69%
Average CDS length	641.58 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2148977_1	PHROG	phrog_892	tail fiber protein	tail
UHGV-2148977_1	Pfam	PF03406	Phage tail fibre repeat	Phage_fiber_2
UHGV-2148977_2	eggNOG-mapper	1095770.CAHE01000010_gene1063	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-2148977_2	COG	COG4632	Sugar-P-sugar glycosidase (uncovering enzyme, UCE), NAGPA superfamily	NA
UHGV-2148977_3	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-2148977_3	UniRef90	UniRef90_R6MM87	Phage minor structural protein	NA
UHGV-2148977_3	eggNOG-mapper	755731.Clo1100_1175	Phage minor structural protein	NA
UHGV-2148977_3	Pfam	PF18994	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
UHGV-2148977_3	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-2148977_3	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-2148977_3	COG	COG4926	Phage-related protein	NA
UHGV-2148977_3	Structural annotation	PF06605, PF18994, TIGR01665, COG4926	NA	NA
UHGV-2148977_4	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-2148977_4	UniRef90	UniRef90_R6NBX8	Phage-related protein	NA
UHGV-2148977_4	eggNOG-mapper	86416.Clopa_3365	PFAM Phage tail protein	NA
UHGV-2148977_4	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-2148977_4	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-2148977_4	COG	COG4722	Phage-related protein YomH	NA
UHGV-2148977_4	Structural annotation	PF05709, PF21766, TIGR01633, COG4722	NA	NA
UHGV-2148977_5	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-2148977_5	PHROG	phrog_13339	tail length tape measure protein	tail
UHGV-2148977_5	UniRef90	UniRef90_A0A1C6E380	ATPase involved in DNA repair	NA
UHGV-2148977_5	eggNOG-mapper	1225805.J7KGW1_9CAUD	peptidoglycan catabolic process	NA
UHGV-2148977_5	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-2148977_5	Pfam	PF09851	Short C-terminal domain	SHOCT
UHGV-2148977_5	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-2148977_5	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-2148977_8	PHROG	phrog_88	major tail protein	tail
UHGV-2148977_8	UniRef90	UniRef90_R6MJ85	Major tail protein	NA
UHGV-2148977_8	eggNOG-mapper	1295642.H839_15928	NA	NA
UHGV-2148977_8	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-2148977_8	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-2148977_9	PHROG	phrog_78	tail terminator	connector
UHGV-2148977_9	eggNOG-mapper	1294142.CINTURNW_1695	NA	NA
UHGV-2148977_9	Structural annotation	PF05657, NF040576, COG3167	NA	NA
UHGV-2148977_11	PHROG	phrog_132	head-tail adaptor	connector
UHGV-2148977_11	UniRef90	UniRef90_UPI0016941CCC	phage head-tail connector protein	NA
UHGV-2148977_11	eggNOG-mapper	1567014.A0A0A7RTX9_9VIRU	Phage gp6-like head-tail connector protein	NA
UHGV-2148977_11	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-2148977_11	Structural annotation	PF05135	NA	NA
UHGV-2148977_13	PHROG	phrog_422	major head protein	head and packaging
UHGV-2148977_13	UniRef90	UniRef90_A0A7X5KS43	N4-gp56 family major capsid protein	NA
UHGV-2148977_13	eggNOG-mapper	1035189.HMPREF9954_0307	NA	NA
UHGV-2148977_13	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-2148977_14	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-2148977_14	UniRef90	UniRef90_UPI001F06CCD0	NA	NA
UHGV-2148977_14	eggNOG-mapper	1280689.AUJC01000003_gene966	NA	NA
UHGV-2148977_14	Pfam	PF14265	NA	DUF4355
UHGV-2148977_14	Structural annotation	PF14265	NA	NA
UHGV-2148977_16	PHROG	phrog_115	minor head protein	head and packaging
UHGV-2148977_16	UniRef90	UniRef90_A0A316P952	Phage head morphogenesis protein	NA
UHGV-2148977_16	eggNOG-mapper	1209989.TepiRe1_1146	Phage Mu protein F like protein	NA
UHGV-2148977_16	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-2148977_16	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-2148977_16	COG	COG2369	NA	NA
UHGV-2148977_16	Structural annotation	PF04233, PF21435, TIGR01641	NA	NA
UHGV-2148977_17	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2148977_17	UniRef90	UniRef90_R6M8W5	Phage protein HK97 gp10 family	NA
UHGV-2148977_17	eggNOG-mapper	1123405.AUMM01000017_gene2703	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-2148977_17	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2148977_17	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-2148977_17	Structural annotation	PF05069, TIGR01725, COG5005	NA	NA
UHGV-2148977_18	PHROG	phrog_64	portal protein	head and packaging
UHGV-2148977_18	UniRef90	UniRef90_A0A7X5KS83	Phage portal protein	NA
UHGV-2148977_18	eggNOG-mapper	764562.D7RWI5_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-2148977_18	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2148977_18	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-2148977_18	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-2148977_19	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2148977_19	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-2148977_19	UniRef90	UniRef90_A0A7X5R6H9	PBSX family phage terminase large subunit	NA
UHGV-2148977_19	eggNOG-mapper	203119.Cthe_2474	Phage terminase, large subunit, PBSX family	NA
UHGV-2148977_19	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-2148977_19	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-2148977_19	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2148977_19	COG	COG1783	Phage terminase large subunit	NA
UHGV-2148977_19	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2148977_20	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-2148977_20	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-2148977_20	UniRef90	UniRef90_UPI00148DCDDC	terminase small subunit	NA
UHGV-2148977_20	eggNOG-mapper	764561.D7RWC4_9CAUD	Terminase small subunit	NA
UHGV-2148977_20	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-2148977_20	Structural annotation	PF03592, COG3728	NA	NA
UHGV-2148977_21	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-2148977_21	PHROG	phrog_6380	DNA methyltransferase	other
UHGV-2148977_21	UniRef90	UniRef90_A0A3D0EBT8	N6_Mtase domain-containing protein (Fragment)	NA
UHGV-2148977_21	eggNOG-mapper	1111134.HMPREF1253_0397	site-specific DNA-methyltransferase (adenine-specific) activity	NA
UHGV-2148977_21	PADLOC	MTase_I_00002	Type I methyltransferase	RM
UHGV-2148977_21	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-2148977_21	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-2148977_22	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-2148977_22	PHROG	phrog_6380	DNA methyltransferase	other
UHGV-2148977_22	UniRef90	UniRef90_A0A3D0EBT1	N-6 DNA methylase (Fragment)	NA
UHGV-2148977_22	eggNOG-mapper	1444306.JFZC01000034_gene2643	type I restriction-modification system	NA
UHGV-2148977_22	PADLOC	MTase_I_00005	Type I methyltransferase	RM
UHGV-2148977_22	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-2148977_22	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-2148977_23	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2148977_23	UniRef90	UniRef90_A0A1I0FCM6	RNA polymerase sigma factor, sigma-70 family	NA
UHGV-2148977_23	eggNOG-mapper	903814.ELI_1292	NA	NA
UHGV-2148977_23	Pfam	PF07374	NA	DUF1492
UHGV-2148977_24	PHROG	phrog_4292	NA	unknown function
UHGV-2148977_27	Structural annotation	PF13384, COG2771	NA	NA
UHGV-2148977_29	PHROG	phrog_15609	NA	unknown function
UHGV-2148977_29	UniRef90	UniRef90_UPI00140878D5	NA	NA
UHGV-2148977_29	eggNOG-mapper	632245.CLP_1620	NA	NA
UHGV-2148977_29	Pfam	PF11300	NA	DUF3102
UHGV-2148977_29	COG	COG0188	DNA gyrase/topoisomerase IV, subunit A	NA
UHGV-2148977_29	Structural annotation	PF11300, PF07321, NF038070	NA	NA
UHGV-2148977_30	PHROG	phrog_8470	NA	unknown function
UHGV-2148977_30	UniRef90	UniRef90_UPI0002D9F0BD	PcfJ domain-containing protein	NA
UHGV-2148977_30	eggNOG-mapper	1007096.BAGW01000031_gene117	PcfJ-like protein	NA
UHGV-2148977_30	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-2148977_30	Structural annotation	PF14284	NA	NA
UHGV-2148977_31	PHROG	phrog_36399	NA	unknown function
UHGV-2148977_31	eggNOG-mapper	1007096.BAGW01000031_gene116	NA	NA
UHGV-2148977_34	KOfam	K03700	recU; recombination protein U	NA
UHGV-2148977_34	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2148977_34	UniRef90	UniRef90_A0A4S2H9R9	Holliday junction resolvase RecU	NA
UHGV-2148977_34	eggNOG-mapper	1211817.CCAT010000012_gene2726	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-2148977_34	Pfam	PF03838	Recombination protein U	RecU
UHGV-2148977_34	COG	COG3331	Penicillin-binding protein-related factor A, putative recombinase	NA
UHGV-2148977_34	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-2148977_36	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2148977_36	UniRef90	UniRef90_A0A1I5LZL1	Relaxase/Mobilisation nuclease domain-containing protein	NA
UHGV-2148977_36	eggNOG-mapper	483218.BACPEC_01173	NA	NA
UHGV-2148977_36	Structural annotation	PF01446	NA	NA
UHGV-2148977_41	Structural annotation	PF13601, NF041230, COG1846	NA	NA
UHGV-2148977_46	PHROG	phrog_750	NA	unknown function
UHGV-2148977_46	eggNOG-mapper	478749.BRYFOR_08527	NA	NA
UHGV-2148977_46	Structural annotation	PF03444, COG5045	NA	NA
UHGV-2148977_47	PHROG	phrog_643	transcriptional regulator	transcription regulation
UHGV-2148977_47	UniRef90	UniRef90_UPI00148CD1FB	aspartate ammonia-lyase	NA
UHGV-2148977_47	eggNOG-mapper	1118063.I7I4C8_9CAUD	NA	NA
UHGV-2148977_47	Pfam	PF11195	NA	DUF2829
UHGV-2148977_47	Structural annotation	PF11195	NA	NA
UHGV-2148977_48	UniRef90	UniRef90_A0A355NKG0	XRE family transcriptional regulator	NA
UHGV-2148977_48	eggNOG-mapper	411461.DORFOR_00030	Helix-turn-helix XRE-family like proteins	NA
UHGV-2148977_48	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2148977_48	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-2148977_49	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2148977_49	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2148977_49	UniRef90	UniRef90_U2PNM0	DNA-binding helix-turn-helix protein	NA
UHGV-2148977_49	eggNOG-mapper	1256908.HMPREF0373_00219	sequence-specific DNA binding	NA
UHGV-2148977_49	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-2148977_49	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2148977_49	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2148977_50	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-2148977_50	PHROG	phrog_95	integrase	integration and excision
UHGV-2148977_50	UniRef90	UniRef90_UPI001C63F9A1	recombinase family protein	NA
UHGV-2148977_50	eggNOG-mapper	1120746.CCNL01000014_gene2079	Recombinase	NA
UHGV-2148977_50	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-2148977_50	Pfam	PF07508	Recombinase	Recombinase
UHGV-2148977_50	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-2148977_50	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA