UHGV-2149856

Genome information

Genome length 42,116 bps

CDS count 56

Completeness 98.87% (high-quality)

geNomad score 0.9684

Prediction confidence Confident

Genome information
Genome ID	UHGV-2149856
vOTU ID	vOTU-067092
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029725\|Ga0245208_100030\|provirus_117724_159839
BioSample	SAMEA3449260
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.87% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	3
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9684
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	21.81
Jumbo phage	No

Genome content
Genome length	42,116 bps
GC content	51.32%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	89.27%
Average CDS length	676.34 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2149856_1	UniRef90	UniRef90_A0A417W5L9	Peptidase_M23 domain-containing protein	NA
UHGV-2149856_1	eggNOG-mapper	1408437.JNJN01000039_gene389	heme binding	NA
UHGV-2149856_1	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-2149856_3	KOfam	K01371	CTSK; cathepsin K [EC:3.4.22.38]	NA
UHGV-2149856_3	PHROG	phrog_16701	peptidase	other
UHGV-2149856_3	UniRef90	UniRef90_A0A396NGZ7	Pept_C1 domain-containing protein	NA
UHGV-2149856_3	eggNOG-mapper	588581.Cpap_1819	Papain family cysteine protease	NA
UHGV-2149856_3	Pfam	PF00112	Papain family cysteine protease	Peptidase_C1
UHGV-2149856_3	Pfam	PF07833	Copper amine oxidase N-terminal domain	Cu_amine_oxidN1
UHGV-2149856_3	COG	COG4870	Cysteine protease, C1A family	NA
UHGV-2149856_3	Structural annotation	PF00112, PF07833, COG4870	NA	NA
UHGV-2149856_4	KOfam	K17733	cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]	NA
UHGV-2149856_4	PHROG	phrog_6523	endolysin	lysis
UHGV-2149856_4	UniRef90	UniRef90_A0A401LGC2	Peptidase_M15_4 domain-containing protein	NA
UHGV-2149856_4	eggNOG-mapper	642492.Clole_2733	D-alanyl-D-alanine carboxypeptidase	NA
UHGV-2149856_4	Pfam	PF13539	D-alanyl-D-alanine carboxypeptidase	Peptidase_M15_4
UHGV-2149856_4	COG	COG1876	LD-carboxypeptidase LdcB, LAS superfamily	NA
UHGV-2149856_5	PHROG	phrog_199	holin	lysis
UHGV-2149856_5	UniRef90	UniRef90_R5ABW3	Putative holin	NA
UHGV-2149856_5	eggNOG-mapper	411460.RUMTOR_02100	NA	NA
UHGV-2149856_5	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-2149856_5	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-2149856_5	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-2149856_6	PHROG	phrog_2310	NA	unknown function
UHGV-2149856_6	eggNOG-mapper	1460635.JCM19038_2823	NA	NA
UHGV-2149856_8	Structural annotation	PF13157	NA	NA
UHGV-2149856_9	PHROG	phrog_18723	NA	unknown function
UHGV-2149856_10	eggNOG-mapper	665956.HMPREF1032_03261	NA	NA
UHGV-2149856_11	PHROG	phrog_3287	virion structural protein	head and packaging
UHGV-2149856_11	eggNOG-mapper	693746.OBV_23870	NA	NA
UHGV-2149856_11	Structural annotation	PF11134, MF_01282, TIGR03300, COG5276	NA	NA
UHGV-2149856_12	PHROG	phrog_13046	NA	unknown function
UHGV-2149856_12	eggNOG-mapper	693746.OBV_23880	NA	NA
UHGV-2149856_12	Structural annotation	PF20387	NA	NA
UHGV-2149856_13	PHROG	phrog_371	major head protein	head and packaging
UHGV-2149856_13	UniRef90	UniRef90_R5AAY6	Mu-like_gpT domain-containing protein	NA
UHGV-2149856_13	eggNOG-mapper	1226322.HMPREF1545_03848	NA	NA
UHGV-2149856_13	Pfam	PF10124	Mu-like prophage major head subunit gpT	Mu-like_gpT
UHGV-2149856_13	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2149856_14	PHROG	phrog_24113	NA	unknown function
UHGV-2149856_14	Structural annotation	PF11133, COG5471	NA	NA
UHGV-2149856_15	PHROG	phrog_35275	NA	unknown function
UHGV-2149856_15	eggNOG-mapper	693746.OBV_23910	NA	NA
UHGV-2149856_18	PHROG	phrog_156	portal protein	head and packaging
UHGV-2149856_18	eggNOG-mapper	1519439.JPJG01000060_gene1886	NA	NA
UHGV-2149856_18	Structural annotation	PF16510, MF_04120, TIGR01542, COG4695	NA	NA
UHGV-2149856_19	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-2149856_19	PHROG	phrog_216	integrase	integration and excision
UHGV-2149856_19	UniRef90	UniRef90_R5AM78	Integrase family protein	NA
UHGV-2149856_19	eggNOG-mapper	97138.C820_00621	integrase family	NA
UHGV-2149856_19	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2149856_19	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2149856_19	Structural annotation	PF00589, MF_02055, NF040815, COG4973	NA	NA
UHGV-2149856_20	PHROG	phrog_24361	terminase	head and packaging
UHGV-2149856_20	UniRef90	UniRef90_R5AHR8	Putative terminase large subunit	NA
UHGV-2149856_20	eggNOG-mapper	693746.OBV_23980	phage Terminase large subunit	NA
UHGV-2149856_20	COG	COG4373	Mu-like prophage FluMu protein gp28	NA
UHGV-2149856_20	Structural annotation	PF03237, PF17289, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-2149856_21	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-2149856_21	UniRef90	UniRef90_A0A316MAA8	Xaa-His dipeptidase	NA
UHGV-2149856_21	eggNOG-mapper	97138.C820_00620	transposase activity	NA
UHGV-2149856_21	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-2149856_21	Structural annotation	PF07141	NA	NA
UHGV-2149856_22	KOfam	K06218	relE, stbE; mRNA interferase RelE/StbE	NA
UHGV-2149856_22	PHROG	phrog_1213	RelE-like toxin	moron, auxiliary metabolic gene and host takeover
UHGV-2149856_22	UniRef90	UniRef90_R5AEV9	Cytotoxic translational repressor of toxin-antitoxin stability system	NA
UHGV-2149856_22	eggNOG-mapper	97139.C824_00468	ParE toxin of type II toxin-antitoxin system, parDE	NA
UHGV-2149856_22	Pfam	PF05016	ParE toxin of type II toxin-antitoxin system, parDE	ParE_toxin
UHGV-2149856_22	COG	COG2026	mRNA-degrading endonuclease RelE, toxin component of the RelBE toxin-antitoxin system	NA
UHGV-2149856_22	Structural annotation	PF05016, TIGR00053, COG2026	NA	NA
UHGV-2149856_23	eggNOG-mapper	1235792.C808_02931	NA	NA
UHGV-2149856_24	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-2149856_24	UniRef90	UniRef90_R5AM83	HTH cro/C1-type domain-containing protein	NA
UHGV-2149856_24	eggNOG-mapper	445972.ANACOL_01859	Cro/C1-type HTH DNA-binding domain	NA
UHGV-2149856_24	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-2149856_24	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-2149856_24	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-2149856_27	Structural annotation	PF07374, TIGR01636, COG2739	NA	NA
UHGV-2149856_30	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-2149856_30	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-2149856_30	UniRef90	UniRef90_R5AEW4	DNA helicase	NA
UHGV-2149856_30	eggNOG-mapper	97138.C820_00625	Participates in initiation and elongation during chromosome replication	NA
UHGV-2149856_30	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-2149856_30	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-2149856_30	COG	COG0305	Replicative DNA helicase	NA
UHGV-2149856_30	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-2149856_31	PHROG	phrog_6251	replisome organizer DnaA-like	DNA, RNA and nucleotide metabolism
UHGV-2149856_31	UniRef90	UniRef90_R5AB02	DnaD domain protein	NA
UHGV-2149856_31	eggNOG-mapper	1231057.AMGD01000018_gene3636	Conserved phage C-terminus (Phg_2220_C)	NA
UHGV-2149856_31	COG	COG3935	DNA replication protein DnaD	NA
UHGV-2149856_31	Structural annotation	PF09681, TIGR01714, COG1846	NA	NA
UHGV-2149856_34	eggNOG-mapper	760568.Desku_0919	NA	NA
UHGV-2149856_34	Structural annotation	PF03787, TIGR02581, COG1604	NA	NA
UHGV-2149856_35	PHROG	phrog_24386	NA	unknown function
UHGV-2149856_35	eggNOG-mapper	742740.HMPREF9474_02291	phosphatase activity	NA
UHGV-2149856_35	COG	COG0561	Hydroxymethylpyrimidine pyrophosphatase and other HAD family phosphatases	NA
UHGV-2149856_38	PHROG	phrog_7674	NA	unknown function
UHGV-2149856_38	eggNOG-mapper	1235793.C809_02629	NA	NA
UHGV-2149856_38	Structural annotation	PF06003	NA	NA
UHGV-2149856_39	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2149856_39	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2149856_39	UniRef90	UniRef90_A0A401LG78	HTH cro/C1-type domain-containing protein	NA
UHGV-2149856_39	eggNOG-mapper	1378168.N510_00479	sequence-specific DNA binding	NA
UHGV-2149856_39	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2149856_39	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2149856_39	Structural annotation	PF12844, MF_00535, NF041951, COG1396	NA	NA
UHGV-2149856_41	PHROG	phrog_774	NA	unknown function
UHGV-2149856_41	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-2149856_42	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-2149856_42	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2149856_42	UniRef90	UniRef90_R5AMA1	Single-stranded DNA-binding protein	NA
UHGV-2149856_42	eggNOG-mapper	97138.C820_02339	Single-stranded DNA-binding protein	NA
UHGV-2149856_42	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2149856_42	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-2149856_42	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2149856_42	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-2149856_42	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-2149856_53	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-2149856_53	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-2149856_53	UniRef90	UniRef90_R5AEY7	Helix-turn-helix protein	NA
UHGV-2149856_53	eggNOG-mapper	1235797.C816_03553	DNA-binding helix-turn-helix protein	NA
UHGV-2149856_53	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-2149856_53	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2149856_53	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-2149856_55	UniRef90	UniRef90_A0A4U7JFZ1	Peptidoglycan-binding protein	NA
UHGV-2149856_55	eggNOG-mapper	1163671.JAGI01000002_gene1685	Flagellar rod assembly protein muramidase FlgJ	NA
UHGV-2149856_55	COG	COG1705	Flagellum-specific peptidoglycan hydrolase FlgJ	NA
UHGV-2149856_56	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-2149856_56	PHROG	phrog_95	integrase	integration and excision
UHGV-2149856_56	UniRef90	UniRef90_R5AMB7	Recombinase	NA
UHGV-2149856_56	eggNOG-mapper	697281.Mahau_2563	resolvase	NA
UHGV-2149856_56	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-2149856_56	Pfam	PF07508	Recombinase	Recombinase
UHGV-2149856_56	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2149856_56	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA