UHGV-2151077

Genome information

Genome length 37,078 bps

CDS count 50

Completeness 99.90% (high-quality)

geNomad score 0.9589

Prediction confidence Confident

Genome information
Genome ID	UHGV-2151077
vOTU ID	vOTU-014625
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029741\|Ga0245200_100045\|provirus_81148_118225
BioSample	SAMEA3449252
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9589
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.27
Jumbo phage	No

Genome content
Genome length	37,078 bps
GC content	56.38%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	88.59%
Average CDS length	659.82 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2151077_1	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-2151077_1	PHROG	phrog_1	integrase	integration and excision
UHGV-2151077_1	UniRef90	UniRef90_A0A354M3S1	Tyr recombinase domain-containing protein	NA
UHGV-2151077_1	eggNOG-mapper	679935.Alfi_3042	Belongs to the 'phage' integrase family	NA
UHGV-2151077_1	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-2151077_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2151077_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2151077_1	Structural annotation	PF00589, PF13102, PF17293, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-2151077_7	Structural annotation	PF11320	NA	NA
UHGV-2151077_8	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-2151077_8	UniRef90	UniRef90_G5H733	HTH cro/C1-type domain-containing protein	NA
UHGV-2151077_8	eggNOG-mapper	742725.HMPREF9450_00876	Transcriptional regulator	NA
UHGV-2151077_8	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-2151077_8	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-2151077_8	Structural annotation	PF00717, PF13560, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-2151077_9	KOfam	K09161	NA	NA
UHGV-2151077_9	PHROG	phrog_6084	NA	unknown function
UHGV-2151077_9	UniRef90	UniRef90_UPI0005709E19	YfbU family protein	NA
UHGV-2151077_9	eggNOG-mapper	1454202.PPBDW_120303___1	Belongs to the UPF0304 family	NA
UHGV-2151077_9	Pfam	PF03887	YfbU domain	YfbU
UHGV-2151077_9	COG	COG3013	NA	NA
UHGV-2151077_10	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-2151077_10	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-2151077_10	UniRef90	UniRef90_A0A7Y4Z694	Helix-turn-helix transcriptional regulator	NA
UHGV-2151077_10	eggNOG-mapper	553178.CAPGI0001_0495	DNA-binding helix-turn-helix protein	NA
UHGV-2151077_10	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2151077_10	Structural annotation	PF01381, MF_00535, NF041951, COG1396	NA	NA
UHGV-2151077_13	Pfam	PF05225	helix-turn-helix, Psq domain	HTH_psq
UHGV-2151077_15	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-2151077_15	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-2151077_15	UniRef90	UniRef90_A0A396LZV1	Phage antirepressor Ant	NA
UHGV-2151077_15	eggNOG-mapper	1121100.JCM6294_530	BRO family, N-terminal domain	NA
UHGV-2151077_15	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-2151077_15	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-2151077_15	COG	COG3617	Prophage antirepressor	NA
UHGV-2151077_15	Structural annotation	PF03374, PF02498, TIGR02681, COG3617, COG3645	NA	NA
UHGV-2151077_17	PHROG	phrog_21498	NA	unknown function
UHGV-2151077_17	UniRef90	UniRef90_A0A2N6Q6T2	Chromosome partitioning protein ParB	NA
UHGV-2151077_17	eggNOG-mapper	445970.ALIPUT_01611	DNA binding	NA
UHGV-2151077_17	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-2151077_18	PHROG	phrog_5781	NA	unknown function
UHGV-2151077_18	UniRef90	UniRef90_UPI00037C5E3A	NA	NA
UHGV-2151077_18	eggNOG-mapper	1123008.KB905702_gene2322	NA	NA
UHGV-2151077_18	Pfam	PF14359	NA	DUF4406
UHGV-2151077_18	COG	COG3613	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-2151077_19	PHROG	phrog_1408	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2151077_19	eggNOG-mapper	1123248.KB893315_gene2930	NA	NA
UHGV-2151077_19	COG	COG3935	DNA replication protein DnaD	NA
UHGV-2151077_21	eggNOG-mapper	547042.BACCOPRO_02134	NA	NA
UHGV-2151077_22	PHROG	phrog_874	NA	unknown function
UHGV-2151077_22	eggNOG-mapper	1121098.HMPREF1534_01095	NA	NA
UHGV-2151077_22	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-2151077_28	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-2151077_28	PHROG	phrog_2323	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2151077_28	UniRef90	UniRef90_UPI0009435056	HNH endonuclease	NA
UHGV-2151077_28	eggNOG-mapper	1268240.ATFI01000007_gene425	HNH endonuclease	NA
UHGV-2151077_28	Pfam	PF01844	HNH endonuclease	HNH
UHGV-2151077_28	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2151077_29	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-2151077_29	UniRef90	UniRef90_A0A412GGR3	Phage terminase small subunit P27 family	NA
UHGV-2151077_29	eggNOG-mapper	1268240.ATFI01000007_gene422	Phage terminase, small subunit	NA
UHGV-2151077_29	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-2151077_29	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-2151077_29	COG	COG3747	Phage terminase, small subunit	NA
UHGV-2151077_29	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-2151077_30	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2151077_30	UniRef90	UniRef90_A0A496C8I2	Terminase large subunit	NA
UHGV-2151077_30	eggNOG-mapper	1268240.ATFI01000007_gene421	Phage Terminase	NA
UHGV-2151077_30	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2151077_30	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2151077_30	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2151077_30	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-2151077_31	PHROG	phrog_12	portal protein	head and packaging
UHGV-2151077_31	UniRef90	UniRef90_E2N7Z9	Phage portal protein, HK97 family	NA
UHGV-2151077_31	eggNOG-mapper	1268240.ATFI01000007_gene420	Phage portal protein	NA
UHGV-2151077_31	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2151077_31	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-2151077_31	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2151077_31	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-2151077_32	KOfam	K06904	NA	NA
UHGV-2151077_32	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-2151077_32	UniRef90	UniRef90_E2N7Z8	Phage prohead protease, HK97 family	NA
UHGV-2151077_32	eggNOG-mapper	1268240.ATFI01000007_gene419	Caudovirus prohead serine protease	NA
UHGV-2151077_32	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-2151077_32	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-2151077_32	COG	COG3740	Phage head maturation protease	NA
UHGV-2151077_32	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-2151077_33	PHROG	phrog_617	major head protein	head and packaging
UHGV-2151077_33	UniRef90	UniRef90_A0A0P0G9H8	Phage capsid family protein	NA
UHGV-2151077_33	eggNOG-mapper	1268240.ATFI01000007_gene418	Phage capsid family	NA
UHGV-2151077_33	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2151077_33	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2151077_33	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2151077_33	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2151077_34	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-2151077_34	UniRef90	UniRef90_A0A412XUX3	Phage gp6-like head-tail connector protein	NA
UHGV-2151077_34	eggNOG-mapper	1347393.HG726026_gene2615	Phage gp6-like head-tail connector protein	NA
UHGV-2151077_34	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-2151077_34	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-2151077_34	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-2151077_35	UniRef90	UniRef90_UPI0004AEE794	phage head closure protein	NA
UHGV-2151077_35	eggNOG-mapper	1347393.HG726026_gene2616	Phage head-tail joining protein	NA
UHGV-2151077_35	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-2151077_35	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2151077_36	eggNOG-mapper	1268240.ATFI01000007_gene415	NA	NA
UHGV-2151077_36	Structural annotation	TIGR01725	NA	NA
UHGV-2151077_37	UniRef90	UniRef90_A0A412GGS1	NA	NA
UHGV-2151077_37	eggNOG-mapper	1347393.HG726026_gene2618	NA	NA
UHGV-2151077_37	Structural annotation	PF11367, COG5003	NA	NA
UHGV-2151077_38	PHROG	phrog_1407	major tail protein	tail
UHGV-2151077_38	UniRef90	UniRef90_UPI001913A485	phage tail tube protein	NA
UHGV-2151077_38	eggNOG-mapper	1347393.HG726026_gene2619	Phage tail tube protein	NA
UHGV-2151077_38	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2151077_39	eggNOG-mapper	1268240.ATFI01000007_gene412	NA	NA
UHGV-2151077_40	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-2151077_40	PHROG	phrog_2335	tail length tape measure protein	tail
UHGV-2151077_40	UniRef90	UniRef90_UPI001F350F68	tape measure protein	NA
UHGV-2151077_40	eggNOG-mapper	1347393.HG726026_gene2622	tape measure	NA
UHGV-2151077_40	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-2151077_40	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-2151077_40	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-2151077_40	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-2151077_41	PHROG	phrog_30639	NA	unknown function
UHGV-2151077_41	eggNOG-mapper	411901.BACCAC_00723	NA	NA
UHGV-2151077_41	Structural annotation	PF14594, TIGR03361, COG4379	NA	NA
UHGV-2151077_42	PHROG	phrog_1699	long tail fiber protein distal subunit	tail
UHGV-2151077_42	eggNOG-mapper	947842.F1BUK3_9VIRU	N-acetylmuramoyl-L-alanine amidase activity	NA
UHGV-2151077_42	Pfam	PF21446	Long-tail fiber proximal subunit, C-terminal domain	Gp34_C
UHGV-2151077_48	UniRef90	UniRef90_UPI001E535CC6	phage holin family protein	NA
UHGV-2151077_48	eggNOG-mapper	742726.HMPREF9448_01212	NA	NA
UHGV-2151077_48	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-2151077_48	Structural annotation	PF05105, COG4824	NA	NA
UHGV-2151077_49	PHROG	phrog_894	endolysin	lysis
UHGV-2151077_49	UniRef90	UniRef90_A0A8F0WFB9	Putative peptidase/signaling protein	NA
UHGV-2151077_49	eggNOG-mapper	1236514.BAKL01000034_gene2910	NA	NA
UHGV-2151077_50	Pfam	PF20647	NA	DUF6808
UHGV-2151077_50	Structural annotation	PF20647	NA	NA