UHGV-2153897

Genome information

Genome length 37,115 bps

CDS count 56

Completeness 98.26% (high-quality)

geNomad score 0.9766

Prediction confidence Confident

Genome information
Genome ID	UHGV-2153897
vOTU ID	vOTU-079770
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029746\|Ga0245173_100067\|provirus_119288_156402
BioSample	SAMEA3449225
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.26% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9766
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	26.89
Jumbo phage	No

Genome content
Genome length	37,115 bps
GC content	51.09%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	90.58%
Average CDS length	605.36 bps
tRNA count	4
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2153897_1	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-2153897_1	UniRef90	UniRef90_A0A358LHG7	XRE family transcriptional regulator	NA
UHGV-2153897_1	eggNOG-mapper	97139.C824_03539	Cro/C1-type HTH DNA-binding domain	NA
UHGV-2153897_1	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-2153897_1	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-2153897_1	Structural annotation	PF13443, NF041951, COG3655	NA	NA
UHGV-2153897_2	PHROG	phrog_289	GTP-binding domain	other
UHGV-2153897_2	UniRef90	UniRef90_UPI001BB42FF0	SLOG family protein	NA
UHGV-2153897_2	eggNOG-mapper	195253.Syn6312_2892	NA	NA
UHGV-2153897_2	Pfam	PF10686	YspA, cpYpsA-related SLOG family	YAcAr
UHGV-2153897_2	COG	COG0758	Predicted Rossmann fold nucleotide-binding protein DprA/Smf involved in DNA uptake	NA
UHGV-2153897_4	eggNOG-mapper	626523.GCWU000342_00291	NA	NA
UHGV-2153897_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2153897_4	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-2153897_6	PHROG	phrog_608	holin	lysis
UHGV-2153897_6	UniRef90	UniRef90_R6I9L8	Putative phage holin	NA
UHGV-2153897_6	eggNOG-mapper	1121472.AQWN01000009_gene420	Bacteriophage holin of superfamily 6 (Holin_LLH)	NA
UHGV-2153897_6	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-2153897_7	PHROG	phrog_7698	endolysin	lysis
UHGV-2153897_7	UniRef90	UniRef90_R6IVV6	Possible cell wall-binding protein	NA
UHGV-2153897_7	eggNOG-mapper	525254.HMPREF0072_1273	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-2153897_7	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-2153897_7	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-2153897_7	Structural annotation	PF08230	NA	NA
UHGV-2153897_8	PHROG	phrog_1863	NA	unknown function
UHGV-2153897_8	eggNOG-mapper	1235797.C816_02840	NA	NA
UHGV-2153897_9	PHROG	phrog_27545	NA	unknown function
UHGV-2153897_9	UniRef90	UniRef90_A0A2V2GQB6	Chitin-binding type-3 domain-containing protein	NA
UHGV-2153897_9	eggNOG-mapper	411471.SUBVAR_06976	NA	NA
UHGV-2153897_11	Pfam	PF13306	BspA type Leucine rich repeat region (6 copies)	LRR_5
UHGV-2153897_11	Structural annotation	PF13306	NA	NA
UHGV-2153897_12	UniRef90	UniRef90_R6HYD9	Collagen triple helix repeat protein	NA
UHGV-2153897_12	COG	COG4886	Leucine-rich repeat (LRR) protein	NA
UHGV-2153897_12	Structural annotation	PF08481	NA	NA
UHGV-2153897_14	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-2153897_14	UniRef90	UniRef90_R6GLF8	Phage minor structural protein region	NA
UHGV-2153897_14	eggNOG-mapper	1160721.RBI_I01574	Prophage endopeptidase tail	NA
UHGV-2153897_14	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-2153897_14	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-2153897_14	COG	COG4926	Phage-related protein	NA
UHGV-2153897_14	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-2153897_15	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-2153897_15	UniRef90	UniRef90_UPI00164BA811	phage tail family protein	NA
UHGV-2153897_15	eggNOG-mapper	1444306.JFZC01000034_gene2623	tail component	NA
UHGV-2153897_15	COG	COG4722	Phage-related protein YomH	NA
UHGV-2153897_15	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-2153897_16	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-2153897_16	UniRef90	UniRef90_A0A316QKN8	Phage tail protein (Fragment)	NA
UHGV-2153897_16	eggNOG-mapper	994573.T472_0201810	tape measure	NA
UHGV-2153897_16	COG	COG5185	Chromosome segregation protein NDC80, interacts with SMC proteins	NA
UHGV-2153897_16	Structural annotation	PF05537, MF_04138, COG5281	NA	NA
UHGV-2153897_17	Structural annotation	PF11836	NA	NA
UHGV-2153897_18	PHROG	phrog_88	major tail protein	tail
UHGV-2153897_18	UniRef90	UniRef90_UPI001D07B441	major tail protein	NA
UHGV-2153897_18	eggNOG-mapper	411459.RUMOBE_00930	NA	NA
UHGV-2153897_18	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-2153897_18	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-2153897_19	PHROG	phrog_78	tail terminator	connector
UHGV-2153897_19	eggNOG-mapper	1238184.CM001792_gene2512	NA	NA
UHGV-2153897_19	Structural annotation	PF05657, NF040576, COG3167	NA	NA
UHGV-2153897_20	UniRef90	UniRef90_A0A174CK72	Phage protein, HK97 gp10 family	NA
UHGV-2153897_20	eggNOG-mapper	1195236.CTER_5108	Phage protein, HK97 gp10 family	NA
UHGV-2153897_20	Structural annotation	TIGR01725	NA	NA
UHGV-2153897_21	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-2153897_21	eggNOG-mapper	457396.CSBG_01051	head-tail adaptor	NA
UHGV-2153897_21	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-2153897_21	COG	COG5614	Phage head-tail adaptor	NA
UHGV-2153897_22	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-2153897_22	UniRef90	UniRef90_UPI0006544DF9	head-tail connector protein	NA
UHGV-2153897_22	eggNOG-mapper	1274524.BSONL12_06143	Phage gp6-like head-tail connector protein	NA
UHGV-2153897_22	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-2153897_22	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-2153897_22	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-2153897_23	PHROG	phrog_10	major head protein	head and packaging
UHGV-2153897_23	UniRef90	UniRef90_UPI000C7BECD8	phage major capsid protein	NA
UHGV-2153897_23	eggNOG-mapper	1414720.CBYM010000002_gene572	Phage major capsid protein, HK97 family	NA
UHGV-2153897_23	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2153897_23	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2153897_23	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2153897_23	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2153897_24	PHROG	phrog_16951	NA	unknown function
UHGV-2153897_24	eggNOG-mapper	246199.CUS_7602	NA	NA
UHGV-2153897_24	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-2153897_25	PHROG	phrog_12	portal protein	head and packaging
UHGV-2153897_25	UniRef90	UniRef90_UPI000C7BDACF	phage portal protein	NA
UHGV-2153897_25	eggNOG-mapper	634956.Geoth_0787	Phage portal protein	NA
UHGV-2153897_25	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2153897_25	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-2153897_25	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2153897_25	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-2153897_26	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2153897_26	UniRef90	UniRef90_UPI000C7CE66A	terminase large subunit	NA
UHGV-2153897_26	eggNOG-mapper	742738.HMPREF9460_04067	Phage terminase-like protein large subunit	NA
UHGV-2153897_26	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2153897_26	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2153897_26	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2153897_26	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-2153897_27	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-2153897_27	UniRef90	UniRef90_UPI00067FA7FA	phage terminase small subunit P27 family	NA
UHGV-2153897_27	eggNOG-mapper	536232.CLM_2059	Phage terminase, small subunit	NA
UHGV-2153897_27	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-2153897_27	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-2153897_27	COG	COG3747	Phage terminase, small subunit	NA
UHGV-2153897_27	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-2153897_28	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-2153897_28	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2153897_28	UniRef90	UniRef90_UPI0006D7C695	HNH endonuclease	NA
UHGV-2153897_28	eggNOG-mapper	1508644.SFBmNL_01550	HNH endonuclease	NA
UHGV-2153897_28	Pfam	PF01844	HNH endonuclease	HNH
UHGV-2153897_28	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2153897_28	Structural annotation	PF05766	NA	NA
UHGV-2153897_29	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-2153897_29	PHROG	phrog_12862	NA	unknown function
UHGV-2153897_29	UniRef90	UniRef90_UPI000A26DFF4	site-specific DNA-methyltransferase	NA
UHGV-2153897_29	eggNOG-mapper	1120998.AUFC01000030_gene2227	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-2153897_29	PADLOC	MTase_II_00037	Type II methyltransferase	RM
UHGV-2153897_29	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-2153897_29	COG	COG0863	DNA modification methylase	NA
UHGV-2153897_29	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-2153897_30	PHROG	phrog_11237	NA	unknown function
UHGV-2153897_30	eggNOG-mapper	537013.CLOSTMETH_01096	NA	NA
UHGV-2153897_30	Structural annotation	TIGR01636	NA	NA
UHGV-2153897_32	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2153897_32	eggNOG-mapper	537013.CLOSTMETH_02141	NA	NA
UHGV-2153897_32	Structural annotation	PF21578, MF_00360	NA	NA
UHGV-2153897_33	PHROG	phrog_24518	NA	unknown function
UHGV-2153897_33	eggNOG-mapper	693746.OBV_25370	NA	NA
UHGV-2153897_37	KOfam	K18831	higA; HTH-type transcriptional regulator / antitoxin HigA	NA
UHGV-2153897_37	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2153897_37	eggNOG-mapper	537013.CLOSTMETH_02010	Helix-turn-helix XRE-family like proteins	NA
UHGV-2153897_37	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2153897_37	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-2153897_38	PHROG	phrog_15609	NA	unknown function
UHGV-2153897_38	UniRef90	UniRef90_A0A7G9WGA3	NA	NA
UHGV-2153897_38	eggNOG-mapper	641112.ACOK01000073_gene2872	NA	NA
UHGV-2153897_38	Pfam	PF11300	NA	DUF3102
UHGV-2153897_38	Structural annotation	PF11300, NF038070	NA	NA
UHGV-2153897_39	PHROG	phrog_8470	NA	unknown function
UHGV-2153897_39	UniRef90	UniRef90_A0A238ZSA1	PcfJ-like protein	NA
UHGV-2153897_39	eggNOG-mapper	649747.HMPREF0083_05326	PcfJ-like protein	NA
UHGV-2153897_39	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-2153897_39	Structural annotation	PF14284	NA	NA
UHGV-2153897_40	PHROG	phrog_7445	NA	unknown function
UHGV-2153897_40	UniRef90	UniRef90_UPI001B3C69A2	Cas9 inhibitor AcrIIA9 family protein	NA
UHGV-2153897_40	Pfam	PF14058	PcfK-like protein	PcfK
UHGV-2153897_40	Structural annotation	PF14058	NA	NA
UHGV-2153897_41	PHROG	phrog_824	NA	unknown function
UHGV-2153897_41	UniRef90	UniRef90_A0A3D5TLJ2	VRR-NUC domain-containing protein	NA
UHGV-2153897_41	eggNOG-mapper	1235792.C808_00075	VRR_NUC	NA
UHGV-2153897_41	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-2153897_41	Structural annotation	PF08774, COG1996	NA	NA
UHGV-2153897_45	PHROG	phrog_22040	NA	unknown function
UHGV-2153897_45	Structural annotation	PF07073, COG4568	NA	NA
UHGV-2153897_46	UniRef90	UniRef90_UPI001958DC75	NA	NA
UHGV-2153897_46	eggNOG-mapper	665950.HMPREF1025_02540	NA	NA
UHGV-2153897_46	Pfam	PF04448	NA	DUF551
UHGV-2153897_46	Structural annotation	PF04448	NA	NA
UHGV-2153897_48	KOfam	K01449	cwlJ, sleB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2153897_48	PHROG	phrog_18750	NA	unknown function
UHGV-2153897_48	UniRef90	UniRef90_A0A3D5TM41	Hydrolase_2 domain-containing protein	NA
UHGV-2153897_48	eggNOG-mapper	411483.FAEPRAA2165_01872	Cell wall hydrolase	NA
UHGV-2153897_48	Pfam	PF07486	Cell Wall Hydrolase	Hydrolase_2
UHGV-2153897_48	COG	COG3773	Cell wall hydrolase CwlJ, involved in spore germination	NA
UHGV-2153897_48	Structural annotation	PF07486, TIGR02869, COG3773	NA	NA
UHGV-2153897_50	PHROG	phrog_6058	NA	unknown function
UHGV-2153897_50	eggNOG-mapper	693746.OBV_19810	NA	NA
UHGV-2153897_51	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-2153897_51	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2153897_51	UniRef90	UniRef90_A0A3D5TL86	Transcriptional regulator	NA
UHGV-2153897_51	eggNOG-mapper	718252.FP2_16270	sequence-specific DNA binding	NA
UHGV-2153897_51	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2153897_51	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-2153897_51	Structural annotation	PF12844, NF041951, COG1476	NA	NA
UHGV-2153897_52	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-2153897_52	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2153897_52	UniRef90	UniRef90_A0A3D5TL51	XRE family transcriptional regulator	NA
UHGV-2153897_52	eggNOG-mapper	445972.ANACOL_01759	sequence-specific DNA binding	NA
UHGV-2153897_52	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2153897_52	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-2153897_52	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-2153897_53	PHROG	phrog_87	metallo-protease	other
UHGV-2153897_53	UniRef90	UniRef90_A0A1Y4S739	Peptidase_M78 domain-containing protein	NA
UHGV-2153897_53	eggNOG-mapper	1507.HMPREF0262_00423	IrrE N-terminal-like domain	NA
UHGV-2153897_53	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-2153897_53	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-2153897_53	Structural annotation	PF06114, COG2856	NA	NA
UHGV-2153897_54	Structural annotation	PF08797, TIGR00086	NA	NA
UHGV-2153897_55	KOfam	K14059	int; integrase	NA
UHGV-2153897_55	PHROG	phrog_1	integrase	integration and excision
UHGV-2153897_55	UniRef90	UniRef90_A0A7K4BXA9	Site-specific integrase	NA
UHGV-2153897_55	eggNOG-mapper	693746.OBV_19730	Belongs to the 'phage' integrase family	NA
UHGV-2153897_55	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2153897_55	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-2153897_55	Structural annotation	PF00589, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-2153897_56	KOfam	K05989	ramA; alpha-L-rhamnosidase [EC:3.2.1.40]	NA
UHGV-2153897_56	UniRef90	UniRef90_R6I886	Alpha-L-rhamnosidase	NA
UHGV-2153897_56	eggNOG-mapper	180332.JTGN01000005_gene2979	Alpha-L-rhamnosidase N-terminal domain protein	NA
UHGV-2153897_56	Pfam	PF08531	Alpha-L-rhamnosidase N-terminal domain	Bac_rhamnosid_N
UHGV-2153897_56	Pfam	PF05592	Bacterial alpha-L-rhamnosidase concanavalin-like domain	Bac_rhamnosid
UHGV-2153897_56	Pfam	PF17389	Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain	Bac_rhamnosid6H
UHGV-2153897_56	Pfam	PF17390	Bacterial alpha-L-rhamnosidase C-terminal domain	Bac_rhamnosid_C
UHGV-2153897_56	COG	COG3408	Glycogen debranching enzyme (alpha-1,6-glucosidase)	NA