UHGV-2151888

Genome information

Genome length 37,604 bps

CDS count 63

Completeness 97.84% (high-quality)

geNomad score 0.9712

Prediction confidence Confident

Genome information
Genome ID	UHGV-2151888
vOTU ID	vOTU-009179
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029764\|Ga0243769_100171\|provirus_7269_44872
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.84% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9712
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	50.94
Jumbo phage	No

Genome content
Genome length	37,604 bps
GC content	63.11%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	63
CDS density	95.54%
Average CDS length	573.71 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2151888_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-2151888_1	PHROG	phrog_95	integrase	integration and excision
UHGV-2151888_1	UniRef90	UniRef90_UPI001D103153	recombinase family protein	NA
UHGV-2151888_1	eggNOG-mapper	521003.COLINT_02298	Resolvase, N terminal domain	NA
UHGV-2151888_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-2151888_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-2151888_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-2151888_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2151888_1	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-2151888_2	PHROG	phrog_3675	NA	unknown function
UHGV-2151888_2	UniRef90	UniRef90_C4F8C8	YjcQ protein	NA
UHGV-2151888_2	eggNOG-mapper	502558.EGYY_24950	YjcQ protein	NA
UHGV-2151888_2	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-2151888_2	Structural annotation	PF09639, TIGR04176, COG2345	NA	NA
UHGV-2151888_3	KOfam	K18831	higA; HTH-type transcriptional regulator / antitoxin HigA	NA
UHGV-2151888_3	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-2151888_3	UniRef90	UniRef90_A0A1Y3UMU9	HTH cro/C1-type domain-containing protein	NA
UHGV-2151888_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2151888_3	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-2151888_3	Structural annotation	PF13560, NF041677, COG1396	NA	NA
UHGV-2151888_4	UniRef90	UniRef90_A0A6N9JKK5	Helix-turn-helix domain-containing protein	NA
UHGV-2151888_4	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-2151888_11	eggNOG-mapper	1111121.HMPREF1247_0049	NA	NA
UHGV-2151888_12	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-2151888_12	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2151888_12	UniRef90	UniRef90_C4F8E1	Crossover junction endodeoxyribonuclease RusA	NA
UHGV-2151888_12	eggNOG-mapper	521003.COLINT_02312	Endodeoxyribonuclease RusA	NA
UHGV-2151888_12	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-2151888_12	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-2151888_12	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-2151888_13	PHROG	phrog_674	NA	unknown function
UHGV-2151888_13	UniRef90	UniRef90_UPI0013714FD9	NA	NA
UHGV-2151888_13	eggNOG-mapper	521003.COLINT_02315	NA	NA
UHGV-2151888_13	Pfam	PF07083	NA	DUF1351
UHGV-2151888_13	Structural annotation	PF07083	NA	NA
UHGV-2151888_14	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2151888_14	UniRef90	UniRef90_UPI00096A271C	ERF family protein	NA
UHGV-2151888_14	eggNOG-mapper	355246.Q333D6_9CAUD	ERF superfamily	NA
UHGV-2151888_14	Pfam	PF04404	ERF superfamily	ERF
UHGV-2151888_14	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-2151888_15	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-2151888_15	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2151888_15	UniRef90	UniRef90_R6Z1V7	Single-stranded DNA-binding protein	NA
UHGV-2151888_15	eggNOG-mapper	1118060.CAGZ01000028_gene971	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-2151888_15	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2151888_15	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-2151888_15	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2151888_15	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-2151888_15	Structural annotation	PF00436, MF_00984, NF005406, COG0629	NA	NA
UHGV-2151888_16	COG	COG0792	Predicted endonuclease distantly related to archaeal Holliday junction resolvase, YraN/UPF0102 family	NA
UHGV-2151888_16	Structural annotation	PF13020, MF_00048, NF009154, COG0792	NA	NA
UHGV-2151888_17	PHROG	phrog_15768	NA	unknown function
UHGV-2151888_17	UniRef90	UniRef90_A0A1H4JD01	NA	NA
UHGV-2151888_17	eggNOG-mapper	521003.COLINT_02320	NA	NA
UHGV-2151888_17	Pfam	PF19808	NA	DUF6291
UHGV-2151888_17	Structural annotation	PF19808	NA	NA
UHGV-2151888_18	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-2151888_18	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-2151888_18	UniRef90	UniRef90_C4F8F0	IstB_IS21 domain-containing protein	NA
UHGV-2151888_18	eggNOG-mapper	521003.COLINT_02321	IstB-like ATP binding protein	NA
UHGV-2151888_18	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-2151888_18	COG	COG1484	DNA replication protein DnaC	NA
UHGV-2151888_19	eggNOG-mapper	469378.Ccur_02900	NA	NA
UHGV-2151888_24	UniRef90	UniRef90_A0A5K1ISM8	NUMOD4 motif protein	NA
UHGV-2151888_24	eggNOG-mapper	521003.COLINT_02330	NA	NA
UHGV-2151888_25	Structural annotation	PF01503, MF_01020, TIGR03188, COG0140	NA	NA
UHGV-2151888_27	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-2151888_27	UniRef90	UniRef90_UPI001485678D	Lar family restriction alleviation protein	NA
UHGV-2151888_27	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-2151888_30	PHROG	phrog_21525	NA	unknown function
UHGV-2151888_33	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-2151888_33	UniRef90	UniRef90_UPI0013ED392B	type II toxin-antitoxin system HicA family toxin	NA
UHGV-2151888_33	eggNOG-mapper	1235794.C811_01666	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-2151888_33	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-2151888_33	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-2151888_33	Structural annotation	PF07927, COG1724	NA	NA
UHGV-2151888_35	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-2151888_35	UniRef90	UniRef90_UPI0013EA7A23	type II toxin-antitoxin system HicB family antitoxin	NA
UHGV-2151888_35	eggNOG-mapper	742742.HMPREF9452_00080	PFAM Uncharacterised protein family UPF0150	NA
UHGV-2151888_35	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-2151888_35	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-2151888_35	Structural annotation	PF15970, PF12728, TIGR01764, COG1598, COG3311	NA	NA
UHGV-2151888_36	Structural annotation	PF19575	NA	NA
UHGV-2151888_37	PHROG	phrog_589	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2151888_37	UniRef90	UniRef90_A0A1E8VT75	HNHc domain-containing protein	NA
UHGV-2151888_37	eggNOG-mapper	1453501.JELR01000001_gene2533	HNH endonuclease	NA
UHGV-2151888_37	Pfam	PF01844	HNH endonuclease	HNH
UHGV-2151888_37	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2151888_37	Structural annotation	PF01844, COG1403	NA	NA
UHGV-2151888_38	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-2151888_38	PHROG	phrog_498	DNA methyltransferase	other
UHGV-2151888_38	UniRef90	UniRef90_A0A413UHU2	ParB domain-containing protein	NA
UHGV-2151888_38	eggNOG-mapper	521003.COLINT_02335	DNA methylase	NA
UHGV-2151888_38	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-2151888_38	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-2151888_38	COG	COG0863	DNA modification methylase	NA
UHGV-2151888_39	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-2151888_39	PHROG	phrog_498	DNA methyltransferase	other
UHGV-2151888_39	UniRef90	UniRef90_UPI001F45E507	site-specific DNA-methyltransferase	NA
UHGV-2151888_39	eggNOG-mapper	521003.COLINT_02335	DNA methylase	NA
UHGV-2151888_39	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-2151888_39	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-2151888_39	COG	COG0863	DNA modification methylase	NA
UHGV-2151888_39	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-2151888_40	PHROG	phrog_6975	NA	unknown function
UHGV-2151888_40	UniRef90	UniRef90_UPI001C0290E2	NA	NA
UHGV-2151888_40	COG	COG2452	Predicted site-specific integrase-resolvase	NA
UHGV-2151888_41	UniRef90	UniRef90_A0A1H4JCA0	Phage terminase, small subunit, putative, P27 family	NA
UHGV-2151888_41	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-2151888_41	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-2151888_42	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2151888_42	UniRef90	UniRef90_UPI0013EE3342	terminase large subunit	NA
UHGV-2151888_42	eggNOG-mapper	1504822.CCNO01000015_gene618	Terminase	NA
UHGV-2151888_42	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2151888_42	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2151888_42	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2151888_42	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-2151888_43	PHROG	phrog_12	portal protein	head and packaging
UHGV-2151888_43	UniRef90	UniRef90_A0A1Y3UFU2	Phage portal protein	NA
UHGV-2151888_43	eggNOG-mapper	1453501.JELR01000001_gene2530	Phage portal protein	NA
UHGV-2151888_43	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2151888_43	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-2151888_43	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2151888_43	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-2151888_44	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-2151888_44	PHROG	phrog_2976	head maturation protease	head and packaging
UHGV-2151888_44	UniRef90	UniRef90_A0A1H4JCN3	ATP-dependent protease ClpP, protease subunit	NA
UHGV-2151888_44	eggNOG-mapper	945712.CULC22_01177	Protease subunit of ATP-dependent Clp proteases	NA
UHGV-2151888_44	Pfam	PF00574	Clp protease	CLP_protease
UHGV-2151888_44	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-2151888_44	Structural annotation	PF00574, MF_00444, NF011091, COG0740	NA	NA
UHGV-2151888_45	PHROG	phrog_10	major head protein	head and packaging
UHGV-2151888_45	UniRef90	UniRef90_A0A1H4JC67	Phage major capsid protein, HK97 family	NA
UHGV-2151888_45	eggNOG-mapper	1504822.CCNO01000015_gene621	Phage capsid family	NA
UHGV-2151888_45	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2151888_45	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2151888_45	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2151888_47	PHROG	phrog_442	head-tail adaptor	connector
UHGV-2151888_47	Structural annotation	TIGR02215	NA	NA
UHGV-2151888_48	Structural annotation	PF08873	NA	NA
UHGV-2151888_49	Structural annotation	PF20873	NA	NA
UHGV-2151888_50	PHROG	phrog_290	minor tail protein	tail
UHGV-2151888_50	UniRef90	UniRef90_UPI0013EAFFA2	phage tail tube protein	NA
UHGV-2151888_50	Pfam	PF18906	Phage tail tube protein	Phage_tube_2
UHGV-2151888_50	Structural annotation	PF18906, TIGR01603, COG3498	NA	NA
UHGV-2151888_52	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-2151888_53	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-2151888_53	UniRef90	UniRef90_A0A1Y3UG21	Phage tail tape measure protein	NA
UHGV-2151888_53	eggNOG-mapper	903814.ELI_1307	Phage-related minor tail protein	NA
UHGV-2151888_53	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-2151888_53	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-2151888_53	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-2151888_53	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-2151888_54	KOfam	K06882	NA	NA
UHGV-2151888_54	UniRef90	UniRef90_A0A5K1ISL1	Fibronectin type-III domain-containing protein	NA
UHGV-2151888_54	eggNOG-mapper	1504822.CCNO01000015_gene633	cellulase activity	NA
UHGV-2151888_54	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-2151888_54	Structural annotation	PF00041, PF02010, PF19266, MF_04116, NF010681, TIGR02126, COG3401, COG3499	NA	NA
UHGV-2151888_55	PHROG	phrog_1887	tail protein	tail
UHGV-2151888_55	eggNOG-mapper	1504822.CCNO01000015_gene634	NA	NA
UHGV-2151888_55	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-2151888_56	Structural annotation	PF01455, MF_00085, NF003076, COG0361	NA	NA
UHGV-2151888_57	PHROG	phrog_819	tail protein	tail
UHGV-2151888_57	eggNOG-mapper	428127.EUBDOL_01210	self proteolysis	NA
UHGV-2151888_57	COG	COG3209	NA	NA
UHGV-2151888_60	PHROG	phrog_443	holin	lysis
UHGV-2151888_60	UniRef90	UniRef90_UPI0003F8D3E5	holin	NA
UHGV-2151888_60	eggNOG-mapper	553184.ATORI0001_1165	Putative lactococcus lactis phage r1t holin	NA
UHGV-2151888_60	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-2151888_60	Structural annotation	PF16945	NA	NA
UHGV-2151888_62	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2151888_62	PHROG	phrog_7698	endolysin	lysis
UHGV-2151888_62	UniRef90	UniRef90_UPI0011072D8D	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2151888_62	eggNOG-mapper	877411.JMMA01000002_gene2384	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2151888_62	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-2151888_62	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-2151888_62	Structural annotation	PF01510, PF01476, PF15591, MF_02014, MF_04111, MF_01354, NF008758, NF010723, TIGR00405, COG3023, COG5004, COG2139	NA	NA