UHGV-2151678

Genome information

Genome length 33,027 bps

CDS count 49

Completeness 91.93% (high-quality)

geNomad score 0.9750

Prediction confidence Confident

Genome information
Genome ID	UHGV-2151678
vOTU ID	vOTU-072605
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029756\|Ga0242840_100027\|provirus_16908_49934
BioSample	SAMN05545088
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	91.93% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	24
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9750
Virus hallmark genes (geNomad)	15
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	73.12
Jumbo phage	No

Genome content
Genome length	33,027 bps
GC content	48.73%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	92.05%
Average CDS length	623.08 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2151678_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-2151678_1	PHROG	phrog_95	integrase	integration and excision
UHGV-2151678_1	UniRef90	UniRef90_UPI0016482ABA	recombinase family protein	NA
UHGV-2151678_1	eggNOG-mapper	706434.HMPREF9429_00560	overlaps another CDS with the same product name	NA
UHGV-2151678_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-2151678_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-2151678_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-2151678_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2151678_1	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-2151678_2	UniRef90	UniRef90_A0A0K2LAW2	DNA polymerase III subunit alpha	NA
UHGV-2151678_2	eggNOG-mapper	1123359.AUIQ01000036_gene1294	3' exoribonuclease, RNase T-like	NA
UHGV-2151678_2	Pfam	PF00929	Exonuclease	RNase_T
UHGV-2151678_2	COG	COG0847	DNA polymerase III, epsilon subunit or related 3'-5' exonuclease	NA
UHGV-2151678_2	Structural annotation	PF00929, MF_00157, NF004844, COG0847	NA	NA
UHGV-2151678_3	PHROG	phrog_87	metallo-protease	other
UHGV-2151678_3	UniRef90	UniRef90_UPI0016459767	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-2151678_3	eggNOG-mapper	1123250.KB908434_gene7	Zn peptidase	NA
UHGV-2151678_3	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-2151678_3	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-2151678_3	Structural annotation	PF06114, COG2856	NA	NA
UHGV-2151678_4	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-2151678_4	UniRef90	UniRef90_A0A8D5A0Z5	HTH cro/C1-type domain-containing protein	NA
UHGV-2151678_4	eggNOG-mapper	1158614.I592_02464	Peptidase S24-like	NA
UHGV-2151678_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2151678_4	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-2151678_4	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-2151678_5	UniRef90	UniRef90_A0A8E4BPM2	HTH cro/C1-type domain-containing protein	NA
UHGV-2151678_5	eggNOG-mapper	387344.LVIS_1596	Helix-turn-helix XRE-family like proteins	NA
UHGV-2151678_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2151678_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2151678_5	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-2151678_7	PHROG	phrog_25045	NA	unknown function
UHGV-2151678_7	UniRef90	UniRef90_F9MMK8	LysM domain protein	NA
UHGV-2151678_7	eggNOG-mapper	568816.Acin_1254	LysM domain	NA
UHGV-2151678_7	Pfam	PF01476	LysM domain	LysM
UHGV-2151678_7	COG	COG1388	LysM repeat	NA
UHGV-2151678_7	Structural annotation	MF_02014, NF010723, COG1388	NA	NA
UHGV-2151678_9	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-2151678_9	UniRef90	UniRef90_S7HTF0	Phage-type endonuclease	NA
UHGV-2151678_9	eggNOG-mapper	1273103.NM10_01174	YqaJ viral recombinase family protein	NA
UHGV-2151678_9	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-2151678_9	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-2151678_9	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-2151678_9	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-2151678_10	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-2151678_10	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2151678_10	UniRef90	UniRef90_A0A316M5N2	Recombinase RecT	NA
UHGV-2151678_10	eggNOG-mapper	1273103.NM10_01169	Recombinase, phage RecT family	NA
UHGV-2151678_10	Pfam	PF03837	RecT family	RecT
UHGV-2151678_10	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-2151678_10	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-2151678_10	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-2151678_12	PHROG	phrog_8489	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-2151678_12	UniRef90	UniRef90_A0A6A4UXR4	Phage replication initiation	NA
UHGV-2151678_12	eggNOG-mapper	1507.HMPREF0262_00303	DnaD domain protein	NA
UHGV-2151678_12	COG	COG3935	DNA replication protein DnaD	NA
UHGV-2151678_12	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-2151678_13	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-2151678_13	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-2151678_13	UniRef90	UniRef90_UPI001D07AA17	DnaA/Hda family protein	NA
UHGV-2151678_13	eggNOG-mapper	1111454.HMPREF1250_0279	DNA replication protein	NA
UHGV-2151678_13	COG	COG1484	DNA replication protein DnaC	NA
UHGV-2151678_13	Structural annotation	PF01695, MF_00377, NF005378, COG1484	NA	NA
UHGV-2151678_14	PHROG	phrog_6568	NA	unknown function
UHGV-2151678_17	PHROG	phrog_236	nucleotide kinase	other
UHGV-2151678_17	UniRef90	UniRef90_UPI001F0F7AF9	NA	NA
UHGV-2151678_17	eggNOG-mapper	706434.HMPREF9429_00542	NA	NA
UHGV-2151678_17	Pfam	PF11753	NA	DUF3310
UHGV-2151678_17	Structural annotation	PF11753	NA	NA
UHGV-2151678_18	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-2151678_18	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2151678_18	UniRef90	UniRef90_A0A848EVG3	Single-stranded DNA-binding protein	NA
UHGV-2151678_18	eggNOG-mapper	397288.C806_03901	Single-strand binding protein family	NA
UHGV-2151678_18	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2151678_18	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-2151678_18	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2151678_18	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-2151678_18	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-2151678_20	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-2151678_20	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2151678_20	UniRef90	UniRef90_UPI001D082351	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-2151678_20	eggNOG-mapper	411459.RUMOBE_01038	COG COG4570 Holliday junction resolvase	NA
UHGV-2151678_20	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-2151678_20	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-2151678_20	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-2151678_21	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2151678_21	UniRef90	UniRef90_A0A346B157	RNA polymerase subunit sigma-70	NA
UHGV-2151678_21	eggNOG-mapper	1111454.HMPREF1250_0269	NA	NA
UHGV-2151678_21	Structural annotation	PF08281, TIGR01636, COG1191	NA	NA
UHGV-2151678_22	PHROG	phrog_1066	NA	unknown function
UHGV-2151678_22	eggNOG-mapper	1232428.CAVO010000003_gene1013	NA	NA
UHGV-2151678_22	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-2151678_23	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2151678_23	UniRef90	UniRef90_A0A8D4UU77	Terminase	NA
UHGV-2151678_23	eggNOG-mapper	1232428.CAVO010000003_gene1012	Phage Terminase	NA
UHGV-2151678_23	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2151678_23	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2151678_23	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2151678_23	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-2151678_24	PHROG	phrog_12	portal protein	head and packaging
UHGV-2151678_24	UniRef90	UniRef90_UPI0016454394	phage portal protein	NA
UHGV-2151678_24	eggNOG-mapper	1232428.CAVO010000003_gene1011	Phage portal protein	NA
UHGV-2151678_24	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2151678_24	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-2151678_24	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2151678_24	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-2151678_25	KOfam	K06904	NA	NA
UHGV-2151678_25	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-2151678_25	UniRef90	UniRef90_UPI00164975A0	HK97 family phage prohead protease	NA
UHGV-2151678_25	eggNOG-mapper	1232428.CAVO010000003_gene1010	Caudovirus prohead serine protease	NA
UHGV-2151678_25	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-2151678_25	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-2151678_25	COG	COG3740	Phage head maturation protease	NA
UHGV-2151678_25	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-2151678_26	PHROG	phrog_10	major head protein	head and packaging
UHGV-2151678_26	UniRef90	UniRef90_UPI001648ED55	phage major capsid protein	NA
UHGV-2151678_26	eggNOG-mapper	1341151.ASZU01000004_gene260	Phage capsid family	NA
UHGV-2151678_26	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2151678_26	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2151678_26	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2151678_26	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2151678_27	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-2151678_27	UniRef90	UniRef90_UPI001647B235	head-tail connector protein	NA
UHGV-2151678_27	eggNOG-mapper	935948.KE386495_gene1332	Phage gp6-like head-tail connector protein	NA
UHGV-2151678_27	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-2151678_27	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-2151678_27	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-2151678_28	PHROG	phrog_25	head closure Hc1	connector
UHGV-2151678_28	UniRef90	UniRef90_UPI001648A1FB	phage head closure protein	NA
UHGV-2151678_28	eggNOG-mapper	1232428.CAVO010000003_gene1007	Phage head-tail joining protein	NA
UHGV-2151678_28	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-2151678_28	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-2151678_28	COG	COG5614	Phage head-tail adaptor	NA
UHGV-2151678_28	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2151678_29	UniRef90	UniRef90_UPI001645C731	HK97 gp10 family phage protein	NA
UHGV-2151678_29	eggNOG-mapper	1232428.CAVO010000003_gene1006	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-2151678_29	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2151678_29	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-2151678_30	PHROG	phrog_525	NA	unknown function
UHGV-2151678_30	eggNOG-mapper	1408324.JNJK01000006_gene1386	NA	NA
UHGV-2151678_30	Pfam	PF20765	NA	DUF6838
UHGV-2151678_31	PHROG	phrog_1480	tail sheath	tail
UHGV-2151678_31	UniRef90	UniRef90_UPI0016491346	phage tail sheath subtilisin-like domain-containing protein	NA
UHGV-2151678_31	eggNOG-mapper	1232428.CAVO010000003_gene1004	Phage tail sheath C-terminal domain	NA
UHGV-2151678_31	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-2151678_31	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-2151678_31	Structural annotation	PF10758, COG3497	NA	NA
UHGV-2151678_32	PHROG	phrog_365	tail protein	tail
UHGV-2151678_32	UniRef90	UniRef90_UPI001645E4E9	phage tail tube protein	NA
UHGV-2151678_32	eggNOG-mapper	1232428.CAVO010000003_gene1003	Phage tail tube protein	NA
UHGV-2151678_32	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-2151678_32	Structural annotation	PF09393, TIGR02241, COG3498	NA	NA
UHGV-2151678_33	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-2151678_33	UniRef90	UniRef90_UPI001645A435	XkdN-like protein	NA
UHGV-2151678_33	eggNOG-mapper	1232428.CAVO010000003_gene1002	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-2151678_33	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-2151678_33	Structural annotation	PF08890	NA	NA
UHGV-2151678_35	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-2151678_35	UniRef90	UniRef90_UPI001645A310	phage tail tape measure protein	NA
UHGV-2151678_35	eggNOG-mapper	1232428.CAVO010000003_gene1001	Phage-related minor tail protein	NA
UHGV-2151678_35	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-2151678_35	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-2151678_35	COG	COG5283	Phage-related tail protein	NA
UHGV-2151678_35	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-2151678_36	PHROG	phrog_5184	NA	unknown function
UHGV-2151678_36	UniRef90	UniRef90_I0GWS0	Phage related protein	NA
UHGV-2151678_36	eggNOG-mapper	1232428.CAVO010000003_gene1000	LysM domain	NA
UHGV-2151678_36	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-2151678_36	Structural annotation	PF19266, TIGR02126, COG3499	NA	NA
UHGV-2151678_37	PHROG	phrog_400	tail protein	tail
UHGV-2151678_37	UniRef90	UniRef90_A0A848BXY8	Lytic transglycosylase domain-containing protein	NA
UHGV-2151678_37	eggNOG-mapper	1232428.CAVO010000003_gene999	NLP P60 protein	NA
UHGV-2151678_37	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-2151678_37	Structural annotation	PF14594, PF00877, NF033848, NF008096, COG3500	NA	NA
UHGV-2151678_38	PHROG	phrog_579	NA	unknown function
UHGV-2151678_38	UniRef90	UniRef90_UPI0016483798	NA	NA
UHGV-2151678_38	eggNOG-mapper	1232428.CAVO010000003_gene998	NA	NA
UHGV-2151678_38	Pfam	PF10844	NA	DUF2577
UHGV-2151678_38	Structural annotation	PF10844, TIGR00523	NA	NA
UHGV-2151678_39	PHROG	phrog_120	baseplate protein	tail
UHGV-2151678_39	UniRef90	UniRef90_UPI001646EAB8	NA	NA
UHGV-2151678_39	eggNOG-mapper	1232428.CAVO010000003_gene997	NA	NA
UHGV-2151678_39	Pfam	PF10934	NA	DUF2634
UHGV-2151678_39	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-2151678_39	Structural annotation	PF10934, MF_02010, TIGR03357, COG3628	NA	NA
UHGV-2151678_40	PHROG	phrog_6	baseplate protein	tail
UHGV-2151678_40	UniRef90	UniRef90_UPI0016450683	baseplate J/gp47 family protein	NA
UHGV-2151678_40	eggNOG-mapper	1232428.CAVO010000003_gene996	Baseplate J-like protein	NA
UHGV-2151678_40	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-2151678_40	COG	COG3299	NA	NA
UHGV-2151678_40	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-2151678_41	PHROG	phrog_521	tail protein	tail
UHGV-2151678_41	UniRef90	UniRef90_A0A848EVX3	NA	NA
UHGV-2151678_41	eggNOG-mapper	1111454.HMPREF1250_0200	NA	NA
UHGV-2151678_41	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-2151678_41	COG	COG3778	NA	NA
UHGV-2151678_41	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-2151678_42	PHROG	phrog_7037	tail fiber protein	tail
UHGV-2151678_42	UniRef90	UniRef90_UPI000486D8B9	phage tail protein	NA
UHGV-2151678_42	eggNOG-mapper	1273103.NM10_08099	NA	NA
UHGV-2151678_42	Structural annotation	PF12571	NA	NA
UHGV-2151678_43	KOfam	K14059	int; integrase	NA
UHGV-2151678_43	PHROG	phrog_1	integrase	integration and excision
UHGV-2151678_43	UniRef90	UniRef90_A0A1G5VJA4	Site-specific recombinase XerD	NA
UHGV-2151678_43	eggNOG-mapper	1273103.NM10_01678	Phage integrase family	NA
UHGV-2151678_43	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2151678_43	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-2151678_43	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-2151678_44	eggNOG-mapper	1200557.JHWV01000001_gene254	NA	NA
UHGV-2151678_46	PHROG	phrog_4257	NA	unknown function
UHGV-2151678_46	eggNOG-mapper	1005705.HMPREF9967_1056	NA	NA
UHGV-2151678_47	eggNOG-mapper	568816.Acin_1951	NA	NA
UHGV-2151678_48	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2151678_48	PHROG	phrog_435	endolysin	lysis
UHGV-2151678_48	UniRef90	UniRef90_UPI000409D653	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2151678_48	eggNOG-mapper	568816.Acin_1320	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2151678_48	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-2151678_48	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2151678_48	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-2151678_49	PHROG	phrog_18996	NA	unknown function
UHGV-2151678_49	eggNOG-mapper	1273103.NM10_01746	NA	NA