UHGV-2151806

Genome information

vOTU vOTU-020430

Genome length 43,079 bps

CDS count 64

Completeness 70.31% (medium-quality)

geNomad score 0.9595

Prediction confidence Confident

Genome information
Genome ID	UHGV-2151806
vOTU ID	vOTU-020430
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029762\|Ga0245183_100169\|provirus_59980_106593
BioSample	SAMEA3449235
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	70.31% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	18
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9595
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	30.08
Jumbo phage	No

Genome content
Genome length	43,079 bps
GC content	38.84%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	64
CDS density	90.02%
Average CDS length	608.20 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2151806_1	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2151806_1	PHROG	phrog_670	endolysin	lysis
UHGV-2151806_1	UniRef90	UniRef90_A0A352SK06	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-2151806_1	eggNOG-mapper	1042156.CXIVA_01560	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-2151806_1	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-2151806_1	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-2151806_1	Structural annotation	PF01510, PF08239, MF_04111, NF008758, COG5632	NA	NA
UHGV-2151806_2	PHROG	phrog_199	holin	lysis
UHGV-2151806_2	UniRef90	UniRef90_A0A416C5W4	Holin	NA
UHGV-2151806_2	eggNOG-mapper	742740.HMPREF9474_02333	Bacteriophage holin family	NA
UHGV-2151806_2	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-2151806_2	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-2151806_2	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-2151806_2	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-2151806_4	Pfam	PF03406	Phage tail fibre repeat	Phage_fiber_2
UHGV-2151806_6	eggNOG-mapper	679935.Alfi_0763	NA	NA
UHGV-2151806_7	PHROG	phrog_7037	tail fiber protein	tail
UHGV-2151806_7	UniRef90	UniRef90_UPI00164E56EF	phage tail protein	NA
UHGV-2151806_7	eggNOG-mapper	572544.Ilyop_1021	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-2151806_7	Pfam	PF12571	Phage tail-collar fibre protein	DUF3751
UHGV-2151806_7	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-2151806_8	PHROG	phrog_48	tail protein	tail
UHGV-2151806_8	UniRef90	UniRef90_A0A1C5ZGF3	Bacteriophage P2-related tail formation protein	NA
UHGV-2151806_8	eggNOG-mapper	1157490.EL26_01695	Tail protein	NA
UHGV-2151806_8	Pfam	PF09684	Phage tail protein (Tail_P2_I)	Tail_P2_I
UHGV-2151806_8	NCBIFam	TIGR01634.1	phage tail protein I	NA
UHGV-2151806_8	COG	COG4385	Bacteriophage P2-related tail formation protein	NA
UHGV-2151806_8	Structural annotation	PF09684, TIGR01634, COG4385	NA	NA
UHGV-2151806_9	PHROG	phrog_6	baseplate protein	tail
UHGV-2151806_9	UniRef90	UniRef90_A0A371J2V5	Baseplate J/gp47 family protein	NA
UHGV-2151806_9	eggNOG-mapper	411470.RUMGNA_00246	NA	NA
UHGV-2151806_9	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-2151806_9	COG	COG3948	Phage-related baseplate assembly protein	NA
UHGV-2151806_9	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3948	NA	NA
UHGV-2151806_10	UniRef90	UniRef90_A0A329MGU2	GPW_gp25 domain-containing protein	NA
UHGV-2151806_10	eggNOG-mapper	1235835.C814_03449	GPW Gp25 family protein	NA
UHGV-2151806_10	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-2151806_11	PHROG	phrog_76	tail protein	tail
UHGV-2151806_11	UniRef90	UniRef90_A0A1M7LUF6	Phage P2 GpU	NA
UHGV-2151806_11	eggNOG-mapper	657322.FPR_27050	Phage P2 GpU	NA
UHGV-2151806_11	Pfam	PF06995	Phage P2 GpU	Phage_P2_GpU
UHGV-2151806_11	COG	COG3499	NA	NA
UHGV-2151806_13	KOfam	K06905	NA	NA
UHGV-2151806_13	PHROG	phrog_52	tail protein	tail
UHGV-2151806_13	UniRef90	UniRef90_UPI001EE59FE1	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-2151806_13	eggNOG-mapper	478749.BRYFOR_07549	COG3500 Phage protein D	NA
UHGV-2151806_13	COG	COG3500	NA	NA
UHGV-2151806_13	Structural annotation	PF05954, NF033848, COG3500	NA	NA
UHGV-2151806_14	PHROG	phrog_46	tail protein	tail
UHGV-2151806_14	UniRef90	UniRef90_A0A3P6KVL3	Phage tail protein gpX	NA
UHGV-2151806_14	eggNOG-mapper	411470.RUMGNA_00241	Phage Tail Protein X	NA
UHGV-2151806_14	Pfam	PF05489	Phage Tail Protein X	Phage_tail_X
UHGV-2151806_14	COG	COG5004	P2-like prophage tail protein X	NA
UHGV-2151806_14	Structural annotation	PF05489, TIGR02899, COG5004	NA	NA
UHGV-2151806_15	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-2151806_15	UniRef90	UniRef90_A0A7U6KDP8	Phage tail length tape-measure protein	NA
UHGV-2151806_15	eggNOG-mapper	33035.JPJF01000033_gene2265	Phage-related minor tail protein	NA
UHGV-2151806_15	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-2151806_15	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-2151806_15	COG	COG5283	Phage-related tail protein	NA
UHGV-2151806_15	Structural annotation	PF10145, PF12026, TIGR01760, COG5280	NA	NA
UHGV-2151806_16	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-2151806_16	COG	COG5283	Phage-related tail protein	NA
UHGV-2151806_17	PHROG	phrog_3140	tail assembly chaperone	tail
UHGV-2151806_17	eggNOG-mapper	693746.OBV_22800	Phage tail assembly chaperone proteins, E, or 41 or 14	NA
UHGV-2151806_17	Structural annotation	PF10109	NA	NA
UHGV-2151806_18	KOfam	K06908	NA	NA
UHGV-2151806_18	PHROG	phrog_55	head closure	connector
UHGV-2151806_18	UniRef90	UniRef90_A0A7U6KDK0	Phage major tail tube protein	NA
UHGV-2151806_18	eggNOG-mapper	411470.RUMGNA_00237	Phage tail tube protein FII	NA
UHGV-2151806_18	Pfam	PF04985	Phage tail tube protein FII	Phage_tube
UHGV-2151806_18	COG	COG3498	Phage tail tube protein FII	NA
UHGV-2151806_18	Structural annotation	PF04985, TIGR01611, COG3498	NA	NA
UHGV-2151806_19	KOfam	K06907	NA	NA
UHGV-2151806_19	PHROG	phrog_23	tail sheath	tail
UHGV-2151806_19	UniRef90	UniRef90_A0A6L9HMS7	Phage tail sheath family protein	NA
UHGV-2151806_19	eggNOG-mapper	887325.HMPREF0381_0393	COG3497 Phage tail sheath protein FI	NA
UHGV-2151806_19	COG	COG3497	Phage tail sheath protein FI	NA
UHGV-2151806_19	Structural annotation	PF10758, TIGR03355, COG3497	NA	NA
UHGV-2151806_20	PHROG	phrog_4089	NA	unknown function
UHGV-2151806_20	eggNOG-mapper	610130.Closa_0845	NA	NA
UHGV-2151806_21	PHROG	phrog_2581	virion structural protein	head and packaging
UHGV-2151806_21	eggNOG-mapper	411470.RUMGNA_00234	NA	NA
UHGV-2151806_21	Structural annotation	PF08873	NA	NA
UHGV-2151806_22	PHROG	phrog_27	tail completion or Neck1 protein	connector
UHGV-2151806_22	Structural annotation	PF06763	NA	NA
UHGV-2151806_23	PHROG	phrog_2551	minor tail protein	tail
UHGV-2151806_23	eggNOG-mapper	1235835.C814_01184	ATP-binding sugar transporter from pro-phage	NA
UHGV-2151806_23	Structural annotation	PF05354, TIGR01563, COG5614	NA	NA
UHGV-2151806_24	PHROG	phrog_29	major head protein	head and packaging
UHGV-2151806_24	UniRef90	UniRef90_UPI0019233712	major capsid protein	NA
UHGV-2151806_24	eggNOG-mapper	445972.ANACOL_03362	Phage major capsid protein E	NA
UHGV-2151806_24	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-2151806_24	Structural annotation	PF03864, MF_04133, TIGR04387, COG4653	NA	NA
UHGV-2151806_25	Structural annotation	PF02924	NA	NA
UHGV-2151806_26	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-2151806_26	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-2151806_26	UniRef90	UniRef90_A0A3A8Z098	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-2151806_26	eggNOG-mapper	1497679.EP56_02235	Serine dehydrogenase proteinase	NA
UHGV-2151806_26	Pfam	PF00574	Clp protease	CLP_protease
UHGV-2151806_26	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-2151806_26	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-2151806_27	PHROG	phrog_21	portal protein	head and packaging
UHGV-2151806_27	UniRef90	UniRef90_A0A1Q6LLL7	Phage portal protein	NA
UHGV-2151806_27	eggNOG-mapper	857293.CAAU_0797	Phage portal protein, lambda family	NA
UHGV-2151806_27	Pfam	PF05136	Phage portal protein, lambda family	Phage_portal_2
UHGV-2151806_27	NCBIFam	TIGR01539.1	phage portal protein	NA
UHGV-2151806_27	COG	COG5511	Phage capsid protein	NA
UHGV-2151806_27	Structural annotation	PF05136, MF_04135, TIGR01539, COG5511	NA	NA
UHGV-2151806_28	PHROG	phrog_118	head-tail adaptor	connector
UHGV-2151806_28	UniRef90	UniRef90_UPI0019D0AF1B	NA	NA
UHGV-2151806_28	eggNOG-mapper	1235793.C809_02659	NA	NA
UHGV-2151806_28	Pfam	PF19645	NA	DUF6148
UHGV-2151806_28	Structural annotation	PF19645	NA	NA
UHGV-2151806_29	KOfam	K21512	gpA; terminase, large subunit [EC:3.1.21.4]	NA
UHGV-2151806_29	PHROG	phrog_15	terminase large subunit	head and packaging
UHGV-2151806_29	UniRef90	UniRef90_A0A3A8YFM8	Phage terminase large subunit family protein	NA
UHGV-2151806_29	eggNOG-mapper	1235793.C809_02658	Phage terminase large subunit (GpA)	NA
UHGV-2151806_29	Pfam	PF05876	Phage terminase large subunit gpA, ATPase domain	GpA_ATPase
UHGV-2151806_29	Pfam	PF20454	Terminase large subunit gpA, endonuclease domain	GpA_nuclease
UHGV-2151806_29	COG	COG5525	Phage terminase, large subunit GpA	NA
UHGV-2151806_29	HAMAP	MF_04144	Terminase, large subunit	NA
UHGV-2151806_29	Structural annotation	PF05876, PF20454, MF_04144, TIGR01547, COG5525	NA	NA
UHGV-2151806_30	KOfam	K22014	Nu1, Noh; terminase small subunit / prophage DNA-packing protein	NA
UHGV-2151806_30	PHROG	phrog_57	terminase small subunit	head and packaging
UHGV-2151806_30	UniRef90	UniRef90_A0A1M7YBS6	Phage DNA packaging protein, Nu1 subunit of terminase	NA
UHGV-2151806_30	eggNOG-mapper	1235793.C809_02657	NA	NA
UHGV-2151806_30	COG	COG4220	Phage DNA packaging protein, Nu1 subunit of terminase	NA
UHGV-2151806_30	Structural annotation	PF07471, NF040990, COG4220	NA	NA
UHGV-2151806_31	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-2151806_31	PHROG	phrog_216	integrase	integration and excision
UHGV-2151806_31	UniRef90	UniRef90_A0A5S4W1B9	Site-specific integrase	NA
UHGV-2151806_31	eggNOG-mapper	500633.CLOHIR_00361	Site-specific recombinase, phage integrase family	NA
UHGV-2151806_31	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2151806_31	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2151806_31	Structural annotation	PF00589, MF_02055, NF040815, COG4973	NA	NA
UHGV-2151806_32	UniRef90	UniRef90_UPI001F1F8F5C	chemotaxis protein	NA
UHGV-2151806_32	eggNOG-mapper	1042156.CXIVA_01520	NA	NA
UHGV-2151806_32	Structural annotation	NF008671, COG4710	NA	NA
UHGV-2151806_37	PHROG	phrog_959	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2151806_37	UniRef90	UniRef90_R7CC66	NUMOD4 domain-containing protein	NA
UHGV-2151806_37	eggNOG-mapper	1410650.JHWL01000037_gene604	NA	NA
UHGV-2151806_37	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-2151806_37	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-2151806_37	Structural annotation	PF07463, PF07453, TIGR01453	NA	NA
UHGV-2151806_41	PHROG	phrog_391	replication initiation O-like	DNA, RNA and nucleotide metabolism
UHGV-2151806_41	UniRef90	UniRef90_UPI001AA16547	NA	NA
UHGV-2151806_41	eggNOG-mapper	411490.ANACAC_02410	DnaD domain protein	NA
UHGV-2151806_41	Pfam	PF19481	NA	DUF6017
UHGV-2151806_41	COG	COG3935	DNA replication protein DnaD	NA
UHGV-2151806_42	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2151806_42	UniRef90	UniRef90_R6YQW5	HNH endonuclease	NA
UHGV-2151806_42	eggNOG-mapper	610130.Closa_0730	HNH endonuclease	NA
UHGV-2151806_42	Pfam	PF01844	HNH endonuclease	HNH
UHGV-2151806_42	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2151806_42	Structural annotation	COG1403	NA	NA
UHGV-2151806_43	PHROG	phrog_13561	NA	unknown function
UHGV-2151806_43	Structural annotation	PF03501	NA	NA
UHGV-2151806_45	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-2151806_45	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-2151806_45	UniRef90	UniRef90_A0A7X3MFG0	Phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-2151806_45	eggNOG-mapper	1280696.ATVY01000096_gene1971	NA	NA
UHGV-2151806_45	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-2151806_45	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-2151806_45	Structural annotation	PF01507, MF_00063, TIGR00434, COG0175	NA	NA
UHGV-2151806_47	PHROG	phrog_959	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2151806_47	UniRef90	UniRef90_R7CC66	NUMOD4 domain-containing protein	NA
UHGV-2151806_47	eggNOG-mapper	1291050.JAGE01000002_gene3265	NA	NA
UHGV-2151806_47	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-2151806_47	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-2151806_48	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-2151806_48	PHROG	phrog_6218	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-2151806_48	UniRef90	UniRef90_R7CB61	Chromosome partitioning protein ParB family	NA
UHGV-2151806_48	eggNOG-mapper	411461.DORFOR_01144	Belongs to the ParB family	NA
UHGV-2151806_48	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-2151806_48	NCBIFam	TIGR00180.1	ParB/RepB/Spo0J family partition protein	NA
UHGV-2151806_48	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-2151806_48	Structural annotation	PF02195, PF18579, MF_02015, TIGR00180, COG1475	NA	NA
UHGV-2151806_50	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-2151806_50	PHROG	phrog_15982	NA	unknown function
UHGV-2151806_50	UniRef90	UniRef90_UPI001439CF4B	NA	NA
UHGV-2151806_50	eggNOG-mapper	641107.CDLVIII_1319	ParB-like nuclease domain	NA
UHGV-2151806_50	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-2151806_50	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-2151806_51	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-2151806_51	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-2151806_51	UniRef90	UniRef90_A0A3R5Z9Z8	ParA family protein	NA
UHGV-2151806_51	eggNOG-mapper	1235835.C814_03156	AAA domain	NA
UHGV-2151806_51	Pfam	PF13614	AAA domain	AAA_31
UHGV-2151806_51	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-2151806_51	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-2151806_56	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-2151806_56	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2151806_56	UniRef90	UniRef90_A0A1Q9J555	HTH cro/C1-type domain-containing protein	NA
UHGV-2151806_56	eggNOG-mapper	641107.CDLVIII_1309	Helix-turn-helix XRE-family like proteins	NA
UHGV-2151806_56	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2151806_56	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2151806_56	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-2151806_57	PHROG	phrog_5783	NA	unknown function
UHGV-2151806_57	UniRef90	UniRef90_A0A1G5F6B7	NYN domain-containing protein	NA
UHGV-2151806_57	eggNOG-mapper	665956.HMPREF1032_03590	NYN domain	NA
UHGV-2151806_57	Pfam	PF01936	NYN domain	NYN
UHGV-2151806_57	COG	COG1432	NYN domain, predicted PIN-related RNAse, tRNA/rRNA maturation	NA
UHGV-2151806_57	Structural annotation	PF01936, TIGR00288, COG1432	NA	NA
UHGV-2151806_60	KOfam	K07705	lytT, lytR; two-component system, LytTR family, response regulator LytT	NA
UHGV-2151806_60	PHROG	phrog_8810	NA	unknown function
UHGV-2151806_60	UniRef90	UniRef90_UPI001A451B3B	LytTR family DNA-binding domain-containing protein	NA
UHGV-2151806_60	eggNOG-mapper	622312.ROSEINA2194_03968	phosphorelay signal transduction system	NA
UHGV-2151806_60	Pfam	PF00072	Response regulator receiver domain	Response_reg
UHGV-2151806_60	Pfam	PF04397	LytTr DNA-binding domain	LytTR
UHGV-2151806_60	COG	COG3279	DNA-binding response regulator, LytR/AlgR family	NA
UHGV-2151806_60	Structural annotation	PF04397, PF00072, MF_00981, NF010684, COG3279	NA	NA
UHGV-2151806_62	UniRef90	UniRef90_C4Z656	NA	NA
UHGV-2151806_62	Structural annotation	PF14213	NA	NA
UHGV-2151806_63	eggNOG-mapper	515620.EUBELI_20304	NA	NA
UHGV-2151806_63	Structural annotation	MF_00637, TIGR01925, COG2172	NA	NA
UHGV-2151806_64	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-2151806_64	PHROG	phrog_95	integrase	integration and excision
UHGV-2151806_64	UniRef90	UniRef90_A0A3E3IM77	Recombinase family protein	NA
UHGV-2151806_64	eggNOG-mapper	1235800.C819_02271	Resolvase, N terminal domain	NA
UHGV-2151806_64	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-2151806_64	Pfam	PF07508	Recombinase	Recombinase
UHGV-2151806_64	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-2151806_64	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2151806_64	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA