UHGV-2156702

Genome information

Genome length 56,023 bps

CDS count 72

Completeness 97.91% (high-quality)

geNomad score 0.9801

Prediction confidence Confident

Genome information
Genome ID	UHGV-2156702
vOTU ID	vOTU-009215
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029720\|Ga0245229_1000476\|provirus_1_56023
BioSample	SAMEA3449281
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.91% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9801
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	55.43
Jumbo phage	No

Genome content
Genome length	56,023 bps
GC content	51.80%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	72
CDS density	90.68%
Average CDS length	708.79 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2156702_1	eggNOG-mapper	693746.OBV_12630	BlaR1 peptidase M56	NA
UHGV-2156702_1	COG	COG4219	Signal transducer regulating beta-lactamase production, contains metallopeptidase domain	NA
UHGV-2156702_3	UniRef90	UniRef90_R5ITJ1	Spo0A_C domain-containing protein	NA
UHGV-2156702_3	Pfam	PF08769	Sporulation initiation factor Spo0A C terminal	Spo0A_C
UHGV-2156702_5	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-2156702_5	PHROG	phrog_95	integrase	integration and excision
UHGV-2156702_5	UniRef90	UniRef90_A0A3D5WLD1	Recombinase family protein	NA
UHGV-2156702_5	eggNOG-mapper	693746.OBV_36270	Resolvase, N terminal domain	NA
UHGV-2156702_5	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-2156702_5	Pfam	PF07508	Recombinase	Recombinase
UHGV-2156702_5	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-2156702_5	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2156702_5	Structural annotation	PF07508, PF00239, PF18822, NF041201, COG1961	NA	NA
UHGV-2156702_6	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-2156702_6	PHROG	phrog_95	integrase	integration and excision
UHGV-2156702_6	UniRef90	UniRef90_A0A3D5IA24	Recombinase family protein	NA
UHGV-2156702_6	eggNOG-mapper	445972.ANACOL_03320	NA	NA
UHGV-2156702_6	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-2156702_6	Pfam	PF07508	Recombinase	Recombinase
UHGV-2156702_6	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-2156702_6	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2156702_6	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-2156702_7	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2156702_7	UniRef90	UniRef90_A0A6L5T8M1	Helix-turn-helix domain-containing protein	NA
UHGV-2156702_7	eggNOG-mapper	1154757.Q5C_02965	Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators	NA
UHGV-2156702_7	Pfam	PF07022	Bacteriophage CI repressor helix-turn-helix domain	Phage_CI_repr
UHGV-2156702_7	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2156702_7	Structural annotation	PF12844, NF041951, COG3655	NA	NA
UHGV-2156702_10	PHROG	phrog_22695	NA	unknown function
UHGV-2156702_10	eggNOG-mapper	693746.OBV_01880	NA	NA
UHGV-2156702_11	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-2156702_11	UniRef90	UniRef90_A0A3D5I8Y1	NA	NA
UHGV-2156702_11	eggNOG-mapper	1203606.HMPREF1526_00234	NA	NA
UHGV-2156702_11	Pfam	PF10926	NA	DUF2800
UHGV-2156702_11	COG	COG2887	RecB family exonuclease	NA
UHGV-2156702_11	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-2156702_14	eggNOG-mapper	720554.Clocl_3035	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant	NA
UHGV-2156702_14	Pfam	PF02511	Thymidylate synthase complementing protein	Thy1
UHGV-2156702_14	COG	COG1351	Thymidylate synthase ThyX, FAD-dependent family	NA
UHGV-2156702_16	PHROG	phrog_474	phosphofructokinase	other
UHGV-2156702_16	UniRef90	UniRef90_R8W3X8	NA	NA
UHGV-2156702_16	eggNOG-mapper	1203606.HMPREF1526_00237	NA	NA
UHGV-2156702_16	Pfam	PF19905	NA	DUF6378
UHGV-2156702_16	Structural annotation	PF19905	NA	NA
UHGV-2156702_18	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-2156702_18	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2156702_18	UniRef90	UniRef90_C9LP80	Helicase C-terminal domain protein	NA
UHGV-2156702_18	eggNOG-mapper	592028.GCWU000321_01359	DEAD-like helicases superfamily	NA
UHGV-2156702_18	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-2156702_18	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-2156702_18	Structural annotation	PF18766, PF16203, MF_01821, TIGR04095, COG0553	NA	NA
UHGV-2156702_19	KOfam	K24451	zim; modification methylase	NA
UHGV-2156702_19	PHROG	phrog_67	DNA methyltransferase	other
UHGV-2156702_19	UniRef90	UniRef90_UPI000422F384	site-specific DNA-methyltransferase	NA
UHGV-2156702_19	eggNOG-mapper	1120971.AUCA01000053_gene371	DNA methylase	NA
UHGV-2156702_19	PADLOC	MTase_II_00139	Type II methyltransferase	RM
UHGV-2156702_19	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-2156702_19	COG	COG0863	DNA modification methylase	NA
UHGV-2156702_19	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-2156702_20	PHROG	phrog_24386	NA	unknown function
UHGV-2156702_20	UniRef90	UniRef90_A0A2K9V2Y7	Polynucleotide kinase	NA
UHGV-2156702_20	eggNOG-mapper	665956.HMPREF1032_00133	phosphatase activity	NA
UHGV-2156702_20	COG	COG0561	Hydroxymethylpyrimidine pyrophosphatase and other HAD family phosphatases	NA
UHGV-2156702_20	Structural annotation	TIGR01689, COG0241	NA	NA
UHGV-2156702_23	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-2156702_23	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-2156702_23	UniRef90	UniRef90_A0A6L5T8P0	Ribonuclease H	NA
UHGV-2156702_23	eggNOG-mapper	709032.Sulku_2517	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	NA
UHGV-2156702_23	Pfam	PF00075	RNase H	RNase_H
UHGV-2156702_23	COG	COG0328	Ribonuclease HI	NA
UHGV-2156702_23	Structural annotation	PF00075, PF13412, MF_00042, NF001236, COG0328	NA	NA
UHGV-2156702_24	PHROG	phrog_6568	NA	unknown function
UHGV-2156702_24	eggNOG-mapper	665950.HMPREF1025_01980	NA	NA
UHGV-2156702_26	PHROG	phrog_256	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2156702_26	UniRef90	UniRef90_A0A6L5T7A5	Virulence-associated protein E	NA
UHGV-2156702_26	eggNOG-mapper	1203606.HMPREF1526_00242	virulence-associated E family protein	NA
UHGV-2156702_26	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-2156702_26	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-2156702_26	Structural annotation	PF05272, MF_04000, NF005477, NF040562, COG5545	NA	NA
UHGV-2156702_27	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2156702_27	UniRef90	UniRef90_A0A6L5T7N7	VRR-NUC domain-containing protein	NA
UHGV-2156702_27	eggNOG-mapper	411473.RUMCAL_00899	VRR_NUC	NA
UHGV-2156702_27	Structural annotation	PF08774, MF_01490, NF040854, COG1591	NA	NA
UHGV-2156702_28	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-2156702_28	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2156702_28	UniRef90	UniRef90_A0A6L5T7C5	ATP-dependent helicase	NA
UHGV-2156702_28	eggNOG-mapper	1203606.HMPREF1526_00244	snf2 family	NA
UHGV-2156702_28	PADLOC	DpdE_00010	DpdE	DPD
UHGV-2156702_28	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-2156702_28	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-2156702_28	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-2156702_28	Structural annotation	PF13872, PF16203, MF_01821, NF041790, COG0553	NA	NA
UHGV-2156702_29	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2156702_29	UniRef90	UniRef90_UPI001D05F87A	RNA polymerase subunit sigma-24	NA
UHGV-2156702_29	eggNOG-mapper	1235835.C814_01174	NA	NA
UHGV-2156702_29	Structural annotation	PF07374	NA	NA
UHGV-2156702_30	PHROG	phrog_8680	NA	unknown function
UHGV-2156702_30	UniRef90	UniRef90_A0A6L5T7C3	NA	NA
UHGV-2156702_30	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-2156702_30	Pfam	PF14386	NA	DUF4417
UHGV-2156702_30	Structural annotation	PF14386	NA	NA
UHGV-2156702_31	Structural annotation	PF03496, MF_04142, NF040688	NA	NA
UHGV-2156702_35	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-2156702_35	UniRef90	UniRef90_UPI001F487344	DNA-packaging protein	NA
UHGV-2156702_35	eggNOG-mapper	397290.C810_05185	DNA-packaging protein gp3	NA
UHGV-2156702_35	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-2156702_36	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2156702_36	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-2156702_36	UniRef90	UniRef90_A0A6L5T7D2	PBSX family phage terminase large subunit	NA
UHGV-2156702_36	eggNOG-mapper	536233.CLO_0881	Phage terminase, large subunit, PBSX family	NA
UHGV-2156702_36	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-2156702_36	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-2156702_36	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2156702_36	COG	COG1783	Phage terminase large subunit	NA
UHGV-2156702_36	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2156702_37	PHROG	phrog_1233	NA	unknown function
UHGV-2156702_37	UniRef90	UniRef90_UPI001C39EFB9	Dienelactone hydrolase family protein	NA
UHGV-2156702_37	eggNOG-mapper	357809.Cphy_2967	NA	NA
UHGV-2156702_38	PHROG	phrog_9078	NA	unknown function
UHGV-2156702_38	UniRef90	UniRef90_UPI000F7B0E5B	TRAM domain-containing protein	NA
UHGV-2156702_38	eggNOG-mapper	1506994.JNLQ01000002_gene656	NA	NA
UHGV-2156702_38	Structural annotation	PF11948, MF_01959, NF009637, COG2332	NA	NA
UHGV-2156702_40	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-2156702_40	UniRef90	UniRef90_UPI001C118286	Bro-N domain-containing protein	NA
UHGV-2156702_40	eggNOG-mapper	1399942.U3PCU6_9CAUD	DNA binding	NA
UHGV-2156702_40	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-2156702_40	Structural annotation	PF02498, TIGR02681, COG3617	NA	NA
UHGV-2156702_41	PHROG	phrog_533	portal protein	head and packaging
UHGV-2156702_41	UniRef90	UniRef90_A0A6L5T8J5	Phage portal protein	NA
UHGV-2156702_41	eggNOG-mapper	642492.Clole_0815	NA	NA
UHGV-2156702_41	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2156702_41	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2156702_42	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2156702_42	UniRef90	UniRef90_A0A136WBX5	Phage minor capsid protein 2	NA
UHGV-2156702_42	eggNOG-mapper	693746.OBV_18050	Phage minor capsid protein 2	NA
UHGV-2156702_42	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2156702_42	COG	COG2369	NA	NA
UHGV-2156702_42	Structural annotation	PF06152	NA	NA
UHGV-2156702_43	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-2156702_43	eggNOG-mapper	665956.HMPREF1032_03067	Phage minor structural protein GP20	NA
UHGV-2156702_44	PHROG	phrog_422	major head protein	head and packaging
UHGV-2156702_44	UniRef90	UniRef90_A0A488ACU7	Major capsid protein	NA
UHGV-2156702_44	eggNOG-mapper	1411095.X5J9Z5_9CAUD	NA	NA
UHGV-2156702_44	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-2156702_45	UniRef90	UniRef90_A0A8J6J3F8	Cadherin-like beta sandwich domain-containing protein	NA
UHGV-2156702_45	eggNOG-mapper	1235792.C808_00086	Phage capsid family	NA
UHGV-2156702_45	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-2156702_45	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2156702_45	Structural annotation	PF12733	NA	NA
UHGV-2156702_46	PHROG	phrog_541	head-tail adaptor	connector
UHGV-2156702_47	PHROG	phrog_3366	NA	unknown function
UHGV-2156702_47	eggNOG-mapper	1120746.CCNL01000014_gene2099	NA	NA
UHGV-2156702_47	Pfam	PF20536	NA	DUF6751
UHGV-2156702_47	Structural annotation	PF20536, TIGR01563, COG5614	NA	NA
UHGV-2156702_48	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2156702_48	UniRef90	UniRef90_UPI001958E7C1	minor capsid protein	NA
UHGV-2156702_48	eggNOG-mapper	665956.HMPREF1032_03062	Minor capsid protein	NA
UHGV-2156702_48	Structural annotation	PF11114	NA	NA
UHGV-2156702_49	PHROG	phrog_3266	tail completion	connector
UHGV-2156702_49	UniRef90	UniRef90_A0A355UZ60	Chloramphenicol resistance protein	NA
UHGV-2156702_49	eggNOG-mapper	545697.HMPREF0216_02854	NA	NA
UHGV-2156702_49	Structural annotation	PF12691	NA	NA
UHGV-2156702_50	PHROG	phrog_3099	NA	unknown function
UHGV-2156702_50	eggNOG-mapper	33035.JPJF01000106_gene3126	NA	NA
UHGV-2156702_50	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2156702_51	PHROG	phrog_11299	NA	unknown function
UHGV-2156702_51	eggNOG-mapper	1449050.JNLE01000003_gene3883	NA	NA
UHGV-2156702_52	PHROG	phrog_706	NA	unknown function
UHGV-2156702_52	UniRef90	UniRef90_A0A1H7MNA7	Bacteriophage Gp15 protein	NA
UHGV-2156702_52	eggNOG-mapper	411902.CLOBOL_00127	NA	NA
UHGV-2156702_52	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-2156702_52	Structural annotation	PF06854	NA	NA
UHGV-2156702_53	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-2156702_53	UniRef90	UniRef90_A0A1H7MQ92	Phage-related protein	NA
UHGV-2156702_53	eggNOG-mapper	1304866.K413DRAFT_3046	NA	NA
UHGV-2156702_53	COG	COG5283	Phage-related tail protein	NA
UHGV-2156702_54	PHROG	phrog_1194	NA	unknown function
UHGV-2156702_54	eggNOG-mapper	1211844.CBLM010000023_gene979	NA	NA
UHGV-2156702_54	Structural annotation	PF20458, TIGR02126, COG5437	NA	NA
UHGV-2156702_55	PHROG	phrog_6616	tail protein	tail
UHGV-2156702_55	UniRef90	UniRef90_UPI00195E70AD	tail fiber domain-containing protein	NA
UHGV-2156702_55	eggNOG-mapper	1226322.HMPREF1545_00783	Chaperone of endosialidase	NA
UHGV-2156702_55	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-2156702_57	PHROG	phrog_24896	NA	unknown function
UHGV-2156702_57	UniRef90	UniRef90_UPI00164C79DA	CotH kinase family protein	NA
UHGV-2156702_57	eggNOG-mapper	657322.FPR_22010	NA	NA
UHGV-2156702_57	Pfam	PF19789	NA	DUF6273
UHGV-2156702_57	Structural annotation	PF08757, PF19789, PF00354, PF17790, PF17166, PF16967, MF_04116, NF033188, TIGR04216, COG5337, COG1470	NA	NA
UHGV-2156702_58	PHROG	phrog_4105	NA	unknown function
UHGV-2156702_58	eggNOG-mapper	592026.GCWU0000282_003290	NA	NA
UHGV-2156702_60	PHROG	phrog_13256	NA	unknown function
UHGV-2156702_60	eggNOG-mapper	883114.HMPREF9709_01177	NA	NA
UHGV-2156702_61	PHROG	phrog_774	NA	unknown function
UHGV-2156702_61	UniRef90	UniRef90_A0A8F1B624	NA	NA
UHGV-2156702_61	eggNOG-mapper	1042156.CXIVA_01820	NA	NA
UHGV-2156702_62	UniRef90	UniRef90_A0A358M2Y7	PG_binding_1 domain-containing protein	NA
UHGV-2156702_62	eggNOG-mapper	525254.HMPREF0072_1273	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-2156702_62	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-2156702_62	Structural annotation	NF033743	NA	NA
UHGV-2156702_65	PHROG	phrog_1076	FmdB-like transcriptional regulator	transcription regulation
UHGV-2156702_65	UniRef90	UniRef90_R6LWP8	LPD18 domain-containing protein	NA
UHGV-2156702_65	eggNOG-mapper	693746.OBV_p-00470	Zn peptidase	NA
UHGV-2156702_65	Pfam	PF18832	Large polyvalent protein-associated domain 18	LPD18
UHGV-2156702_65	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-2156702_66	PHROG	phrog_335	phosphatase	other
UHGV-2156702_66	UniRef90	UniRef90_A0A6L5T7H2	Appr-1-p processing protein	NA
UHGV-2156702_66	eggNOG-mapper	1007103.AFHW01000153_gene934	Macro domain	NA
UHGV-2156702_66	PADLOC	darG	NA	NA
UHGV-2156702_66	Pfam	PF01661	Macro domain	Macro
UHGV-2156702_66	COG	COG2110	O-acetyl-ADP-ribose deacetylase (regulator of RNase III), contains Macro domain	NA
UHGV-2156702_66	Structural annotation	PF20016, MF_01205, NF001666, COG2110	NA	NA
UHGV-2156702_67	Structural annotation	PF21662, NF038178, COG2882	NA	NA
UHGV-2156702_68	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-2156702_68	UniRef90	UniRef90_A0A412AV49	Restriction alleviation protein, Lar family	NA
UHGV-2156702_68	eggNOG-mapper	97139.C824_00027	Restriction alleviation protein Lar	NA
UHGV-2156702_68	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-2156702_68	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-2156702_68	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-2156702_68	Structural annotation	PF14354, TIGR03655	NA	NA