UHGV-2152740

Genome information

Genome length 28,585 bps

CDS count 43

Completeness 89.58% (medium-quality)

geNomad score 0.9750

Prediction confidence Confident

Genome information
Genome ID	UHGV-2152740
vOTU ID	vOTU-008653
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029733\|Ga0245176_100009\|provirus_423440_459387
BioSample	NA
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	89.58% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9750
Virus hallmark genes (geNomad)	14
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	43.6
Jumbo phage	No

Genome content
Genome length	28,585 bps
GC content	60.75%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	43
CDS density	92.59%
Average CDS length	618.28 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2152740_1	KOfam	K14059	int; integrase	NA
UHGV-2152740_1	PHROG	phrog_1	integrase	integration and excision
UHGV-2152740_1	UniRef90	UniRef90_A0A3D1VH24	Site-specific integrase	NA
UHGV-2152740_1	eggNOG-mapper	1297617.JPJD01000022_gene1664	Phage integrase, N-terminal SAM-like domain	NA
UHGV-2152740_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2152740_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2152740_1	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-2152740_2	eggNOG-mapper	1232453.BAIF02000097_gene2773	EXOIII	NA
UHGV-2152740_2	COG	COG0272	NAD-dependent DNA ligase	NA
UHGV-2152740_3	KOfam	K02342	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	NA
UHGV-2152740_3	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-2152740_3	UniRef90	UniRef90_A0A3D1VB11	Exonuclease domain-containing protein	NA
UHGV-2152740_3	eggNOG-mapper	1408303.JNJJ01000108_gene69	3' exoribonuclease, RNase T-like	NA
UHGV-2152740_3	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-2152740_3	Pfam	PF00929	Exonuclease	RNase_T
UHGV-2152740_3	Pfam	PF00533	BRCA1 C Terminus (BRCT) domain	BRCT
UHGV-2152740_3	COG	COG0272	NAD-dependent DNA ligase	NA
UHGV-2152740_3	Structural annotation	PF00929, PF00533, MF_00157, NF005289, COG0847	NA	NA
UHGV-2152740_4	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-2152740_4	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-2152740_4	UniRef90	UniRef90_A0A3D1VDF3	LexA family transcriptional regulator	NA
UHGV-2152740_4	eggNOG-mapper	428125.CLOLEP_01832	DNA-binding helix-turn-helix protein	NA
UHGV-2152740_4	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-2152740_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2152740_4	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-2152740_4	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-2152740_4	Structural annotation	PF01381, PF00717, MF_00015, NF041951, COG1396	NA	NA
UHGV-2152740_5	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2152740_5	PHROG	phrog_7241	transcriptional regulator	transcription regulation
UHGV-2152740_5	UniRef90	UniRef90_A0A3D1VD81	XRE family transcriptional regulator	NA
UHGV-2152740_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2152740_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2152740_5	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-2152740_8	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-2152740_8	UniRef90	UniRef90_A0A3D1VA62	Transcriptional regulator	NA
UHGV-2152740_8	eggNOG-mapper	1415774.U728_1274	Helix-turn-helix XRE-family like proteins	NA
UHGV-2152740_8	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-2152740_8	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-2152740_8	Structural annotation	PF01381, MF_00535, NF040522, COG1476	NA	NA
UHGV-2152740_9	UniRef90	UniRef90_A0A3D1V9Y1	HTH_17 domain-containing protein	NA
UHGV-2152740_9	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-2152740_9	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-2152740_9	Structural annotation	PF12728, MF_01155, TIGR01764, COG3311	NA	NA
UHGV-2152740_10	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2152740_10	UniRef90	UniRef90_UPI001F33ADD3	helix-turn-helix domain-containing protein	NA
UHGV-2152740_10	eggNOG-mapper	1297617.JPJD01000031_gene2014	COG NOG34358 non supervised orthologous group	NA
UHGV-2152740_10	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-2152740_10	COG	COG3935	DNA replication protein DnaD	NA
UHGV-2152740_10	Structural annotation	PF02295, MF_01819, TIGR04176, COG3355	NA	NA
UHGV-2152740_11	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-2152740_11	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-2152740_11	UniRef90	UniRef90_A0A3D1V9Y4	DNA helicase	NA
UHGV-2152740_11	eggNOG-mapper	1007096.BAGW01000033_gene1616	DnaB-like helicase N terminal domain	NA
UHGV-2152740_11	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-2152740_11	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-2152740_11	COG	COG0305	Replicative DNA helicase	NA
UHGV-2152740_11	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-2152740_13	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-2152740_13	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-2152740_13	UniRef90	UniRef90_A0A3D1VAU9	ParA family protein	NA
UHGV-2152740_13	eggNOG-mapper	742738.HMPREF9460_00854	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	NA
UHGV-2152740_13	Pfam	PF13614	AAA domain	AAA_31
UHGV-2152740_13	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-2152740_13	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-2152740_14	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-2152740_14	PHROG	phrog_27290	NA	unknown function
UHGV-2152740_14	UniRef90	UniRef90_A0A3D1VH09	ParB domain-containing protein	NA
UHGV-2152740_14	eggNOG-mapper	693746.OBV_19860	ParB-like nuclease domain	NA
UHGV-2152740_14	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-2152740_14	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-2152740_14	Structural annotation	PF12961, PF02195, MF_02015, MF_00684, TIGR04285, NF003443, COG1475, COG3097	NA	NA
UHGV-2152740_15	PHROG	phrog_5781	NA	unknown function
UHGV-2152740_15	UniRef90	UniRef90_A0A2V2FSM6	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-2152740_15	eggNOG-mapper	1397284.AYMN01000083_gene2419	NA	NA
UHGV-2152740_15	Pfam	PF14359	NA	DUF4406
UHGV-2152740_15	COG	COG3613	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-2152740_15	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-2152740_16	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-2152740_16	UniRef90	UniRef90_A0A4U9RLZ8	NA	NA
UHGV-2152740_16	eggNOG-mapper	293826.Amet_2596	NA	NA
UHGV-2152740_16	Structural annotation	PF12643, MF_01020, TIGR03188	NA	NA
UHGV-2152740_18	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2152740_18	eggNOG-mapper	1203606.HMPREF1526_00985	NA	NA
UHGV-2152740_18	Structural annotation	PF21578, NF033538	NA	NA
UHGV-2152740_19	UniRef90	UniRef90_UPI001A9BD6FA	cysteine-rich KTR domain-containing protein	NA
UHGV-2152740_19	eggNOG-mapper	658086.HMPREF0994_02536	Cysteine-rich KTR	NA
UHGV-2152740_19	Pfam	PF14205	Cysteine-rich KTR	Cys_rich_KTR
UHGV-2152740_20	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-2152740_20	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2152740_20	UniRef90	UniRef90_A0A3D1VCB5	Restriction endonuclease	NA
UHGV-2152740_20	eggNOG-mapper	1145276.T479_20000	HNH nucleases	NA
UHGV-2152740_20	Pfam	PF01844	HNH endonuclease	HNH
UHGV-2152740_20	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2152740_21	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-2152740_21	UniRef90	UniRef90_E0E1I4	Putative phage terminase, small subunit, P27 family	NA
UHGV-2152740_21	eggNOG-mapper	596315.HMPREF0634_0388	Phage terminase, small subunit	NA
UHGV-2152740_21	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-2152740_21	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-2152740_22	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2152740_22	UniRef90	UniRef90_A0A3D1VAR5	Terminase	NA
UHGV-2152740_22	eggNOG-mapper	1226322.HMPREF1545_00113	Phage Terminase	NA
UHGV-2152740_22	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2152740_22	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2152740_22	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2152740_22	Structural annotation	PF20441, PF03354, MF_04013, TIGR01547, COG4626	NA	NA
UHGV-2152740_23	PHROG	phrog_12	portal protein	head and packaging
UHGV-2152740_23	UniRef90	UniRef90_A0A3D1VH02	Phage portal protein	NA
UHGV-2152740_23	eggNOG-mapper	1121423.JONT01000042_gene1421	Phage portal protein, HK97 family	NA
UHGV-2152740_23	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2152740_23	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-2152740_23	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2152740_23	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-2152740_24	KOfam	K06904	NA	NA
UHGV-2152740_24	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-2152740_24	UniRef90	UniRef90_A0A3D1VA27	HK97 family phage prohead protease	NA
UHGV-2152740_24	eggNOG-mapper	1235798.C817_04584	Phage prohead protease, HK97 family	NA
UHGV-2152740_24	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-2152740_24	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-2152740_24	COG	COG3740	Phage head maturation protease	NA
UHGV-2152740_24	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-2152740_25	PHROG	phrog_10	major head protein	head and packaging
UHGV-2152740_25	UniRef90	UniRef90_A0A3D1VAZ0	Phage major capsid protein	NA
UHGV-2152740_25	eggNOG-mapper	396034.A6XMJ6_9CAUD	N-acetylmuramoyl-L-alanine amidase activity	NA
UHGV-2152740_25	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2152740_25	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2152740_25	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2152740_26	PHROG	phrog_2550	NA	unknown function
UHGV-2152740_26	eggNOG-mapper	588581.Cpap_1271	NA	NA
UHGV-2152740_26	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-2152740_27	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-2152740_27	UniRef90	UniRef90_A0A3D1VD59	Phage head-tail adapter protein	NA
UHGV-2152740_27	eggNOG-mapper	913865.DOT_5630	NA	NA
UHGV-2152740_27	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2152740_28	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2152740_28	UniRef90	UniRef90_UPI00156FE9DA	HK97 gp10 family phage protein	NA
UHGV-2152740_28	eggNOG-mapper	1123311.KB904448_gene34	NA	NA
UHGV-2152740_28	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2152740_28	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-2152740_29	Structural annotation	PF05657	NA	NA
UHGV-2152740_30	PHROG	phrog_2175	protein with Ig domain	other
UHGV-2152740_30	eggNOG-mapper	1219626.HMPREF1639_07450	NA	NA
UHGV-2152740_30	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-2152740_31	eggNOG-mapper	411468.CLOSCI_00542	NA	NA
UHGV-2152740_31	Structural annotation	PF17388	NA	NA
UHGV-2152740_32	eggNOG-mapper	665956.HMPREF1032_00109	NA	NA
UHGV-2152740_33	PHROG	phrog_5755	tail length tape measure protein	tail
UHGV-2152740_33	UniRef90	UniRef90_V9HUK2	Phage tail tape measure protein, TP901 family, core region	NA
UHGV-2152740_33	eggNOG-mapper	333138.LQ50_04250	Phage tail tape measure protein	NA
UHGV-2152740_33	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-2152740_33	Structural annotation	PF10145, MF_04138, TIGR01760, COG5280	NA	NA
UHGV-2152740_34	eggNOG-mapper	411490.ANACAC_00709	phage tail	NA
UHGV-2152740_34	COG	COG4722	Phage-related protein YomH	NA
UHGV-2152740_34	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-2152740_35	PHROG	phrog_3558	tail protein	tail
UHGV-2152740_35	UniRef90	UniRef90_A0A3D1VAY1	Prophage_tail domain-containing protein	NA
UHGV-2152740_35	eggNOG-mapper	1111121.HMPREF1247_1242	Prophage endopeptidase tail	NA
UHGV-2152740_35	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-2152740_35	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-2152740_35	COG	COG4926	Phage-related protein	NA
UHGV-2152740_35	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-2152740_37	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2152740_37	PHROG	phrog_9611	endolysin	lysis
UHGV-2152740_37	UniRef90	UniRef90_R5B1Z3	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-2152740_37	eggNOG-mapper	1203606.HMPREF1526_02025	Ami_2	NA
UHGV-2152740_37	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-2152740_37	Pfam	PF00395	S-layer homology domain	SLH
UHGV-2152740_37	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-2152740_37	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-2152740_38	PHROG	phrog_1863	NA	unknown function
UHGV-2152740_38	UniRef90	UniRef90_UPI001F223E8B	hemolysin XhlA family protein	NA
UHGV-2152740_38	eggNOG-mapper	1226322.HMPREF1545_04027	NA	NA
UHGV-2152740_39	PHROG	phrog_1129	holin	lysis
UHGV-2152740_39	UniRef90	UniRef90_R5D220	Putative holin	NA
UHGV-2152740_39	eggNOG-mapper	742740.HMPREF9474_03522	NA	NA
UHGV-2152740_39	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-2152740_39	Structural annotation	PF06946	NA	NA
UHGV-2152740_40	UniRef90	UniRef90_A0A4R1QMH6	HTH cro/C1-type domain-containing protein	NA
UHGV-2152740_40	eggNOG-mapper	445972.ANACOL_00210	NA	NA
UHGV-2152740_40	Pfam	PF13412	Winged helix-turn-helix DNA-binding	HTH_24
UHGV-2152740_40	Structural annotation	PF13560, TIGR02612, COG1396	NA	NA
UHGV-2152740_43	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-2152740_43	PHROG	phrog_95	integrase	integration and excision
UHGV-2152740_43	UniRef90	UniRef90_A0A417HSQ2	Recombinase family protein	NA
UHGV-2152740_43	eggNOG-mapper	1234679.BN424_92	L COG1961 Site-specific recombinases, DNA invertase Pin homologs	NA
UHGV-2152740_43	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-2152740_43	Pfam	PF07508	Recombinase	Recombinase
UHGV-2152740_43	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2152740_43	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA