UHGV-2150499

Genome information

Genome length 33,060 bps

CDS count 45

Completeness 71.40% (medium-quality)

geNomad score 0.9586

Prediction confidence Confident

Genome information
Genome ID	UHGV-2150499
vOTU ID	vOTU-015369
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029726\|Ga0245201_100170\|provirus_2_33061
BioSample	NA
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	71.40% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9586
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.85
Jumbo phage	No

Genome content
Genome length	33,060 bps
GC content	57.44%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	45
CDS density	90.93%
Average CDS length	672.00 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2150499_1	PHROG	phrog_1220	head protein	head and packaging
UHGV-2150499_1	eggNOG-mapper	1230342.CTM_17042	COG NOG18825 non supervised orthologous group	NA
UHGV-2150499_1	Structural annotation	PF20747	NA	NA
UHGV-2150499_2	PHROG	phrog_538	minor tail protein	tail
UHGV-2150499_2	UniRef90	UniRef90_A0A8J6IQQ3	Siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-2150499_2	eggNOG-mapper	755731.Clo1100_0557	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-2150499_2	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-2150499_2	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-2150499_3	PHROG	phrog_36410	NA	unknown function
UHGV-2150499_3	UniRef90	UniRef90_A0A8J6IR89	Phage tail family protein	NA
UHGV-2150499_3	eggNOG-mapper	1321782.HMPREF1986_02277	PFAM Phage tail protein	NA
UHGV-2150499_3	COG	COG4722	Phage-related protein YomH	NA
UHGV-2150499_3	Structural annotation	PF16774, PF21766, TIGR01633, COG4722	NA	NA
UHGV-2150499_4	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-2150499_4	eggNOG-mapper	1216932.CM240_0683	tape measure	NA
UHGV-2150499_4	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-2150499_4	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-2150499_4	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-2150499_4	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-2150499_5	PHROG	phrog_706	NA	unknown function
UHGV-2150499_5	UniRef90	UniRef90_A0A174K5P2	Bacteriophage Gp15 protein	NA
UHGV-2150499_5	eggNOG-mapper	411471.SUBVAR_06986	Bacteriophage Gp15 protein	NA
UHGV-2150499_5	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-2150499_5	Structural annotation	PF06854	NA	NA
UHGV-2150499_7	PHROG	phrog_3099	NA	unknown function
UHGV-2150499_7	eggNOG-mapper	742723.HMPREF9477_00900	NA	NA
UHGV-2150499_7	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2150499_9	PHROG	phrog_3266	tail completion	connector
UHGV-2150499_9	Structural annotation	PF12691	NA	NA
UHGV-2150499_10	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2150499_10	eggNOG-mapper	525255.HMPREF0077_0381	Minor capsid protein	NA
UHGV-2150499_11	Pfam	PF20536	NA	DUF6751
UHGV-2150499_12	PHROG	phrog_541	head-tail adaptor	connector
UHGV-2150499_13	PHROG	phrog_422	major head protein	head and packaging
UHGV-2150499_13	UniRef90	UniRef90_W0U896	Phage major capsid protein	NA
UHGV-2150499_13	eggNOG-mapper	1160721.RBI_II00538	NA	NA
UHGV-2150499_13	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-2150499_14	UniRef90	UniRef90_A0A1C6B5I1	Phage minor structural protein GP20	NA
UHGV-2150499_14	Structural annotation	PF06810	NA	NA
UHGV-2150499_15	PHROG	phrog_6332	NA	unknown function
UHGV-2150499_15	UniRef90	UniRef90_E2ZIH6	Cys_rich_CPCC domain-containing protein	NA
UHGV-2150499_15	eggNOG-mapper	748224.HMPREF9436_01470	Cysteine-rich CPCC	NA
UHGV-2150499_15	Pfam	PF14206	Cysteine-rich CPCC	Cys_rich_CPCC
UHGV-2150499_15	Structural annotation	PF14206	NA	NA
UHGV-2150499_16	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2150499_16	UniRef90	UniRef90_A0A136WBX5	Phage minor capsid protein 2	NA
UHGV-2150499_16	eggNOG-mapper	693746.OBV_18050	Phage minor capsid protein 2	NA
UHGV-2150499_16	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2150499_16	COG	COG2369	NA	NA
UHGV-2150499_17	PHROG	phrog_533	portal protein	head and packaging
UHGV-2150499_17	UniRef90	UniRef90_A0A136WBU7	Phage portal protein, SPP1 Gp6-like	NA
UHGV-2150499_17	eggNOG-mapper	663278.Ethha_0500	NA	NA
UHGV-2150499_17	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2150499_18	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2150499_18	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-2150499_18	UniRef90	UniRef90_A0A396NWZ4	PBSX family phage terminase large subunit	NA
UHGV-2150499_18	eggNOG-mapper	246194.CHY_1680	Terminase RNAseH like domain	NA
UHGV-2150499_18	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-2150499_18	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-2150499_18	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2150499_18	COG	COG1783	Phage terminase large subunit	NA
UHGV-2150499_18	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2150499_19	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-2150499_19	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-2150499_19	UniRef90	UniRef90_A0A3D5IBW1	Terminase small subunit	NA
UHGV-2150499_19	eggNOG-mapper	1256908.HMPREF0373_00489	Terminase small subunit	NA
UHGV-2150499_19	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-2150499_19	COG	COG3728	Phage terminase, small subunit	NA
UHGV-2150499_19	Structural annotation	PF03592, COG3728	NA	NA
UHGV-2150499_20	Structural annotation	PF15968	NA	NA
UHGV-2150499_21	UniRef90	UniRef90_F9P4M3	Conserved domain protein	NA
UHGV-2150499_21	eggNOG-mapper	1035184.HMPREF1042_0420	NA	NA
UHGV-2150499_21	Structural annotation	PF20505, NF001461	NA	NA
UHGV-2150499_22	Structural annotation	PF04545, MF_00674, NF001072, COG1342	NA	NA
UHGV-2150499_23	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-2150499_23	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-2150499_23	UniRef90	UniRef90_A0A1Q6PWP3	DNA helicase	NA
UHGV-2150499_23	eggNOG-mapper	663278.Ethha_2283	Participates in initiation and elongation during chromosome replication	NA
UHGV-2150499_23	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-2150499_23	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-2150499_23	COG	COG0305	Replicative DNA helicase	NA
UHGV-2150499_23	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-2150499_24	eggNOG-mapper	1243664.CAVL020000020_gene3196	Replication initiation and membrane attachment	NA
UHGV-2150499_24	COG	COG3935	DNA replication protein DnaD	NA
UHGV-2150499_25	PHROG	phrog_398	NA	unknown function
UHGV-2150499_25	UniRef90	UniRef90_UPI00137A6F13	putative HNHc nuclease	NA
UHGV-2150499_25	eggNOG-mapper	1485543.JMME01000021_gene802	Putative HNHc nuclease	NA
UHGV-2150499_25	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-2150499_25	Structural annotation	PF16784	NA	NA
UHGV-2150499_27	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-2150499_27	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-2150499_27	UniRef90	UniRef90_A0A358Q127	MBL fold metallo-hydrolase	NA
UHGV-2150499_27	eggNOG-mapper	926561.KB900622_gene661	Metallo-beta-lactamase superfamily	NA
UHGV-2150499_27	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-2150499_27	dbAPIS	APIS058	NA	NA
UHGV-2150499_27	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-2150499_27	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-2150499_28	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-2150499_28	PHROG	phrog_34753	NA	unknown function
UHGV-2150499_28	UniRef90	UniRef90_A0A5B0CQ44	Recombinase RecT	NA
UHGV-2150499_28	eggNOG-mapper	666686.B1NLA3E_01105	RecT family	NA
UHGV-2150499_28	Pfam	PF03837	RecT family	RecT
UHGV-2150499_28	Structural annotation	PF03837, NF007351	NA	NA
UHGV-2150499_29	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-2150499_29	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2150499_29	UniRef90	UniRef90_A0A837EI43	AAA_23 domain-containing protein	NA
UHGV-2150499_29	eggNOG-mapper	1178537.BA1_15609	nuclear chromosome segregation	NA
UHGV-2150499_29	Pfam	PF13476	AAA domain	AAA_23
UHGV-2150499_29	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-2150499_29	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-2150499_35	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2150499_35	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2150499_35	UniRef90	UniRef90_UPI0013798007	helix-turn-helix domain-containing protein	NA
UHGV-2150499_35	eggNOG-mapper	1282664.H354_06791	Transcriptional regulator	NA
UHGV-2150499_35	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2150499_35	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2150499_35	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-2150499_36	UniRef90	UniRef90_UPI0013794FA4	helix-turn-helix domain-containing protein	NA
UHGV-2150499_36	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-2150499_36	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2150499_36	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-2150499_38	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-2150499_38	PHROG	phrog_5823	transcriptional regulator	transcription regulation
UHGV-2150499_38	UniRef90	UniRef90_A0A315WZC7	DNA-binding protein	NA
UHGV-2150499_38	eggNOG-mapper	97138.C820_00804	sequence-specific DNA binding	NA
UHGV-2150499_38	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-2150499_38	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2150499_38	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2150499_38	Structural annotation	PF13443, NF041951, COG3655	NA	NA
UHGV-2150499_39	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-2150499_39	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2150499_39	UniRef90	UniRef90_UPI000B35D4B7	helix-turn-helix transcriptional regulator	NA
UHGV-2150499_39	eggNOG-mapper	999425.HMPREF9186_00999	Transcriptional	NA
UHGV-2150499_39	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-2150499_39	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2150499_39	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-2150499_39	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-2150499_40	PHROG	phrog_87	metallo-protease	other
UHGV-2150499_40	UniRef90	UniRef90_A0A3E2XRF6	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-2150499_40	eggNOG-mapper	1507.HMPREF0262_00423	IrrE N-terminal-like domain	NA
UHGV-2150499_40	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-2150499_40	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-2150499_40	Structural annotation	PF06114, COG2856	NA	NA
UHGV-2150499_41	eggNOG-mapper	1462527.CCDM010000001_gene1872	NA	NA
UHGV-2150499_43	PHROG	phrog_5783	NA	unknown function
UHGV-2150499_43	UniRef90	UniRef90_A0A7X2P6J8	NYN domain-containing protein	NA
UHGV-2150499_43	eggNOG-mapper	445971.ANASTE_00686	NYN domain	NA
UHGV-2150499_43	Pfam	PF01936	NYN domain	NYN
UHGV-2150499_43	COG	COG1432	NYN domain, predicted PIN-related RNAse, tRNA/rRNA maturation	NA
UHGV-2150499_43	Structural annotation	PF01936, TIGR00288, COG1432	NA	NA
UHGV-2150499_44	KOfam	K07075	NA	NA
UHGV-2150499_44	UniRef90	UniRef90_A0A3D4QXW9	Toxin-antitoxin system, antitoxin component	NA
UHGV-2150499_44	eggNOG-mapper	718252.FP2_31830	Nucleotidyltransferase substrate binding protein like	NA
UHGV-2150499_44	Pfam	PF18765	Polymerase beta, Nucleotidyltransferase	Polbeta
UHGV-2150499_44	Pfam	PF08780	Nucleotidyltransferase substrate binding protein like	NTase_sub_bind
UHGV-2150499_44	NCBIFam	TIGR01987.1	HI0074 family nucleotidyltransferase substrate-binding subunit	NA
UHGV-2150499_44	COG	COG1669	Predicted nucleotidyltransferase MJ0435	NA
UHGV-2150499_44	Structural annotation	PF08780, PF18765, TIGR01987, COG1669, COG2445	NA	NA
UHGV-2150499_45	KOfam	K14059	int; integrase	NA
UHGV-2150499_45	PHROG	phrog_1	integrase	integration and excision
UHGV-2150499_45	UniRef90	UniRef90_W0FLR9	Site-specific recombinase XerD	NA
UHGV-2150499_45	eggNOG-mapper	641112.ACOK01000073_gene2860	Phage integrase family	NA
UHGV-2150499_45	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-2150499_45	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2150499_45	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2150499_45	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA