UHGV-2149695

Genome information

Genome length 37,159 bps

CDS count 44

Completeness 93.39% (high-quality)

geNomad score 0.9793

Prediction confidence Confident

Genome information
Genome ID	UHGV-2149695
vOTU ID	vOTU-014622
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029762\|Ga0245183_100066\|provirus_26830_63988
BioSample	SAMEA3449235
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	93.39% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	7
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9793
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	15.09
Jumbo phage	No

Genome content
Genome length	37,159 bps
GC content	60.86%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	44
CDS density	94.83%
Average CDS length	803.25 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2149695_1	eggNOG-mapper	1519439.JPJG01000060_gene1905	NA	NA
UHGV-2149695_2	eggNOG-mapper	1519439.JPJG01000060_gene1905	NA	NA
UHGV-2149695_3	Structural annotation	PF05384, TIGR02971	NA	NA
UHGV-2149695_4	PHROG	phrog_21357	endolysin	lysis
UHGV-2149695_4	UniRef90	UniRef90_G9YP37	SLH domain-containing protein	NA
UHGV-2149695_4	eggNOG-mapper	243164.DET1070	SMART Glycoside hydrolase, family 25 subgroup	NA
UHGV-2149695_4	Pfam	PF05257	CHAP domain	CHAP
UHGV-2149695_4	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-2149695_4	COG	COG1388	LysM repeat	NA
UHGV-2149695_4	Structural annotation	PF10030, TIGR02594, COG3942	NA	NA
UHGV-2149695_5	PHROG	phrog_13256	NA	unknown function
UHGV-2149695_5	eggNOG-mapper	1226322.HMPREF1545_00132	NA	NA
UHGV-2149695_6	UniRef90	UniRef90_A0A1T5AMW7	NAGPA domain-containing protein	NA
UHGV-2149695_6	Structural annotation	PF09992, COG4632	NA	NA
UHGV-2149695_7	PHROG	phrog_199	holin	lysis
UHGV-2149695_7	UniRef90	UniRef90_UPI001C033395	phage holin family protein	NA
UHGV-2149695_7	eggNOG-mapper	693746.OBV_24950	Bacteriophage holin family	NA
UHGV-2149695_7	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-2149695_7	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-2149695_7	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-2149695_9	UniRef90	UniRef90_A0A1Y3S8H4	Sigma70_r4 domain-containing protein	NA
UHGV-2149695_9	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-2149695_9	Pfam	PF04297	Putative helix-turn-helix protein, YlxM / p13 like	UPF0122
UHGV-2149695_9	NCBIFam	TIGR02937.1	sigma-70 family RNA polymerase sigma factor	NA
UHGV-2149695_9	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-2149695_9	Structural annotation	PF00196, PF04545, NF006146, NF003257, COG2771	NA	NA
UHGV-2149695_13	KOfam	K19719	COL2A; collagen type II alpha	NA
UHGV-2149695_13	PHROG	phrog_6320	tail fiber protein	tail
UHGV-2149695_13	UniRef90	UniRef90_A0A8D9PE13	Virion structural protein	NA
UHGV-2149695_13	eggNOG-mapper	1408437.JNJN01000002_gene1389	NA	NA
UHGV-2149695_13	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-2149695_14	PHROG	phrog_3287	virion structural protein	head and packaging
UHGV-2149695_14	eggNOG-mapper	1232449.BAHV02000016_gene1816	NA	NA
UHGV-2149695_14	Structural annotation	PF11134, MF_01282, TIGR03300, COG5276	NA	NA
UHGV-2149695_15	PHROG	phrog_13046	NA	unknown function
UHGV-2149695_15	Structural annotation	PF20387	NA	NA
UHGV-2149695_17	UniRef90	UniRef90_R7FUR2	Mu-like prophage major head subunit gpt-like protein	NA
UHGV-2149695_17	Structural annotation	PF19774, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-2149695_18	Structural annotation	COG5471	NA	NA
UHGV-2149695_20	PHROG	phrog_156	portal protein	head and packaging
UHGV-2149695_20	Structural annotation	PF12236, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-2149695_21	KOfam	K21523	gp17; terminase, large subunit [EC:3.1.-.-]	NA
UHGV-2149695_21	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-2149695_21	UniRef90	UniRef90_G4KPW2	Putative terminase large subunit	NA
UHGV-2149695_21	eggNOG-mapper	693746.OBV_23980	phage Terminase large subunit	NA
UHGV-2149695_21	COG	COG4373	Mu-like prophage FluMu protein gp28	NA
UHGV-2149695_21	Structural annotation	PF03237, PF17289, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-2149695_22	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-2149695_22	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-2149695_22	UniRef90	UniRef90_A0A4R2M2T5	Phage terminase small subunit	NA
UHGV-2149695_22	eggNOG-mapper	1123508.JH636454_gene5742	Terminase small subunit	NA
UHGV-2149695_22	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-2149695_22	COG	COG3728	Phage terminase, small subunit	NA
UHGV-2149695_22	Structural annotation	PF03592, COG3728	NA	NA
UHGV-2149695_23	eggNOG-mapper	1226322.HMPREF1545_00288	NA	NA
UHGV-2149695_24	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2149695_24	eggNOG-mapper	1226322.HMPREF1545_03841	NA	NA
UHGV-2149695_27	PHROG	phrog_872	NA	unknown function
UHGV-2149695_27	UniRef90	UniRef90_UPI001D07820E	NA	NA
UHGV-2149695_27	eggNOG-mapper	278197.PEPE_0778	NA	NA
UHGV-2149695_27	Pfam	PF11195	NA	DUF2829
UHGV-2149695_27	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-2149695_27	Structural annotation	PF11195	NA	NA
UHGV-2149695_28	Structural annotation	NF040595	NA	NA
UHGV-2149695_32	PHROG	phrog_15609	NA	unknown function
UHGV-2149695_32	UniRef90	UniRef90_UPI001C102D5E	NA	NA
UHGV-2149695_32	eggNOG-mapper	693746.OBV_24000	NA	NA
UHGV-2149695_32	Pfam	PF11300	NA	DUF3102
UHGV-2149695_32	COG	COG2433	Possible nuclease of RNase H fold, RuvC/YqgF family	NA
UHGV-2149695_32	Structural annotation	PF11300, PF15591, PF07321, NF038070, NF008636, COG4568	NA	NA
UHGV-2149695_33	PHROG	phrog_8470	NA	unknown function
UHGV-2149695_33	UniRef90	UniRef90_UPI001C1063FF	PcfJ domain-containing protein	NA
UHGV-2149695_33	eggNOG-mapper	1378168.N510_01842	PcfJ-like protein	NA
UHGV-2149695_33	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-2149695_33	Structural annotation	PF14284	NA	NA
UHGV-2149695_34	PHROG	phrog_38338	NA	unknown function
UHGV-2149695_34	eggNOG-mapper	693746.OBV_24020	NA	NA
UHGV-2149695_35	PHROG	phrog_7566	NA	unknown function
UHGV-2149695_35	eggNOG-mapper	693746.OBV_24070	NA	NA
UHGV-2149695_39	PHROG	phrog_6058	NA	unknown function
UHGV-2149695_39	eggNOG-mapper	693746.OBV_19810	NA	NA
UHGV-2149695_39	Structural annotation	PF12728, TIGR01764	NA	NA
UHGV-2149695_41	UniRef90	UniRef90_A0A316SDW5	Transcriptional regulator	NA
UHGV-2149695_41	eggNOG-mapper	1430331.EP10_02425	NA	NA
UHGV-2149695_42	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-2149695_42	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-2149695_42	UniRef90	UniRef90_G4KRC4	Peptidase_S24 domain-containing protein	NA
UHGV-2149695_42	eggNOG-mapper	693746.OBV_01960	Peptidase S24-like	NA
UHGV-2149695_42	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2149695_42	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-2149695_42	COG	COG0864	Metal-responsive transcriptional regulator, contains CopG/Arc/MetJ DNA-binding domain	NA
UHGV-2149695_42	Structural annotation	PF00717, PF12844, MF_00015, TIGR00498, TIGR03070, COG1974, COG1476	NA	NA
UHGV-2149695_43	PHROG	phrog_9605	NA	unknown function
UHGV-2149695_43	UniRef90	UniRef90_A0A1C7FRW2	NA	NA
UHGV-2149695_43	eggNOG-mapper	1410628.JNKS01000004_gene2023	NA	NA
UHGV-2149695_43	Pfam	PF12358	NA	DUF3644
UHGV-2149695_43	Pfam	PF18740	EC042_2821-like Restriction Endonuclease-like domain	EC042_2821
UHGV-2149695_43	Structural annotation	PF18740, PF12358, COG1895	NA	NA
UHGV-2149695_44	KOfam	K14059	int; integrase	NA
UHGV-2149695_44	PHROG	phrog_1	integrase	integration and excision
UHGV-2149695_44	UniRef90	UniRef90_A0A3D4D8C4	Integrase	NA
UHGV-2149695_44	eggNOG-mapper	742738.HMPREF9460_00840	Belongs to the 'phage' integrase family	NA
UHGV-2149695_44	Pfam	PF02899	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_1
UHGV-2149695_44	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2149695_44	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-2149695_44	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA