UHGV-2151318

Genome information

Genome length 33,986 bps

CDS count 50

Completeness 81.92% (medium-quality)

geNomad score 0.9750

Prediction confidence Confident

Genome information
Genome ID	UHGV-2151318
vOTU ID	vOTU-018618
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029741\|Ga0245200_100476\|provirus_3_33988
BioSample	SAMEA3449252
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	81.92% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9750
Virus hallmark genes (geNomad)	14
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	47.84
Jumbo phage	No

Genome content
Genome length	33,986 bps
GC content	58.02%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	92.20%
Average CDS length	629.82 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2151318_1	eggNOG-mapper	665956.HMPREF1032_03921	NA	NA
UHGV-2151318_3	KOfam	K14059	int; integrase	NA
UHGV-2151318_3	PHROG	phrog_1	integrase	integration and excision
UHGV-2151318_3	UniRef90	UniRef90_G9RTP6	Tyr recombinase domain-containing protein	NA
UHGV-2151318_3	eggNOG-mapper	665956.HMPREF1032_02930	Phage integrase, N-terminal SAM-like domain	NA
UHGV-2151318_3	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-2151318_3	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2151318_3	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2151318_3	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-2151318_4	PHROG	phrog_9116	tail protein	tail
UHGV-2151318_4	UniRef90	UniRef90_UPI001966D481	tail fiber protein	NA
UHGV-2151318_4	eggNOG-mapper	665956.HMPREF1032_02700	PFAM Tail Collar domain protein	NA
UHGV-2151318_4	Pfam	PF07484	Phage Tail Collar Domain	Collar
UHGV-2151318_4	COG	COG4675	Phage tail collar domain	NA
UHGV-2151318_6	PHROG	phrog_26795	NA	unknown function
UHGV-2151318_6	UniRef90	UniRef90_A0A5J6T4K8	Minor tail protein	NA
UHGV-2151318_6	eggNOG-mapper	1382315.JPOI01000001_gene271	NA	NA
UHGV-2151318_6	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-2151318_7	UniRef90	UniRef90_A0A3D0W045	Fibronectin type-III domain-containing protein	NA
UHGV-2151318_7	eggNOG-mapper	1161901.I1TLF2_9CAUD	NA	NA
UHGV-2151318_7	Structural annotation	PF02010, PF06995, MF_04116, NF010681, COG3401, COG3499	NA	NA
UHGV-2151318_8	PHROG	phrog_23464	NA	unknown function
UHGV-2151318_8	eggNOG-mapper	1462526.BN990_01862	Phage tail tape measure protein TP901	NA
UHGV-2151318_8	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-2151318_8	Structural annotation	PF20155, TIGR01760, COG5280	NA	NA
UHGV-2151318_9	PHROG	phrog_706	NA	unknown function
UHGV-2151318_9	UniRef90	UniRef90_A0A1I0GR35	Bacteriophage Gp15 protein	NA
UHGV-2151318_9	eggNOG-mapper	658655.HMPREF0988_02553	Bacteriophage Gp15 protein	NA
UHGV-2151318_9	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-2151318_11	PHROG	phrog_820	major tail protein	tail
UHGV-2151318_11	UniRef90	UniRef90_I3DXZ0	Ig domain-containing protein group 2 domain-containing protein	NA
UHGV-2151318_11	eggNOG-mapper	997296.PB1_16179	domain, Protein	NA
UHGV-2151318_11	COG	COG5492	NA	NA
UHGV-2151318_11	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2151318_12	PHROG	phrog_3266	tail completion	connector
UHGV-2151318_12	eggNOG-mapper	1160721.RBI_II00533	NA	NA
UHGV-2151318_12	Structural annotation	PF20765	NA	NA
UHGV-2151318_13	UniRef90	UniRef90_UPI0019D0AD4B	minor capsid protein	NA
UHGV-2151318_13	eggNOG-mapper	936375.HMPREF1152_1079	NA	NA
UHGV-2151318_13	Structural annotation	PF11114	NA	NA
UHGV-2151318_15	PHROG	phrog_541	head-tail adaptor	connector
UHGV-2151318_15	eggNOG-mapper	1120998.AUFC01000030_gene2237	NA	NA
UHGV-2151318_15	Pfam	PF13262	NA	DUF4054
UHGV-2151318_16	PHROG	phrog_10541	NA	unknown function
UHGV-2151318_16	UniRef90	UniRef90_A0A0D8J3S8	Rho_N domain-containing protein	NA
UHGV-2151318_16	Pfam	PF07498	Rho termination factor, N-terminal domain	Rho_N
UHGV-2151318_16	COG	COG5492	NA	NA
UHGV-2151318_16	Structural annotation	PF09124	NA	NA
UHGV-2151318_17	PHROG	phrog_422	major head protein	head and packaging
UHGV-2151318_17	eggNOG-mapper	693746.OBV_18090	NA	NA
UHGV-2151318_17	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-2151318_18	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-2151318_18	UniRef90	UniRef90_A0A4R1QTK7	Minor structural protein GP20	NA
UHGV-2151318_18	eggNOG-mapper	411471.SUBVAR_06994	Phage minor structural protein GP20	NA
UHGV-2151318_18	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-2151318_18	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-2151318_20	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2151318_20	UniRef90	UniRef90_UPI0006814CA4	phage minor capsid protein	NA
UHGV-2151318_20	eggNOG-mapper	411471.SUBVAR_06995	NA	NA
UHGV-2151318_20	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2151318_20	COG	COG2369	NA	NA
UHGV-2151318_20	Structural annotation	PF06152	NA	NA
UHGV-2151318_21	PHROG	phrog_533	portal protein	head and packaging
UHGV-2151318_21	UniRef90	UniRef90_D1PRG7	Putative phage minor capsid protein	NA
UHGV-2151318_21	eggNOG-mapper	411471.SUBVAR_06996	NA	NA
UHGV-2151318_21	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2151318_23	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2151318_23	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-2151318_23	UniRef90	UniRef90_A0A0D8J425	Terminase	NA
UHGV-2151318_23	eggNOG-mapper	411471.SUBVAR_06998	Phage terminase, large subunit, PBSX family	NA
UHGV-2151318_23	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-2151318_23	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-2151318_23	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2151318_23	COG	COG1783	Phage terminase large subunit	NA
UHGV-2151318_23	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2151318_24	UniRef90	UniRef90_A0A1Y4TKH5	HTH_Tnp_1_2 domain-containing protein	NA
UHGV-2151318_26	KOfam	K02601	nusG; transcription termination/antitermination protein NusG	NA
UHGV-2151318_26	PHROG	phrog_6386	transcription antiterminator	transcription regulation
UHGV-2151318_26	UniRef90	UniRef90_G9RN11	NGN domain-containing protein	NA
UHGV-2151318_26	eggNOG-mapper	665956.HMPREF1032_01630	Transcription termination factor nusG	NA
UHGV-2151318_26	Pfam	PF02357	Transcription termination factor nusG	NusG
UHGV-2151318_26	COG	COG0250	Transcription termination/antitermination protein NusG	NA
UHGV-2151318_26	Structural annotation	PF02357, MF_00951, NF033641, COG0250	NA	NA
UHGV-2151318_27	PHROG	phrog_426	terminase small subunit	head and packaging
UHGV-2151318_27	UniRef90	UniRef90_UPI000AA50A3B	NA	NA
UHGV-2151318_27	eggNOG-mapper	665956.HMPREF1032_02960	NA	NA
UHGV-2151318_27	Pfam	PF11985	Bacteriophage Mu, Gp27	Phage_Mu_Gp27
UHGV-2151318_27	Structural annotation	PF11985	NA	NA
UHGV-2151318_28	PHROG	phrog_25462	NA	unknown function
UHGV-2151318_28	UniRef90	UniRef90_A0A349GP70	Type VI secretion protein	NA
UHGV-2151318_28	eggNOG-mapper	665956.HMPREF1032_01632	NA	NA
UHGV-2151318_28	Structural annotation	PF01638, MF_01819, NF002926, COG1733	NA	NA
UHGV-2151318_29	UniRef90	UniRef90_A0A372V349	NA	NA
UHGV-2151318_29	eggNOG-mapper	665956.HMPREF1032_01633	NA	NA
UHGV-2151318_30	PHROG	phrog_532	late transcriptional activator	transcription regulation
UHGV-2151318_30	UniRef90	UniRef90_G9RN15	Mor domain-containing protein	NA
UHGV-2151318_30	eggNOG-mapper	665956.HMPREF1032_01634	Mor transcription activator family	NA
UHGV-2151318_30	Pfam	PF08765	Mor transcription activator family	Mor
UHGV-2151318_30	COG	COG5566	Transcriptional regulator, middle operon regulator (Mor) family	NA
UHGV-2151318_31	PHROG	phrog_286	NA	unknown function
UHGV-2151318_31	UniRef90	UniRef90_UPI000A7FF2BA	NA	NA
UHGV-2151318_31	eggNOG-mapper	665956.HMPREF1032_01635	NA	NA
UHGV-2151318_31	Pfam	PF06252	Bacteriophage Mu, GemA protein	GemA
UHGV-2151318_31	Structural annotation	PF06252	NA	NA
UHGV-2151318_32	PHROG	phrog_491	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-2151318_32	UniRef90	UniRef90_A0A6N3F7T2	Bacteriophage Mu Gam like protein	NA
UHGV-2151318_32	eggNOG-mapper	665956.HMPREF1032_01636	Bacteriophage Mu Gam like protein	NA
UHGV-2151318_32	Pfam	PF07352	Bacteriophage Mu Gam like protein	Phage_Mu_Gam
UHGV-2151318_32	COG	COG4396	Mu-like prophage host-nuclease inhibitor protein Gam	NA
UHGV-2151318_32	Structural annotation	PF07352, COG4396	NA	NA
UHGV-2151318_34	Structural annotation	PF06657	NA	NA
UHGV-2151318_37	UniRef90	UniRef90_UPI001967CCF1	helix-turn-helix domain-containing protein	NA
UHGV-2151318_37	Structural annotation	PF04218, NF040595, COG1710	NA	NA
UHGV-2151318_38	PHROG	phrog_2717	NA	unknown function
UHGV-2151318_38	eggNOG-mapper	665956.HMPREF1032_01643	NA	NA
UHGV-2151318_40	KOfam	K07132	MuB; ATP-dependent target DNA activator	NA
UHGV-2151318_40	PHROG	phrog_296	DNA transposition protein	integration and excision
UHGV-2151318_40	UniRef90	UniRef90_A0A6N3F8E0	HTH cro/C1-type domain-containing protein	NA
UHGV-2151318_40	eggNOG-mapper	665956.HMPREF1032_02978	AAA domain	NA
UHGV-2151318_40	Pfam	PF13401	AAA domain	AAA_22
UHGV-2151318_40	COG	COG2842	Bacteriophage DNA transposition protein, AAA+ family ATPase	NA
UHGV-2151318_41	PHROG	phrog_310	transposase	integration and excision
UHGV-2151318_41	UniRef90	UniRef90_D1PRI1	Mu transposase domain protein	NA
UHGV-2151318_41	eggNOG-mapper	665956.HMPREF1032_02979	Mu transposase, C-terminal	NA
UHGV-2151318_41	PADLOC	TnsB_0_V-K	TnsB_0_V-K	CRISPR-CAS
UHGV-2151318_41	Pfam	PF09039	Mu DNA binding, I gamma subdomain	HTH_Tnp_Mu_2
UHGV-2151318_41	Pfam	PF02914	Bacteriophage Mu transposase	DDE_2
UHGV-2151318_41	Pfam	PF09299	Mu transposase, C-terminal	Mu-transpos_C
UHGV-2151318_41	COG	COG2801	Transposase InsO and inactivated derivatives	NA
UHGV-2151318_41	Structural annotation	PF02914, PF09039, PF09299, PF21531, NF033594, TIGR01764, COG3316, COG3311	NA	NA
UHGV-2151318_44	PHROG	phrog_585	NA	unknown function
UHGV-2151318_44	UniRef90	UniRef90_UPI001967E246	NA	NA
UHGV-2151318_44	eggNOG-mapper	1121105.ATXL01000006_gene1354	NA	NA
UHGV-2151318_44	Pfam	PF10711	NA	DUF2513
UHGV-2151318_44	Structural annotation	PF10711, TIGR04176, COG1695	NA	NA
UHGV-2151318_49	UniRef90	UniRef90_UPI0019671B18	transcriptional regulator	NA
UHGV-2151318_49	eggNOG-mapper	1430331.EP10_02425	NA	NA
UHGV-2151318_49	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-2151318_49	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-2151318_50	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-2151318_50	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-2151318_50	UniRef90	UniRef90_UPI00196875A4	LexA family transcriptional regulator	NA
UHGV-2151318_50	eggNOG-mapper	665956.HMPREF1032_04076	Peptidase S24-like	NA
UHGV-2151318_50	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2151318_50	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-2151318_50	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2151318_50	Structural annotation	PF00717, PF01381, MF_00015, NF041951, NF007621, COG2932	NA	NA