UHGV-2154178

Genome information

Genome length 44,859 bps

CDS count 55

Completeness 99.90% (high-quality)

geNomad score 0.9678

Prediction confidence Confident

Genome information
Genome ID	UHGV-2154178
vOTU ID	vOTU-010578
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029773\|Ga0243856_1000231\|provirus_36629_85597
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	14
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9678
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	43.95
Jumbo phage	No

Genome content
Genome length	44,859 bps
GC content	42.33%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	90.12%
Average CDS length	737.46 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2154178_1	eggNOG-mapper	180332.JTGN01000007_gene3601	NA	NA
UHGV-2154178_1	Pfam	PF16526	C-terminal leucine zipper domain of cyclic nucleotide-gated channels	CLZ
UHGV-2154178_2	KOfam	K07816	E2.7.6.5; GTP pyrophosphokinase [EC:2.7.6.5]	NA
UHGV-2154178_2	PHROG	phrog_9640	NA	unknown function
UHGV-2154178_2	UniRef90	UniRef90_A0A373NEQ8	RelA_SpoT domain-containing protein	NA
UHGV-2154178_2	eggNOG-mapper	1410626.JHXB01000005_gene1329	NA	NA
UHGV-2154178_2	Pfam	PF04607	Region found in RelA / SpoT proteins	RelA_SpoT
UHGV-2154178_2	COG	COG2357	ppGpp synthetase catalytic domain (RelA/SpoT-type nucleotidyltranferase)	NA
UHGV-2154178_3	KOfam	K14059	int; integrase	NA
UHGV-2154178_3	PHROG	phrog_1	integrase	integration and excision
UHGV-2154178_3	UniRef90	UniRef90_A0A1C5Z1D0	Tyrosine recombinase XerC	NA
UHGV-2154178_3	eggNOG-mapper	1280698.AUJS01000007_gene999	Phage integrase family	NA
UHGV-2154178_3	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2154178_3	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2154178_3	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-2154178_4	PHROG	phrog_215	structural protein with Ig domain	head and packaging
UHGV-2154178_4	UniRef90	UniRef90_UPI001D0F2C35	Ig-like domain-containing protein	NA
UHGV-2154178_4	eggNOG-mapper	877411.JMMA01000002_gene2577	Fibronectin type 3 domain	NA
UHGV-2154178_4	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-2154178_4	COG	COG3291	NA	NA
UHGV-2154178_6	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2154178_6	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-2154178_6	UniRef90	UniRef90_UPI0018A9CBC8	helix-turn-helix domain-containing protein	NA
UHGV-2154178_6	eggNOG-mapper	887325.HMPREF0381_0352	Helix-turn-helix XRE-family like proteins	NA
UHGV-2154178_6	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-2154178_6	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2154178_6	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-2154178_12	UniRef90	UniRef90_UPI00129DCFE7	HTH domain-containing protein	NA
UHGV-2154178_12	Structural annotation	PF20063	NA	NA
UHGV-2154178_16	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2154178_16	eggNOG-mapper	1280698.AUJS01000007_gene1013	NA	NA
UHGV-2154178_16	Structural annotation	PF01446	NA	NA
UHGV-2154178_17	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-2154178_17	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-2154178_17	UniRef90	UniRef90_A0A417CPS0	RNase H type-1 domain-containing protein	NA
UHGV-2154178_17	eggNOG-mapper	411459.RUMOBE_00952	RNase H	NA
UHGV-2154178_17	Pfam	PF00075	RNase H	RNase_H
UHGV-2154178_17	COG	COG0328	Ribonuclease HI	NA
UHGV-2154178_17	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-2154178_18	eggNOG-mapper	411459.RUMOBE_00951	NA	NA
UHGV-2154178_19	PHROG	phrog_8470	NA	unknown function
UHGV-2154178_19	UniRef90	UniRef90_UPI001D006C08	PcfJ domain-containing protein	NA
UHGV-2154178_19	eggNOG-mapper	999413.HMPREF1094_04705	PcfJ-like protein	NA
UHGV-2154178_19	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-2154178_19	Structural annotation	PF14284	NA	NA
UHGV-2154178_20	PHROG	phrog_15077	NA	unknown function
UHGV-2154178_20	UniRef90	UniRef90_A5ZPN2	NA	NA
UHGV-2154178_20	eggNOG-mapper	411459.RUMOBE_00949	NA	NA
UHGV-2154178_20	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-2154178_20	Structural annotation	PF11300, NF038070	NA	NA
UHGV-2154178_21	PHROG	phrog_7566	NA	unknown function
UHGV-2154178_21	eggNOG-mapper	665950.HMPREF1025_02547	NA	NA
UHGV-2154178_23	PHROG	phrog_954	DNA methyltransferase	other
UHGV-2154178_23	UniRef90	UniRef90_UPI00189C6FDE	methyltransferase	NA
UHGV-2154178_23	eggNOG-mapper	1280698.AUJS01000007_gene1028	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA	NA
UHGV-2154178_23	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-2154178_23	Pfam	PF08241	Methyltransferase domain	Methyltransf_11
UHGV-2154178_23	COG	COG1092	23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI	NA
UHGV-2154178_23	Structural annotation	PF05148, MF_03044, NF033398, COG1041	NA	NA
UHGV-2154178_25	eggNOG-mapper	457412.RSAG_01159	NA	NA
UHGV-2154178_26	UniRef90	UniRef90_K1T9Q6	NA	NA
UHGV-2154178_29	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2154178_29	UniRef90	UniRef90_A0A416Q281	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-2154178_29	eggNOG-mapper	1235798.C817_03486	NA	NA
UHGV-2154178_29	Structural annotation	PF02996	NA	NA
UHGV-2154178_30	eggNOG-mapper	97139.C824_01317	NA	NA
UHGV-2154178_31	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-2154178_31	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-2154178_31	UniRef90	UniRef90_UPI001D08595A	terminase small subunit	NA
UHGV-2154178_31	eggNOG-mapper	478749.BRYFOR_07604	terminase, small subunit	NA
UHGV-2154178_31	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-2154178_31	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-2154178_31	COG	COG3728	Phage terminase, small subunit	NA
UHGV-2154178_31	Structural annotation	PF03592, COG3728	NA	NA
UHGV-2154178_32	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2154178_32	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-2154178_32	UniRef90	UniRef90_A0A352BM03	PBSX family phage terminase large subunit	NA
UHGV-2154178_32	eggNOG-mapper	411902.CLOBOL_00139	Phage terminase, large subunit, PBSX family	NA
UHGV-2154178_32	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-2154178_32	COG	COG1783	Phage terminase large subunit	NA
UHGV-2154178_32	Structural annotation	PF04466, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-2154178_33	PHROG	phrog_533	portal protein	head and packaging
UHGV-2154178_33	UniRef90	UniRef90_UPI00189F661F	phage portal protein	NA
UHGV-2154178_33	eggNOG-mapper	999413.HMPREF1094_00220	phage minor capsid protein	NA
UHGV-2154178_33	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2154178_33	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2154178_34	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2154178_34	UniRef90	UniRef90_UPI001C03686D	phage minor capsid protein	NA
UHGV-2154178_34	eggNOG-mapper	1235799.C818_04219	Phage minor capsid protein 2	NA
UHGV-2154178_34	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2154178_34	COG	COG2369	NA	NA
UHGV-2154178_34	Structural annotation	PF06152	NA	NA
UHGV-2154178_35	PHROG	phrog_15041	NA	unknown function
UHGV-2154178_35	eggNOG-mapper	1304866.K413DRAFT_0808	NA	NA
UHGV-2154178_35	Structural annotation	PF10827	NA	NA
UHGV-2154178_36	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-2154178_36	UniRef90	UniRef90_R6R5K5	Protein 64 protein	NA
UHGV-2154178_36	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-2154178_37	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-2154178_37	UniRef90	UniRef90_UPI001D080C73	phage scaffolding protein	NA
UHGV-2154178_37	eggNOG-mapper	411902.CLOBOL_00135	COG NOG36366 non supervised orthologous group	NA
UHGV-2154178_37	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-2154178_37	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-2154178_38	PHROG	phrog_10	major head protein	head and packaging
UHGV-2154178_38	UniRef90	UniRef90_UPI00189A09FD	phage major capsid protein	NA
UHGV-2154178_38	eggNOG-mapper	411902.CLOBOL_00134	Phage capsid family	NA
UHGV-2154178_38	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2154178_38	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2154178_38	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2154178_38	Structural annotation	PF05065, PF13620, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2154178_39	PHROG	phrog_541	head-tail adaptor	connector
UHGV-2154178_39	eggNOG-mapper	1304866.K413DRAFT_3039	NA	NA
UHGV-2154178_40	PHROG	phrog_3366	NA	unknown function
UHGV-2154178_40	eggNOG-mapper	999411.HMPREF1092_03319	NA	NA
UHGV-2154178_40	Pfam	PF20536	NA	DUF6751
UHGV-2154178_40	Structural annotation	PF20536	NA	NA
UHGV-2154178_41	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2154178_41	UniRef90	UniRef90_UPI001D084F02	minor capsid protein	NA
UHGV-2154178_41	eggNOG-mapper	1449050.JNLE01000003_gene3886	NA	NA
UHGV-2154178_41	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-2154178_41	Structural annotation	PF11114	NA	NA
UHGV-2154178_42	PHROG	phrog_3266	tail completion	connector
UHGV-2154178_42	UniRef90	UniRef90_UPI001C86C58C	chloramphenicol resistance protein	NA
UHGV-2154178_42	eggNOG-mapper	663278.Ethha_0098	NA	NA
UHGV-2154178_42	Structural annotation	PF12691	NA	NA
UHGV-2154178_43	PHROG	phrog_3099	NA	unknown function
UHGV-2154178_43	eggNOG-mapper	476272.RUMHYD_01782	NA	NA
UHGV-2154178_43	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2154178_44	PHROG	phrog_11299	NA	unknown function
UHGV-2154178_44	eggNOG-mapper	33035.JPJF01000106_gene3125	NA	NA
UHGV-2154178_45	PHROG	phrog_706	NA	unknown function
UHGV-2154178_45	UniRef90	UniRef90_UPI00189B451E	Gp15 family bacteriophage protein	NA
UHGV-2154178_45	eggNOG-mapper	476272.RUMHYD_01784	Bacteriophage Gp15 protein	NA
UHGV-2154178_45	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-2154178_45	Structural annotation	PF06854	NA	NA
UHGV-2154178_46	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-2154178_46	PHROG	phrog_28918	NA	unknown function
UHGV-2154178_46	UniRef90	UniRef90_A0A1C5P271	Chromosome segregation protein	NA
UHGV-2154178_46	eggNOG-mapper	411459.RUMOBE_01384	phage tail tape measure protein	NA
UHGV-2154178_46	COG	COG5412	Phage-related protein	NA
UHGV-2154178_47	PHROG	phrog_1194	NA	unknown function
UHGV-2154178_47	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-2154178_48	PHROG	phrog_6616	tail protein	tail
UHGV-2154178_48	UniRef90	UniRef90_R5QUN9	Peptidase S74 domain-containing protein	NA
UHGV-2154178_48	eggNOG-mapper	33035.JPJF01000043_gene1002	NA	NA
UHGV-2154178_48	Structural annotation	PF05113, PF18957, PF16407, NF033848, NF011782, COG4379	NA	NA
UHGV-2154178_49	PHROG	phrog_18444	NA	unknown function
UHGV-2154178_49	UniRef90	UniRef90_UPI00156E9A45	peptide chain release factor 2	NA
UHGV-2154178_50	KOfam	K10804	tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]	NA
UHGV-2154178_50	PHROG	phrog_5240	tail fiber protein	tail
UHGV-2154178_50	eggNOG-mapper	1136177.KCA1_2885	GDSL-like Lipase/Acylhydrolase family	NA
UHGV-2154178_50	Pfam	PF13472	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
UHGV-2154178_51	UniRef90	UniRef90_UPI0018AC3B89	M48 family metalloprotease	NA
UHGV-2154178_52	Structural annotation	COG1996	NA	NA
UHGV-2154178_53	Structural annotation	COG1996	NA	NA
UHGV-2154178_54	PHROG	phrog_199	holin	lysis
UHGV-2154178_54	UniRef90	UniRef90_A0A417CRV5	Holin	NA
UHGV-2154178_54	eggNOG-mapper	411460.RUMTOR_02100	NA	NA
UHGV-2154178_54	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-2154178_54	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-2154178_54	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-2154178_55	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2154178_55	PHROG	phrog_1794	amidase	lysis
UHGV-2154178_55	UniRef90	UniRef90_A0A173WJQ4	N-acetylmuramoyl-L-alanine amidase CwlH	NA
UHGV-2154178_55	eggNOG-mapper	478749.BRYFOR_07564	n-acetylmuramoyl-l-alanine amidase	NA
UHGV-2154178_55	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-2154178_55	COG	COG3087	Cell division protein FtsN	NA
UHGV-2154178_55	Structural annotation	PF01510, PF18342, MF_04111, NF008758, COG5632	NA	NA