UHGV-2156826

Genome information

Genome length 34,138 bps

CDS count 50

Completeness 99.90% (high-quality)

geNomad score 0.9752

Prediction confidence Confident

Genome information
Genome ID	UHGV-2156826
vOTU ID	vOTU-059608
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029743\|Ga0245246_100012\|provirus_49963_84100
BioSample	SAMEA3449297
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9752
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.93
Jumbo phage	No

Genome content
Genome length	34,138 bps
GC content	42.42%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	94.92%
Average CDS length	653.04 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2156826_3	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2156826_3	PHROG	phrog_435	endolysin	lysis
UHGV-2156826_3	UniRef90	UniRef90_A0A810PUG7	SPOR domain-containing protein	NA
UHGV-2156826_3	eggNOG-mapper	1246484.D479_19733	Ami_3	NA
UHGV-2156826_3	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-2156826_3	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-2156826_3	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2156826_3	Structural annotation	PF01520, PF01471, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-2156826_4	PHROG	phrog_263	holin	lysis
UHGV-2156826_4	UniRef90	UniRef90_A0A350XYL1	Holin	NA
UHGV-2156826_4	eggNOG-mapper	1158607.UAU_01779	SPP1 phage holin	NA
UHGV-2156826_4	Pfam	PF04688	SPP1 phage holin	Holin_SPP1
UHGV-2156826_4	NCBIFam	TIGR01592.1	phage holin	NA
UHGV-2156826_4	Structural annotation	PF04688, TIGR01592	NA	NA
UHGV-2156826_5	PHROG	phrog_1863	NA	unknown function
UHGV-2156826_5	eggNOG-mapper	718252.FP2_04900	NA	NA
UHGV-2156826_7	Pfam	PF00149	Calcineurin-like phosphoesterase	Metallophos
UHGV-2156826_10	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-2156826_10	UniRef90	UniRef90_A0A413DNC1	Prophage_tail domain-containing protein	NA
UHGV-2156826_10	eggNOG-mapper	1160721.RBI_I01574	Prophage endopeptidase tail	NA
UHGV-2156826_10	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-2156826_10	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-2156826_10	COG	COG4926	Phage-related protein	NA
UHGV-2156826_11	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-2156826_11	UniRef90	UniRef90_R6GVG8	Phage putative tail component N-domain protein	NA
UHGV-2156826_11	eggNOG-mapper	1160721.RBI_I01575	Phage tail protein	NA
UHGV-2156826_11	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-2156826_11	COG	COG4722	Phage-related protein YomH	NA
UHGV-2156826_11	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-2156826_12	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-2156826_12	UniRef90	UniRef90_A0A373CK98	PblA (Fragment)	NA
UHGV-2156826_12	eggNOG-mapper	411470.RUMGNA_02076	Phage tail tape measure protein, TP901 family	NA
UHGV-2156826_12	COG	COG5283	Phage-related tail protein	NA
UHGV-2156826_12	Structural annotation	PF05537, MF_04138, COG5281	NA	NA
UHGV-2156826_13	Structural annotation	PF11836	NA	NA
UHGV-2156826_14	PHROG	phrog_88	major tail protein	tail
UHGV-2156826_14	UniRef90	UniRef90_A5ZPL3	Phage major tail protein, phi13 family	NA
UHGV-2156826_14	eggNOG-mapper	411459.RUMOBE_00930	NA	NA
UHGV-2156826_14	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-2156826_15	eggNOG-mapper	1216932.CM240_0622	High confidence in function and specificity	NA
UHGV-2156826_15	Structural annotation	PF05657, NF040576, COG3167	NA	NA
UHGV-2156826_16	UniRef90	UniRef90_A0A174CK72	Phage protein, HK97 gp10 family	NA
UHGV-2156826_16	eggNOG-mapper	97139.C824_05967	Phage protein, HK97 gp10 family	NA
UHGV-2156826_16	Structural annotation	TIGR01725	NA	NA
UHGV-2156826_17	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-2156826_17	eggNOG-mapper	1094508.Tsac_2422	Phage head-tail joining protein	NA
UHGV-2156826_17	COG	COG5614	Phage head-tail adaptor	NA
UHGV-2156826_17	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2156826_18	PHROG	phrog_5223	neck protein	connector
UHGV-2156826_18	UniRef90	UniRef90_B6W9Y5	Putative phage DNA packaging protein	NA
UHGV-2156826_18	eggNOG-mapper	561177.ANHYDRO_01411	NA	NA
UHGV-2156826_18	Structural annotation	TIGR01560	NA	NA
UHGV-2156826_19	PHROG	phrog_10	major head protein	head and packaging
UHGV-2156826_19	UniRef90	UniRef90_A0A1C5W5F9	Phage major capsid protein, HK97 family	NA
UHGV-2156826_19	eggNOG-mapper	742740.HMPREF9474_04304	Phage capsid family	NA
UHGV-2156826_19	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2156826_19	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2156826_19	Structural annotation	PF05065, PF09032, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2156826_20	KOfam	K06904	NA	NA
UHGV-2156826_20	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-2156826_20	UniRef90	UniRef90_A0A2V2GKJ3	HK97 family phage prohead protease	NA
UHGV-2156826_20	eggNOG-mapper	1321814.HMPREF9089_00929	Caudovirus prohead serine protease	NA
UHGV-2156826_20	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-2156826_20	COG	COG3740	Phage head maturation protease	NA
UHGV-2156826_20	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-2156826_21	PHROG	phrog_12	portal protein	head and packaging
UHGV-2156826_21	UniRef90	UniRef90_A0A2V2GK98	Portal protein	NA
UHGV-2156826_21	eggNOG-mapper	742740.HMPREF9474_04306	Phage portal protein	NA
UHGV-2156826_21	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2156826_21	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2156826_21	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-2156826_22	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2156826_22	UniRef90	UniRef90_C9LCN6	Putative phage terminase, large subunit	NA
UHGV-2156826_22	eggNOG-mapper	411470.RUMGNA_02062	NA	NA
UHGV-2156826_22	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2156826_22	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2156826_22	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2156826_22	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-2156826_23	PHROG	phrog_1066	NA	unknown function
UHGV-2156826_23	eggNOG-mapper	397290.C810_00417	NA	NA
UHGV-2156826_23	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-2156826_24	UniRef90	UniRef90_A0A350U006	HNH domain-containing protein	NA
UHGV-2156826_24	eggNOG-mapper	1203606.HMPREF1526_00983	HNH endonuclease	NA
UHGV-2156826_24	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2156826_26	PHROG	phrog_11237	NA	unknown function
UHGV-2156826_26	eggNOG-mapper	1235798.C817_02584	NA	NA
UHGV-2156826_27	PHROG	phrog_824	NA	unknown function
UHGV-2156826_27	UniRef90	UniRef90_R6DT92	VRR-NUC domain-containing protein	NA
UHGV-2156826_27	eggNOG-mapper	1414720.CBYM010000002_gene588	VRR-NUC domain	NA
UHGV-2156826_27	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-2156826_27	Structural annotation	PF08774	NA	NA
UHGV-2156826_28	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2156826_28	eggNOG-mapper	561177.ANHYDRO_01389	NA	NA
UHGV-2156826_28	Structural annotation	PF21578, NF033538	NA	NA
UHGV-2156826_29	PHROG	phrog_20229	NA	unknown function
UHGV-2156826_29	UniRef90	UniRef90_D7GQL4	Transmembrane Fragile-X-F protein	NA
UHGV-2156826_29	Structural annotation	TIGR04438	NA	NA
UHGV-2156826_30	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-2156826_30	UniRef90	UniRef90_R6E548	Prophage pi1 protein 29	NA
UHGV-2156826_30	eggNOG-mapper	478749.BRYFOR_08526	NA	NA
UHGV-2156826_31	PHROG	phrog_24368	NA	unknown function
UHGV-2156826_32	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-2156826_32	UniRef90	UniRef90_A0A2V2FSM6	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-2156826_32	eggNOG-mapper	573061.Clocel_3558	NA	NA
UHGV-2156826_32	Pfam	PF14359	NA	DUF4406
UHGV-2156826_32	COG	COG3613	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-2156826_32	Structural annotation	PF14359, MF_03036, NF007783, COG3613	NA	NA
UHGV-2156826_34	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-2156826_34	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2156826_34	UniRef90	UniRef90_R6E553	DNA methylase family protein	NA
UHGV-2156826_34	eggNOG-mapper	1123489.AUAN01000010_gene370	DEAD-like helicases superfamily	NA
UHGV-2156826_34	PADLOC	MTase_II_00085	Type II methyltransferase	RM
UHGV-2156826_34	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-2156826_34	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-2156826_34	Structural annotation	PF01555, PF16203, PF04851, MF_01821, MF_00472, NF041790, NF008572, COG0553, COG0863	NA	NA
UHGV-2156826_42	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-2156826_42	PHROG	phrog_6218	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-2156826_42	UniRef90	UniRef90_R6DVU6	ParB-like partition protein	NA
UHGV-2156826_42	eggNOG-mapper	394503.Ccel_3306	Belongs to the ParB family	NA
UHGV-2156826_42	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-2156826_42	NCBIFam	TIGR00180.1	ParB/RepB/Spo0J family partition protein	NA
UHGV-2156826_42	COG	COG0710	3-dehydroquinate dehydratase	NA
UHGV-2156826_42	Structural annotation	PF02195, PF18579, MF_02015, TIGR00180, COG1475	NA	NA
UHGV-2156826_43	UniRef90	UniRef90_A0A3D1LDL3	DNA-binding protein	NA
UHGV-2156826_43	eggNOG-mapper	1235797.C816_00778	TIGRFAM DNA binding domain, excisionase family	NA
UHGV-2156826_45	UniRef90	UniRef90_UPI0005B296BA	transcriptional regulator	NA
UHGV-2156826_45	eggNOG-mapper	1347392.CCEZ01000005_gene1206	NA	NA
UHGV-2156826_45	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-2156826_46	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-2156826_46	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2156826_46	UniRef90	UniRef90_R6DTB4	Peptidase S24-like protein	NA
UHGV-2156826_46	eggNOG-mapper	511680.BUTYVIB_00430	Helix-turn-helix XRE-family like proteins	NA
UHGV-2156826_46	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-2156826_46	Structural annotation	PF12844, MF_00535, NF041951, COG1396	NA	NA
UHGV-2156826_47	PHROG	phrog_1914	NA	unknown function
UHGV-2156826_47	UniRef90	UniRef90_R6DVV5	Predicted Zn peptidase	NA
UHGV-2156826_47	eggNOG-mapper	1160721.RBI_I01604	NA	NA
UHGV-2156826_47	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-2156826_47	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-2156826_47	Structural annotation	PF06114, COG2856	NA	NA
UHGV-2156826_48	KOfam	K03763	polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]	NA
UHGV-2156826_48	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-2156826_48	UniRef90	UniRef90_A0A7C9H3B0	BRCT domain-containing protein	NA
UHGV-2156826_48	eggNOG-mapper	537013.CLOSTMETH_02498	EXOIII	NA
UHGV-2156826_48	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-2156826_48	Pfam	PF00929	Exonuclease	RNase_T
UHGV-2156826_48	Pfam	PF00533	BRCA1 C Terminus (BRCT) domain	BRCT
UHGV-2156826_48	NCBIFam	TIGR00573.1	exonuclease, DNA polymerase III, epsilon subunit family	NA
UHGV-2156826_48	COG	COG0272	NAD-dependent DNA ligase	NA
UHGV-2156826_48	Structural annotation	PF00929, PF00533, MF_00157, NF005289, COG0847	NA	NA
UHGV-2156826_49	eggNOG-mapper	1105029.HMPREF1137_1911	NA	NA
UHGV-2156826_49	Structural annotation	PF11631, TIGR03066	NA	NA
UHGV-2156826_50	KOfam	K14059	int; integrase	NA
UHGV-2156826_50	PHROG	phrog_1	integrase	integration and excision
UHGV-2156826_50	UniRef90	UniRef90_A0A413G0Q9	Site-specific integrase	NA
UHGV-2156826_50	eggNOG-mapper	877411.JMMA01000002_gene204	Belongs to the 'phage' integrase family	NA
UHGV-2156826_50	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-2156826_50	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2156826_50	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2156826_50	Structural annotation	PF00589, PF13102, MF_01808, TIGR02224, COG4974	NA	NA