UHGV-2153756

Genome information

Genome length 30,941 bps

CDS count 57

Completeness 87.28% (medium-quality)

geNomad score 0.9724

Prediction confidence Confident

Genome information
Genome ID	UHGV-2153756
vOTU ID	vOTU-042110
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029735\|Ga0245259_100547\|provirus_1_30941
BioSample	SAMEA3449310
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	87.28% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9724
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.77
Jumbo phage	No

Genome content
Genome length	30,941 bps
GC content	28.65%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	91.11%
Average CDS length	497.05 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2153756_2	PHROG	phrog_5668	tail fiber protein	tail
UHGV-2153756_2	UniRef90	UniRef90_R7ITT1	Phage minor structural protein	NA
UHGV-2153756_2	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-2153756_2	COG	COG3209	NA	NA
UHGV-2153756_2	Structural annotation	COG4926	NA	NA
UHGV-2153756_3	PHROG	phrog_6616	tail protein	tail
UHGV-2153756_3	UniRef90	UniRef90_A0A7V8A6H9	PblB	NA
UHGV-2153756_3	eggNOG-mapper	658659.HMPREF0983_03295	NA	NA
UHGV-2153756_3	Structural annotation	PF05113, PF09327, NF033848, COG3500	NA	NA
UHGV-2153756_4	Pfam	PF20458	NA	DUF6711
UHGV-2153756_4	Structural annotation	PF20458, TIGR02126, COG4718	NA	NA
UHGV-2153756_5	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-2153756_5	eggNOG-mapper	665950.HMPREF1025_02522	Phage tail tape measure protein, TP901 family	NA
UHGV-2153756_5	COG	COG1511	NA	NA
UHGV-2153756_5	Structural annotation	PF20155, MF_04138, COG5281	NA	NA
UHGV-2153756_6	PHROG	phrog_10934	NA	unknown function
UHGV-2153756_6	UniRef90	UniRef90_C5WIE2	NA	NA
UHGV-2153756_6	eggNOG-mapper	1069533.Sinf_0760	TM2 domain	NA
UHGV-2153756_6	COG	COG2314	NA	NA
UHGV-2153756_7	PHROG	phrog_706	NA	unknown function
UHGV-2153756_7	UniRef90	UniRef90_UPI00036C8F95	bacteriophage Gp15 family protein	NA
UHGV-2153756_7	eggNOG-mapper	1151292.QEW_4528	Bacteriophage Gp15 protein	NA
UHGV-2153756_7	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-2153756_7	Structural annotation	PF06854	NA	NA
UHGV-2153756_8	PHROG	phrog_4450	NA	unknown function
UHGV-2153756_8	UniRef90	UniRef90_UPI0018AB083C	AP endonuclease	NA
UHGV-2153756_8	eggNOG-mapper	411470.RUMGNA_02225	NA	NA
UHGV-2153756_8	Pfam	PF20378	NA	DUF6673
UHGV-2153756_8	Structural annotation	PF20378	NA	NA
UHGV-2153756_9	PHROG	phrog_3099	NA	unknown function
UHGV-2153756_9	eggNOG-mapper	411468.CLOSCI_02404	NA	NA
UHGV-2153756_9	Structural annotation	PF13715, PF08813, TIGR02126, TIGR04134, COG5437	NA	NA
UHGV-2153756_10	PHROG	phrog_3266	tail completion	connector
UHGV-2153756_10	UniRef90	UniRef90_A0A355UZ60	Chloramphenicol resistance protein	NA
UHGV-2153756_10	eggNOG-mapper	642492.Clole_0825	NA	NA
UHGV-2153756_11	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2153756_11	UniRef90	UniRef90_UPI0011781EF8	minor capsid protein	NA
UHGV-2153756_11	eggNOG-mapper	642492.Clole_0824	Minor capsid protein	NA
UHGV-2153756_11	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-2153756_11	Structural annotation	PF11114	NA	NA
UHGV-2153756_12	PHROG	phrog_3366	NA	unknown function
UHGV-2153756_12	Pfam	PF20536	NA	DUF6751
UHGV-2153756_12	Structural annotation	PF20536, TIGR01563, COG5614	NA	NA
UHGV-2153756_13	PHROG	phrog_541	head-tail adaptor	connector
UHGV-2153756_14	UniRef90	UniRef90_A0A0D8J2H9	p22 coat protein 5	NA
UHGV-2153756_14	eggNOG-mapper	411471.SUBVAR_06993	NA	NA
UHGV-2153756_14	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-2153756_17	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2153756_17	UniRef90	UniRef90_K1TV07	Phage minor capsid protein 2 (Fragment)	NA
UHGV-2153756_17	eggNOG-mapper	411473.RUMCAL_01925	NA	NA
UHGV-2153756_17	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2153756_17	COG	COG2369	NA	NA
UHGV-2153756_17	Structural annotation	PF06152	NA	NA
UHGV-2153756_18	PHROG	phrog_533	portal protein	head and packaging
UHGV-2153756_18	UniRef90	UniRef90_UPI001EF94ABB	phage portal protein	NA
UHGV-2153756_18	eggNOG-mapper	1295642.H839_08289	portal protein	NA
UHGV-2153756_18	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2153756_19	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2153756_19	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-2153756_19	UniRef90	UniRef90_UPI001291DD3A	PBSX family phage terminase large subunit	NA
UHGV-2153756_19	eggNOG-mapper	1231057.AMGD01000018_gene3623	Phage terminase, large subunit	NA
UHGV-2153756_19	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-2153756_19	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-2153756_19	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2153756_19	COG	COG1783	Phage terminase large subunit	NA
UHGV-2153756_19	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2153756_20	PHROG	phrog_2412	NA	unknown function
UHGV-2153756_20	UniRef90	UniRef90_R5AAQ5	NA	NA
UHGV-2153756_20	eggNOG-mapper	1232449.BAHV02000018_gene1532	NA	NA
UHGV-2153756_21	PHROG	phrog_1233	NA	unknown function
UHGV-2153756_21	UniRef90	UniRef90_R7IWF8	Peptidase_M78 domain-containing protein	NA
UHGV-2153756_21	Structural annotation	PF13058	NA	NA
UHGV-2153756_23	PHROG	phrog_1048	NA	unknown function
UHGV-2153756_23	UniRef90	UniRef90_A0A350S1T8	NA	NA
UHGV-2153756_23	eggNOG-mapper	1280692.AUJL01000027_gene2162	NA	NA
UHGV-2153756_23	Pfam	PF11195	NA	DUF2829
UHGV-2153756_23	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-2153756_23	Structural annotation	PF11195	NA	NA
UHGV-2153756_24	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2153756_24	eggNOG-mapper	1347392.CCEZ01000005_gene1225	NA	NA
UHGV-2153756_24	Structural annotation	PF02996	NA	NA
UHGV-2153756_29	Pfam	PF09643	YopX protein	YopX
UHGV-2153756_30	PHROG	phrog_8684	NA	unknown function
UHGV-2153756_30	UniRef90	UniRef90_A0A1E4ZH76	YopX domain-containing protein	NA
UHGV-2153756_30	eggNOG-mapper	742767.HMPREF9456_02048	YopX protein	NA
UHGV-2153756_30	Pfam	PF09643	YopX protein	YopX
UHGV-2153756_30	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-2153756_36	PHROG	phrog_31463	NA	unknown function
UHGV-2153756_36	UniRef90	UniRef90_UPI001160B515	LemA family protein	NA
UHGV-2153756_37	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-2153756_37	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2153756_37	UniRef90	UniRef90_R6ZAS0	Crossover junction endodeoxyribonuclease RusA	NA
UHGV-2153756_37	eggNOG-mapper	272563.CD630_29310	Endodeoxyribonuclease RusA	NA
UHGV-2153756_37	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-2153756_37	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-2153756_37	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-2153756_38	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-2153756_38	PHROG	phrog_67	DNA methyltransferase	other
UHGV-2153756_38	UniRef90	UniRef90_A0A3E3E030	Methyltransferase	NA
UHGV-2153756_38	eggNOG-mapper	469596.HMPREF9488_00879	DNA methylase	NA
UHGV-2153756_38	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-2153756_38	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-2153756_38	COG	COG2189	Adenine specific DNA methylase Mod	NA
UHGV-2153756_38	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-2153756_40	PHROG	phrog_4973	NA	unknown function
UHGV-2153756_40	UniRef90	UniRef90_A0A843HM15	Helix-turn-helix domain-containing protein	NA
UHGV-2153756_40	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-2153756_40	Structural annotation	PF14090, NF040939, COG5625	NA	NA
UHGV-2153756_42	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-2153756_42	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-2153756_42	UniRef90	UniRef90_A0A3D1PJS7	DnaB_2 domain-containing protein	NA
UHGV-2153756_42	eggNOG-mapper	1567011.A0A0A7S128_9VIRU	calcium ion binding	NA
UHGV-2153756_42	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-2153756_42	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-2153756_43	PHROG	phrog_19415	NA	unknown function
UHGV-2153756_43	UniRef90	UniRef90_J1H1U4	NA	NA
UHGV-2153756_43	eggNOG-mapper	1105031.HMPREF1141_0552	NA	NA
UHGV-2153756_43	Pfam	PF19808	NA	DUF6291
UHGV-2153756_44	KOfam	K06412	spoVG; stage V sporulation protein G	NA
UHGV-2153756_44	UniRef90	UniRef90_Q0TMG2	Putative septation protein SpoVG	NA
UHGV-2153756_44	eggNOG-mapper	195103.CPF_2814	Could be involved in septation	NA
UHGV-2153756_44	Pfam	PF04026	SpoVG	SpoVG
UHGV-2153756_44	NCBIFam	NF009749.0	septation regulator SpoVG	NA
UHGV-2153756_44	COG	COG2088	DNA-binding protein SpoVG, cell septation regulator	NA
UHGV-2153756_44	Structural annotation	PF04026, MF_00819, NF009749, COG2088	NA	NA
UHGV-2153756_46	PHROG	phrog_7566	NA	unknown function
UHGV-2153756_47	KOfam	K07699	spo0A; two-component system, response regulator, stage 0 sporulation protein A	NA
UHGV-2153756_47	Pfam	PF08769	Sporulation initiation factor Spo0A C terminal	Spo0A_C
UHGV-2153756_47	Structural annotation	PF08769, TIGR02875	NA	NA
UHGV-2153756_49	Structural annotation	PF09114, MF_00732, TIGR04176, COG1846	NA	NA
UHGV-2153756_53	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-2153756_53	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-2153756_53	UniRef90	UniRef90_A0A1Q6K3M2	HTH cro/C1-type domain-containing protein	NA
UHGV-2153756_53	eggNOG-mapper	494416.AYXN01000040_gene2433	PFAM helix-turn-helix domain protein	NA
UHGV-2153756_53	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-2153756_53	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2153756_53	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2153756_53	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-2153756_54	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-2153756_54	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2153756_54	UniRef90	UniRef90_A0A1Q6LHM3	HTH cro/C1-type domain-containing protein	NA
UHGV-2153756_54	eggNOG-mapper	755731.Clo1100_0530	transcriptional regulator	NA
UHGV-2153756_54	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2153756_54	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2153756_54	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-2153756_57	KOfam	K14059	int; integrase	NA
UHGV-2153756_57	PHROG	phrog_1	integrase	integration and excision
UHGV-2153756_57	UniRef90	UniRef90_R6HDS7	Phage integrase	NA
UHGV-2153756_57	eggNOG-mapper	857293.CAAU_0761	Belongs to the 'phage' integrase family	NA
UHGV-2153756_57	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-2153756_57	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2153756_57	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2153756_57	Structural annotation	PF00589, MF_02055, TIGR02224, COG4974	NA	NA