UHGV-2152020

Genome information

Genome length 29,442 bps

CDS count 49

Completeness 93.49% (high-quality)

geNomad score 0.9561

Prediction confidence Confident

Genome information
Genome ID	UHGV-2152020
vOTU ID	vOTU-013486
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029733\|Ga0245176_100002\|provirus_33410_137806
BioSample	NA
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	93.49% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9561
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	53.9
Jumbo phage	No

Genome content
Genome length	29,442 bps
GC content	27.37%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	91.80%
Average CDS length	557.27 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2152020_1	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2152020_1	PHROG	phrog_7698	endolysin	lysis
UHGV-2152020_1	UniRef90	UniRef90_A0A4D6B3C2	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2152020_1	eggNOG-mapper	1123315.AUIP01000001_gene1438	Cpl-7 lysozyme C-terminal domain protein	NA
UHGV-2152020_1	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-2152020_1	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-2152020_1	COG	COG1388	LysM repeat	NA
UHGV-2152020_1	Structural annotation	PF01510, MF_04111, NF008758, COG3023	NA	NA
UHGV-2152020_3	PHROG	phrog_881	holin	lysis
UHGV-2152020_3	UniRef90	UniRef90_A0A7W2FHN3	Phage holin	NA
UHGV-2152020_3	eggNOG-mapper	476272.RUMHYD_01966	Putative phage holin Dp-1	NA
UHGV-2152020_3	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-2152020_3	Structural annotation	PF16938	NA	NA
UHGV-2152020_4	PHROG	phrog_689	holin	lysis
UHGV-2152020_4	eggNOG-mapper	324057.Pjdr2_5163	Haemolysin XhlA	NA
UHGV-2152020_4	Pfam	PF10779	Haemolysin XhlA	XhlA
UHGV-2152020_5	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-2152020_5	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-2152020_5	UniRef90	UniRef90_A0A174SZA9	Retron-type reverse transcriptase	NA
UHGV-2152020_5	eggNOG-mapper	665950.HMPREF1025_01556	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-2152020_5	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-2152020_5	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-2152020_5	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-2152020_5	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-2152020_6	eggNOG-mapper	97139.C824_00240	NA	NA
UHGV-2152020_6	Structural annotation	PF05635, NF008912	NA	NA
UHGV-2152020_7	UniRef90	UniRef90_A0A1G6NQ88	NA	NA
UHGV-2152020_7	eggNOG-mapper	411460.RUMTOR_01331	NA	NA
UHGV-2152020_7	Pfam	PF19789	NA	DUF6273
UHGV-2152020_7	Structural annotation	PF19789	NA	NA
UHGV-2152020_8	PHROG	phrog_1220	head protein	head and packaging
UHGV-2152020_8	UniRef90	UniRef90_R6SMG3	Conserved domain protein	NA
UHGV-2152020_8	eggNOG-mapper	1211817.CCAT010000079_gene1381	COG NOG18825 non supervised orthologous group	NA
UHGV-2152020_8	Structural annotation	PF20747	NA	NA
UHGV-2152020_9	PHROG	phrog_538	minor tail protein	tail
UHGV-2152020_9	UniRef90	UniRef90_UPI001EE8FAB7	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-2152020_9	eggNOG-mapper	755731.Clo1100_0557	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-2152020_9	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-2152020_9	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-2152020_10	PHROG	phrog_36410	NA	unknown function
UHGV-2152020_10	UniRef90	UniRef90_R6SIV1	Conserved domain protein	NA
UHGV-2152020_10	eggNOG-mapper	411468.CLOSCI_00539	COG NOG18823 non supervised orthologous group	NA
UHGV-2152020_10	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-2152020_10	COG	COG4722	Phage-related protein YomH	NA
UHGV-2152020_10	Structural annotation	PF05709, PF20753, TIGR01633, COG4722	NA	NA
UHGV-2152020_11	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-2152020_11	eggNOG-mapper	374526.A5GYM8_9CAUD	NA	NA
UHGV-2152020_11	Structural annotation	PF20155, COG5280	NA	NA
UHGV-2152020_12	eggNOG-mapper	1399942.U3PCS7_9CAUD	NA	NA
UHGV-2152020_13	PHROG	phrog_88	major tail protein	tail
UHGV-2152020_13	UniRef90	UniRef90_A0A075KJR8	Putative major tail protein	NA
UHGV-2152020_13	eggNOG-mapper	1399942.U3PBH4_9CAUD	NA	NA
UHGV-2152020_13	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-2152020_13	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-2152020_14	PHROG	phrog_78	tail terminator	connector
UHGV-2152020_14	UniRef90	UniRef90_UPI0003697F12	NA	NA
UHGV-2152020_14	eggNOG-mapper	508419.F8J167_9CAUD	NA	NA
UHGV-2152020_14	Structural annotation	PF05657	NA	NA
UHGV-2152020_15	eggNOG-mapper	508419.F8J166_9CAUD	NA	NA
UHGV-2152020_15	Structural annotation	TIGR01725	NA	NA
UHGV-2152020_16	PHROG	phrog_25	head closure Hc1	connector
UHGV-2152020_16	UniRef90	UniRef90_A0A843I196	Phage head closure protein	NA
UHGV-2152020_16	eggNOG-mapper	508419.F8J165_9CAUD	Phage head-tail joining protein	NA
UHGV-2152020_16	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-2152020_16	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-2152020_16	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2152020_17	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-2152020_17	UniRef90	UniRef90_A0A6P1MNU9	Phage gp6-like head-tail connector protein	NA
UHGV-2152020_17	eggNOG-mapper	508419.F8J164_9CAUD	NA	NA
UHGV-2152020_17	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-2152020_17	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-2152020_17	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-2152020_19	PHROG	phrog_10	major head protein	head and packaging
UHGV-2152020_19	UniRef90	UniRef90_A0A3D1WLZ9	Phage major capsid protein	NA
UHGV-2152020_19	eggNOG-mapper	1399942.U3PDR8_9CAUD	peptidase activity	NA
UHGV-2152020_19	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2152020_19	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2152020_19	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2152020_20	KOfam	K06904	NA	NA
UHGV-2152020_20	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-2152020_20	UniRef90	UniRef90_R6GRF8	Phage prohead protease HK97 family	NA
UHGV-2152020_20	eggNOG-mapper	1414720.CBYM010000002_gene573	Phage prohead protease, HK97 family	NA
UHGV-2152020_20	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-2152020_20	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-2152020_20	COG	COG3740	Phage head maturation protease	NA
UHGV-2152020_20	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-2152020_21	PHROG	phrog_12	portal protein	head and packaging
UHGV-2152020_21	UniRef90	UniRef90_A0A843HZ12	Phage portal protein	NA
UHGV-2152020_21	eggNOG-mapper	1399942.U3PFW0_9CAUD	Phage portal protein	NA
UHGV-2152020_21	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2152020_21	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-2152020_21	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-2152020_22	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2152020_22	UniRef90	UniRef90_R7F036	Putative terminase large subunit	NA
UHGV-2152020_22	eggNOG-mapper	1304866.K413DRAFT_1222	Terminase	NA
UHGV-2152020_22	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2152020_22	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2152020_22	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2152020_22	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-2152020_23	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-2152020_23	UniRef90	UniRef90_R7EZT4	Phage-related protein	NA
UHGV-2152020_23	eggNOG-mapper	903814.ELI_1295	phage terminase small subunit	NA
UHGV-2152020_23	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-2152020_23	COG	COG3747	Phage terminase, small subunit	NA
UHGV-2152020_24	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-2152020_24	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2152020_24	UniRef90	UniRef90_R7EY52	HNHc domain-containing protein	NA
UHGV-2152020_24	eggNOG-mapper	1304866.K413DRAFT_1217	HNH nucleases	NA
UHGV-2152020_24	Pfam	PF01844	HNH endonuclease	HNH
UHGV-2152020_25	PHROG	phrog_23660	NA	unknown function
UHGV-2152020_28	eggNOG-mapper	1297617.JPJD01000020_gene313	NA	NA
UHGV-2152020_31	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-2152020_31	PHROG	phrog_216	integrase	integration and excision
UHGV-2152020_31	UniRef90	UniRef90_R7EZA3	Tyr recombinase domain-containing protein	NA
UHGV-2152020_31	eggNOG-mapper	1123298.KB904077_gene454	Integrase	NA
UHGV-2152020_31	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2152020_31	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2152020_31	Structural annotation	PF00589, MF_02055, NF040815, COG4973	NA	NA
UHGV-2152020_32	PHROG	phrog_918	NA	unknown function
UHGV-2152020_32	UniRef90	UniRef90_UPI00115A7D93	NA	NA
UHGV-2152020_32	eggNOG-mapper	469618.FVAG_01307	NA	NA
UHGV-2152020_32	Pfam	PF19791	NA	DUF6275
UHGV-2152020_32	Structural annotation	PF19791	NA	NA
UHGV-2152020_36	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-2152020_36	UniRef90	UniRef90_A0A315Y0X2	MazG-like nucleotide pyrophosphohydrolase family protein	NA
UHGV-2152020_40	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2152020_40	UniRef90	UniRef90_A0A7X7SYD5	RNA polymerase subunit sigma-24	NA
UHGV-2152020_40	eggNOG-mapper	1095747.HMPREF1049_2015	NA	NA
UHGV-2152020_40	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-2152020_40	Structural annotation	PF07374, MF_00674, NF001074	NA	NA
UHGV-2152020_42	PHROG	phrog_8489	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-2152020_42	UniRef90	UniRef90_A0A0K8MHB1	DNA replication protein	NA
UHGV-2152020_42	eggNOG-mapper	762550.LEGAS_1609	DnaD domain protein	NA
UHGV-2152020_42	COG	COG3935	DNA replication protein DnaD	NA
UHGV-2152020_42	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-2152020_43	PHROG	phrog_4973	NA	unknown function
UHGV-2152020_43	UniRef90	UniRef90_A0A3R6RL03	DNA-binding protein	NA
UHGV-2152020_43	eggNOG-mapper	1072685.IX83_07155	Helix-turn-helix domain	NA
UHGV-2152020_43	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-2152020_43	Structural annotation	PF14090, NF040939, COG4738	NA	NA
UHGV-2152020_45	PHROG	phrog_6058	NA	unknown function
UHGV-2152020_45	UniRef90	UniRef90_A0A101WT85	Modification methylase SinI	NA
UHGV-2152020_45	eggNOG-mapper	1123288.SOV_2c10360	NA	NA
UHGV-2152020_45	Structural annotation	PF12728, TIGR01764	NA	NA
UHGV-2152020_46	UniRef90	UniRef90_B1BPN1	HTH cro/C1-type domain-containing protein	NA
UHGV-2152020_46	eggNOG-mapper	1064535.MELS_1289	NA	NA
UHGV-2152020_46	Pfam	PF05339	NA	DUF739
UHGV-2152020_46	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-2152020_47	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-2152020_47	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-2152020_47	UniRef90	UniRef90_R7EZW6	LexA repressor	NA
UHGV-2152020_47	eggNOG-mapper	1321820.HMPREF1983_00958	Helix-turn-helix XRE-family like proteins	NA
UHGV-2152020_47	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2152020_47	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-2152020_47	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-2152020_47	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-2152020_49	KOfam	K14059	int; integrase	NA
UHGV-2152020_49	PHROG	phrog_1	integrase	integration and excision
UHGV-2152020_49	UniRef90	UniRef90_R7F068	Site-specific recombinase phage integrase family	NA
UHGV-2152020_49	eggNOG-mapper	558169.AGAV01000001_gene3323	Phage integrase family	NA
UHGV-2152020_49	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2152020_49	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2152020_49	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA