UHGV-2152144

Genome information

vOTU vOTU-019906

Genome length 36,720 bps

CDS count 38

Completeness 79.15% (medium-quality)

geNomad score 0.9446

Prediction confidence Confident

Genome information
Genome ID	UHGV-2152144
vOTU ID	vOTU-019906
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029718\|Ga0245237_1000554\|provirus_4800_46192
BioSample	SAMEA3449289
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	79.15% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9446
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	60.44
Jumbo phage	No

Genome content
Genome length	36,720 bps
GC content	38.71%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	38
CDS density	88.09%
Average CDS length	854.29 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2152144_2	PHROG	phrog_11138	NA	unknown function
UHGV-2152144_2	UniRef90	UniRef90_A0A352NTP8	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-2152144_2	eggNOG-mapper	1540257.JQMW01000004_gene446	DNA-templated transcription, initiation	NA
UHGV-2152144_2	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-2152144_2	Structural annotation	PF08281, MF_00245, NF009186, COG1595	NA	NA
UHGV-2152144_3	PHROG	phrog_7234	NA	unknown function
UHGV-2152144_4	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-2152144_4	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2152144_4	UniRef90	UniRef90_A0A7C6V9N7	DEAD/DEAH box helicase	NA
UHGV-2152144_4	eggNOG-mapper	720554.Clocl_3740	helicase	NA
UHGV-2152144_4	PADLOC	ZorD1_00007	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-2152144_4	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-2152144_4	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-2152144_4	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-2152144_4	Structural annotation	PF00176, PF00271, MF_01821, NF041790, COG0553	NA	NA
UHGV-2152144_5	PHROG	phrog_2378	NA	unknown function
UHGV-2152144_5	UniRef90	UniRef90_A0A0E4GE38	STAT transcription factor, coiled coil	NA
UHGV-2152144_5	eggNOG-mapper	720554.Clocl_3739	NA	NA
UHGV-2152144_6	PHROG	phrog_23155	NA	unknown function
UHGV-2152144_6	eggNOG-mapper	203119.Cthe_1651	NA	NA
UHGV-2152144_6	Structural annotation	PF18897	NA	NA
UHGV-2152144_7	KOfam	K02335	polA; DNA polymerase I [EC:2.7.7.7]	NA
UHGV-2152144_7	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-2152144_7	UniRef90	UniRef90_UPI00058BA86A	bifunctional 3'-5' exonuclease/DNA polymerase	NA
UHGV-2152144_7	eggNOG-mapper	1286171.EAL2_c05220	3'-5' exonuclease	NA
UHGV-2152144_7	PADLOC	drt-cluster58	DRT	DRT
UHGV-2152144_7	Pfam	PF01612	3'-5' exonuclease	DNA_pol_A_exo1
UHGV-2152144_7	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-2152144_7	NCBIFam	NF011541.0	bifunctional 3'-5' exonuclease/DNA polymerase	NA
UHGV-2152144_7	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-2152144_7	Structural annotation	PF00476, PF01612, MF_04101, NF011541, COG0749	NA	NA
UHGV-2152144_8	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-2152144_8	UniRef90	UniRef90_A0A6N9P4V0	NA	NA
UHGV-2152144_8	eggNOG-mapper	498761.HM1_2897	NA	NA
UHGV-2152144_8	Pfam	PF14359	NA	DUF4406
UHGV-2152144_8	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-2152144_9	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-2152144_9	UniRef90	UniRef90_UPI001AE9E472	NA	NA
UHGV-2152144_9	eggNOG-mapper	411483.FAEPRAA2165_03343	NA	NA
UHGV-2152144_9	Pfam	PF06048	NA	DUF927
UHGV-2152144_9	COG	COG5519	NA	NA
UHGV-2152144_10	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-2152144_10	UniRef90	UniRef90_UPI00068CF7C0	NA	NA
UHGV-2152144_10	eggNOG-mapper	693746.OBV_41740	NA	NA
UHGV-2152144_10	Pfam	PF06048	NA	DUF927
UHGV-2152144_10	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-2152144_10	COG	COG5519	NA	NA
UHGV-2152144_10	Structural annotation	PF18662, COG5519	NA	NA
UHGV-2152144_11	eggNOG-mapper	994573.T472_0211840	VRR_NUC	NA
UHGV-2152144_12	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2152144_12	UniRef90	UniRef90_A0A6B0E4I7	NA	NA
UHGV-2152144_12	eggNOG-mapper	1414720.CBYM010000005_gene1360	sigma factor activity	NA
UHGV-2152144_12	Pfam	PF07374	NA	DUF1492
UHGV-2152144_12	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-2152144_12	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-2152144_13	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-2152144_13	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2152144_13	UniRef90	UniRef90_A0A231NWP5	HNH endonuclease	NA
UHGV-2152144_13	eggNOG-mapper	696281.Desru_3563	HNH endonuclease	NA
UHGV-2152144_13	Pfam	PF01844	HNH endonuclease	HNH
UHGV-2152144_13	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2152144_13	Structural annotation	PF01844, COG1403	NA	NA
UHGV-2152144_14	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-2152144_14	UniRef90	UniRef90_A0A7X8MMF2	P27 family phage terminase small subunit	NA
UHGV-2152144_14	eggNOG-mapper	696281.Desru_3560	NA	NA
UHGV-2152144_14	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-2152144_14	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-2152144_15	UniRef90	UniRef90_A0A848APL1	Nicotinamide mononucleotide transporter	NA
UHGV-2152144_15	Pfam	PF04973	Nicotinamide mononucleotide transporter	NMN_transporter
UHGV-2152144_15	COG	COG3201	Nicotinamide riboside transporter PnuC	NA
UHGV-2152144_15	Structural annotation	PF07578	NA	NA
UHGV-2152144_16	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-2152144_16	PHROG	phrog_498	DNA methyltransferase	other
UHGV-2152144_16	UniRef90	UniRef90_A0A7K3ZIC8	Type II methyltransferase	NA
UHGV-2152144_16	eggNOG-mapper	585198.HMPREF0574_0605	DNA methylase	NA
UHGV-2152144_16	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-2152144_16	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-2152144_16	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-2152144_16	COG	COG0863	DNA modification methylase	NA
UHGV-2152144_16	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-2152144_17	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2152144_17	UniRef90	UniRef90_UPI000B7FA7CC	terminase large subunit	NA
UHGV-2152144_17	eggNOG-mapper	411468.CLOSCI_00208	Phage Terminase	NA
UHGV-2152144_17	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2152144_17	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2152144_17	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2152144_17	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-2152144_18	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-2152144_18	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-2152144_18	UniRef90	UniRef90_A0A644UCA3	Bro-N domain-containing protein	NA
UHGV-2152144_18	eggNOG-mapper	397288.C806_04963	Phage antirepressor protein KilAC domain	NA
UHGV-2152144_18	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-2152144_18	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-2152144_18	COG	COG3617	Prophage antirepressor	NA
UHGV-2152144_18	Structural annotation	PF02498, TIGR02681, COG3617	NA	NA
UHGV-2152144_19	PHROG	phrog_12	portal protein	head and packaging
UHGV-2152144_19	UniRef90	UniRef90_R6GS48	Phage portal protein HK97 family	NA
UHGV-2152144_19	eggNOG-mapper	580327.Tthe_0791	TIGRFAM phage portal protein, HK97 family	NA
UHGV-2152144_19	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2152144_19	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-2152144_19	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2152144_19	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-2152144_20	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-2152144_20	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-2152144_20	UniRef90	UniRef90_R6GI34	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-2152144_20	eggNOG-mapper	498761.HM1_2881	Belongs to the peptidase S14 family	NA
UHGV-2152144_20	Pfam	PF00574	Clp protease	CLP_protease
UHGV-2152144_20	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-2152144_20	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-2152144_21	PHROG	phrog_10	major head protein	head and packaging
UHGV-2152144_21	UniRef90	UniRef90_R6GQV7	Phage major capsid protein hk97 family	NA
UHGV-2152144_21	eggNOG-mapper	1540257.JQMW01000004_gene417	Phage major capsid protein, HK97 family	NA
UHGV-2152144_21	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2152144_21	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2152144_21	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2152144_21	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2152144_22	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-2152144_22	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-2152144_22	UniRef90	UniRef90_A0A395XQP4	Group II intron reverse transcriptase/maturase	NA
UHGV-2152144_22	eggNOG-mapper	428125.CLOLEP_00803	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-2152144_22	PADLOC	PtuC2_00002	Reverse transcriptase	Septu
UHGV-2152144_22	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-2152144_22	Pfam	PF01844	HNH endonuclease	HNH
UHGV-2152144_22	NCBIFam	TIGR04416.1	group II intron reverse transcriptase/maturase	NA
UHGV-2152144_22	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2152144_22	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-2152144_23	PHROG	phrog_12102	NA	unknown function
UHGV-2152144_23	UniRef90	UniRef90_A0A0A2TKC4	Head fiber protein	NA
UHGV-2152144_23	eggNOG-mapper	1286171.EAL2_c05350	NA	NA
UHGV-2152144_24	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-2152144_24	UniRef90	UniRef90_A0A3N1XN43	Gp6-like head-tail connector protein	NA
UHGV-2152144_24	eggNOG-mapper	1235835.C814_01277	Phage gp6-like head-tail connector protein	NA
UHGV-2152144_24	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-2152144_24	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-2152144_24	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-2152144_25	UniRef90	UniRef90_A0A1D8GMU9	Phage head-tail adapter protein	NA
UHGV-2152144_25	eggNOG-mapper	720554.Clocl_3714	Phage head-tail joining protein	NA
UHGV-2152144_25	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-2152144_25	COG	COG5614	Phage head-tail adaptor	NA
UHGV-2152144_25	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2152144_26	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2152144_26	UniRef90	UniRef90_A0A147K4H7	HK97 gp10 family phage protein	NA
UHGV-2152144_26	eggNOG-mapper	994573.T472_0210740	TIGRFAM phage protein, HK97 gp10 family	NA
UHGV-2152144_26	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2152144_26	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-2152144_26	Structural annotation	TIGR01725	NA	NA
UHGV-2152144_27	PHROG	phrog_78	tail terminator	connector
UHGV-2152144_27	eggNOG-mapper	498761.HM1_2876	NA	NA
UHGV-2152144_27	Structural annotation	PF05657, NF040576, COG3167	NA	NA
UHGV-2152144_28	PHROG	phrog_88	major tail protein	tail
UHGV-2152144_28	UniRef90	UniRef90_A0A1E3C2W6	Phage tail protein	NA
UHGV-2152144_28	eggNOG-mapper	1121289.JHVL01000019_gene661	Pkd domain containing protein	NA
UHGV-2152144_28	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-2152144_28	COG	COG3291	NA	NA
UHGV-2152144_28	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-2152144_29	PHROG	phrog_2115	tail protein	tail
UHGV-2152144_29	UniRef90	UniRef90_A0A223I0Y8	DNA-cytosine methyltransferase	NA
UHGV-2152144_29	eggNOG-mapper	1216932.CM240_0682	NA	NA
UHGV-2152144_29	Structural annotation	PF11836	NA	NA
UHGV-2152144_30	eggNOG-mapper	1235835.C814_01283	NA	NA
UHGV-2152144_31	PHROG	phrog_13339	tail length tape measure protein	tail
UHGV-2152144_31	UniRef90	UniRef90_UPI0013D58210	phage tail tape measure protein	NA
UHGV-2152144_31	eggNOG-mapper	997346.HMPREF9374_1109	Phage tail tape measure protein, TP901 family	NA
UHGV-2152144_31	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-2152144_31	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-2152144_31	COG	COG5283	Phage-related tail protein	NA
UHGV-2152144_31	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-2152144_32	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-2152144_32	UniRef90	UniRef90_UPI0005750BC7	phage tail family protein	NA
UHGV-2152144_32	eggNOG-mapper	272562.CA_C0062	tail component	NA
UHGV-2152144_32	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-2152144_32	COG	COG4722	Phage-related protein YomH	NA
UHGV-2152144_32	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-2152144_33	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-2152144_33	UniRef90	UniRef90_UPI001C1127BE	phage tail protein	NA
UHGV-2152144_33	eggNOG-mapper	1408823.AXUS01000025_gene2634	Phage minor structural protein	NA
UHGV-2152144_33	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-2152144_33	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-2152144_33	COG	COG4926	Phage-related protein	NA
UHGV-2152144_33	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-2152144_36	PHROG	phrog_21231	virion structural protein	head and packaging
UHGV-2152144_36	eggNOG-mapper	693746.OBV_25000	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-2152144_36	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-2152144_36	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-2152144_37	KOfam	K15046	IVNS1ABP, NS1BP; influenza virus NS1A-binding protein	NA
UHGV-2152144_37	PHROG	phrog_19111	NA	unknown function
UHGV-2152144_37	Pfam	PF13418	Galactose oxidase, central domain	Kelch_4
UHGV-2152144_37	Pfam	PF01344	Kelch motif	Kelch_1
UHGV-2152144_38	PHROG	phrog_19111	NA	unknown function
UHGV-2152144_38	eggNOG-mapper	1297617.JPJD01000034_gene670	NA	NA