UHGV-2157187

Genome information

Genome length 39,261 bps

CDS count 54

Completeness 99.90% (high-quality)

geNomad score 0.9795

Prediction confidence Confident

Genome information
Genome ID	UHGV-2157187
vOTU ID	vOTU-014636
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029734\|Ga0245168_100178\|provirus_27215_70077
BioSample	SAMEA3449220
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9795
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	45.24
Jumbo phage	No

Genome content
Genome length	39,261 bps
GC content	38.18%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	92.72%
Average CDS length	676.50 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2157187_1	KOfam	K07755	AS3MT; arsenite methyltransferase [EC:2.1.1.137]	NA
UHGV-2157187_1	PHROG	phrog_4752	tRNA methyltransferase	other
UHGV-2157187_1	UniRef90	UniRef90_A0A174TNM4	Class I SAM-dependent methyltransferase	NA
UHGV-2157187_1	eggNOG-mapper	585394.RHOM_01050	Methyltransferase domain protein	NA
UHGV-2157187_1	Pfam	PF08241	Methyltransferase domain	Methyltransf_11
UHGV-2157187_1	COG	COG0500	SAM-dependent methyltransferase	NA
UHGV-2157187_2	eggNOG-mapper	411469.EUBHAL_01069	NA	NA
UHGV-2157187_3	KOfam	K14059	int; integrase	NA
UHGV-2157187_3	PHROG	phrog_1	integrase	integration and excision
UHGV-2157187_3	UniRef90	UniRef90_A0A173S3V2	Tyrosine recombinase XerD	NA
UHGV-2157187_3	eggNOG-mapper	742740.HMPREF9474_02388	Belongs to the 'phage' integrase family	NA
UHGV-2157187_3	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2157187_3	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2157187_3	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-2157187_4	UniRef90	UniRef90_A0A417V8U5	BIG2 domain-containing protein	NA
UHGV-2157187_4	eggNOG-mapper	397290.C810_01424	NA	NA
UHGV-2157187_5	PHROG	phrog_87	metallo-protease	other
UHGV-2157187_5	UniRef90	UniRef90_A0A173S221	Metallopeptidase immA	NA
UHGV-2157187_5	eggNOG-mapper	411460.RUMTOR_02055	IrrE N-terminal-like domain	NA
UHGV-2157187_5	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-2157187_5	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-2157187_5	Structural annotation	PF06114, COG2856	NA	NA
UHGV-2157187_6	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-2157187_6	UniRef90	UniRef90_A0A374AM30	XRE family transcriptional regulator	NA
UHGV-2157187_6	eggNOG-mapper	411469.EUBHAL_01994	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-2157187_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2157187_6	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-2157187_6	Structural annotation	PF01381, MF_00535, NF041951, COG1396	NA	NA
UHGV-2157187_7	KOfam	K14056	puuR; HTH-type transcriptional regulator, repressor for puuD	NA
UHGV-2157187_7	UniRef90	UniRef90_L1Q6Z0	DNA-binding helix-turn-helix protein	NA
UHGV-2157187_7	eggNOG-mapper	411490.ANACAC_00814	Helix-turn-helix XRE-family like proteins	NA
UHGV-2157187_7	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-2157187_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2157187_7	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2157187_7	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-2157187_8	PHROG	phrog_9607	NA	unknown function
UHGV-2157187_8	eggNOG-mapper	1304866.K413DRAFT_4639	NA	NA
UHGV-2157187_8	Structural annotation	PF02883, MF_00791, NF012200, COG3354	NA	NA
UHGV-2157187_9	PHROG	phrog_6058	NA	unknown function
UHGV-2157187_9	UniRef90	UniRef90_A0A1Q2C3Y4	HTH cro/C1-type domain-containing protein	NA
UHGV-2157187_9	eggNOG-mapper	742740.HMPREF9474_02381	NA	NA
UHGV-2157187_12	PHROG	phrog_3777	NA	unknown function
UHGV-2157187_12	UniRef90	UniRef90_UPI00142FF24A	NA	NA
UHGV-2157187_12	Structural annotation	PF18441	NA	NA
UHGV-2157187_13	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-2157187_13	UniRef90	UniRef90_B0P3C0	YqaJ viral recombinase family protein	NA
UHGV-2157187_13	eggNOG-mapper	1095750.HMPREF9970_1677	YqaJ viral recombinase family	NA
UHGV-2157187_13	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-2157187_13	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-2157187_13	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-2157187_13	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-2157187_15	PHROG	phrog_674	NA	unknown function
UHGV-2157187_15	UniRef90	UniRef90_A0A415G8D2	NA	NA
UHGV-2157187_15	eggNOG-mapper	742740.HMPREF9474_03487	NA	NA
UHGV-2157187_15	Pfam	PF07083	NA	DUF1351
UHGV-2157187_15	Structural annotation	PF07083	NA	NA
UHGV-2157187_16	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-2157187_16	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2157187_16	UniRef90	UniRef90_A0A173RED8	p33	NA
UHGV-2157187_16	eggNOG-mapper	742740.HMPREF9474_03488	RecT family	NA
UHGV-2157187_16	Pfam	PF03837	RecT family	RecT
UHGV-2157187_16	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-2157187_16	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-2157187_16	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-2157187_17	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-2157187_17	eggNOG-mapper	411461.DORFOR_00017	NA	NA
UHGV-2157187_18	PHROG	phrog_1029	NA	unknown function
UHGV-2157187_18	eggNOG-mapper	411461.DORFOR_00016	NA	NA
UHGV-2157187_18	Structural annotation	PF10065, COG5532	NA	NA
UHGV-2157187_19	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-2157187_19	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2157187_19	UniRef90	UniRef90_D4MWK7	Holliday junction resolvase	NA
UHGV-2157187_19	eggNOG-mapper	857293.CAAU_0790	Endodeoxyribonuclease RusA	NA
UHGV-2157187_19	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-2157187_19	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-2157187_19	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-2157187_20	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2157187_20	UniRef90	UniRef90_A0A173REQ2	NA	NA
UHGV-2157187_20	eggNOG-mapper	411461.DORFOR_00014	NA	NA
UHGV-2157187_20	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-2157187_20	COG	COG3935	DNA replication protein DnaD	NA
UHGV-2157187_20	Structural annotation	PF14297, TIGR01446, TIGR01714	NA	NA
UHGV-2157187_21	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-2157187_21	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-2157187_21	UniRef90	UniRef90_D4MWK9	Phage regulatory protein, rha family	NA
UHGV-2157187_21	eggNOG-mapper	1582156.A0A0A8WJ71_9CAUD	DNA binding	NA
UHGV-2157187_21	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-2157187_21	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-2157187_21	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-2157187_21	Structural annotation	PF03374, PF09669, TIGR02681, COG3645, COG3561	NA	NA
UHGV-2157187_22	PHROG	phrog_17690	NA	unknown function
UHGV-2157187_22	eggNOG-mapper	1235798.C817_03495	NA	NA
UHGV-2157187_24	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-2157187_24	UniRef90	UniRef90_C0CTA2	Phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-2157187_24	eggNOG-mapper	33035.JPJF01000123_gene2435	NA	NA
UHGV-2157187_24	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-2157187_24	Structural annotation	PF01507, MF_00064, TIGR00434, COG0175	NA	NA
UHGV-2157187_26	eggNOG-mapper	1121871.AUAT01000002_gene1365	NA	NA
UHGV-2157187_27	Pfam	PF12664	NA	DUF3789
UHGV-2157187_29	PHROG	phrog_30258	NA	unknown function
UHGV-2157187_30	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2157187_30	UniRef90	UniRef90_R6ZAS5	GED domain-containing protein	NA
UHGV-2157187_30	eggNOG-mapper	411490.ANACAC_00789	NA	NA
UHGV-2157187_30	Structural annotation	PF02996	NA	NA
UHGV-2157187_31	PHROG	phrog_1048	NA	unknown function
UHGV-2157187_31	UniRef90	UniRef90_A0A417V882	NA	NA
UHGV-2157187_31	eggNOG-mapper	457412.RSAG_01107	NA	NA
UHGV-2157187_31	Pfam	PF11195	NA	DUF2829
UHGV-2157187_31	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-2157187_31	Structural annotation	PF11195	NA	NA
UHGV-2157187_32	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-2157187_32	UniRef90	UniRef90_A0A285PT53	Prokaryotic membrane lipoprotein lipid attachment site profile	NA
UHGV-2157187_32	eggNOG-mapper	1235792.C808_00058	NA	NA
UHGV-2157187_33	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-2157187_33	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-2157187_33	UniRef90	UniRef90_A0A6L5Y140	Terminase small subunit	NA
UHGV-2157187_33	eggNOG-mapper	1298920.KI911353_gene4857	Terminase small subunit	NA
UHGV-2157187_33	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-2157187_33	COG	COG3728	Phage terminase, small subunit	NA
UHGV-2157187_33	Structural annotation	PF03592, COG3728	NA	NA
UHGV-2157187_34	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2157187_34	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-2157187_34	UniRef90	UniRef90_A0A417V8L6	Terminase	NA
UHGV-2157187_34	eggNOG-mapper	1304866.K413DRAFT_0811	Phage terminase, large subunit, PBSX family	NA
UHGV-2157187_34	COG	COG1783	Phage terminase large subunit	NA
UHGV-2157187_34	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-2157187_35	PHROG	phrog_533	portal protein	head and packaging
UHGV-2157187_35	UniRef90	UniRef90_A0A417V837	Phage portal protein	NA
UHGV-2157187_35	eggNOG-mapper	33035.JPJF01000093_gene2257	NA	NA
UHGV-2157187_35	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2157187_36	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2157187_36	UniRef90	UniRef90_UPI0015715021	minor capsid protein	NA
UHGV-2157187_36	eggNOG-mapper	33035.JPJF01000093_gene2255	NA	NA
UHGV-2157187_36	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2157187_36	COG	COG5585	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	NA
UHGV-2157187_36	Structural annotation	PF06152	NA	NA
UHGV-2157187_38	Structural annotation	PF20873	NA	NA
UHGV-2157187_39	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-2157187_39	eggNOG-mapper	483218.BACPEC_01156	NA	NA
UHGV-2157187_40	PHROG	phrog_422	major head protein	head and packaging
UHGV-2157187_40	UniRef90	UniRef90_A0A417V845	Phage capsid protein	NA
UHGV-2157187_40	eggNOG-mapper	663278.Ethha_1589	NA	NA
UHGV-2157187_40	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-2157187_41	PHROG	phrog_541	head-tail adaptor	connector
UHGV-2157187_41	eggNOG-mapper	1298920.KI911353_gene4848	NA	NA
UHGV-2157187_42	PHROG	phrog_8710	NA	unknown function
UHGV-2157187_42	eggNOG-mapper	742740.HMPREF9474_03508	NA	NA
UHGV-2157187_42	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-2157187_43	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2157187_43	eggNOG-mapper	742740.HMPREF9474_03509	NA	NA
UHGV-2157187_44	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-2157187_44	UniRef90	UniRef90_UPI001D0627B3	minor capsid protein	NA
UHGV-2157187_44	eggNOG-mapper	679192.HMPREF9013_1297	NA	NA
UHGV-2157187_44	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-2157187_44	Structural annotation	PF12691, COG5003	NA	NA
UHGV-2157187_45	PHROG	phrog_820	major tail protein	tail
UHGV-2157187_45	eggNOG-mapper	1282664.H354_06691	NA	NA
UHGV-2157187_45	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2157187_46	PHROG	phrog_8300	NA	unknown function
UHGV-2157187_46	eggNOG-mapper	33035.JPJF01000093_gene2245	NA	NA
UHGV-2157187_46	Structural annotation	PF06854	NA	NA
UHGV-2157187_47	PHROG	phrog_8355	NA	unknown function
UHGV-2157187_47	UniRef90	UniRef90_UPI001D0684E3	bacteriophage Gp15 family protein	NA
UHGV-2157187_47	eggNOG-mapper	33035.JPJF01000093_gene2244	NA	NA
UHGV-2157187_48	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-2157187_48	UniRef90	UniRef90_A0A1C5PIN9	Phage-related protein	NA
UHGV-2157187_48	eggNOG-mapper	742740.HMPREF9474_03514	tape measure	NA
UHGV-2157187_48	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-2157187_48	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-2157187_49	PHROG	phrog_1194	NA	unknown function
UHGV-2157187_49	eggNOG-mapper	33035.JPJF01000093_gene2242	NA	NA
UHGV-2157187_49	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-2157187_50	PHROG	phrog_1401	NA	unknown function
UHGV-2157187_50	UniRef90	UniRef90_UPI001A9A8A65	NA	NA
UHGV-2157187_50	Structural annotation	PF07761	NA	NA
UHGV-2157187_51	PHROG	phrog_16267	NA	unknown function
UHGV-2157187_51	UniRef90	UniRef90_UPI00156FBBAC	tail fiber domain-containing protein	NA
UHGV-2157187_51	eggNOG-mapper	1294142.CINTURNW_1706	Phage minor structural protein	NA
UHGV-2157187_51	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-2157187_51	COG	COG4926	Phage-related protein	NA
UHGV-2157187_52	PHROG	phrog_2566	NA	unknown function
UHGV-2157187_52	eggNOG-mapper	1232453.BAIF02000058_gene1639	NA	NA
UHGV-2157187_53	PHROG	phrog_199	holin	lysis
UHGV-2157187_53	UniRef90	UniRef90_A0A1Q2CAY6	Holin	NA
UHGV-2157187_53	eggNOG-mapper	742723.HMPREF9477_00889	Bacteriophage holin family	NA
UHGV-2157187_53	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-2157187_53	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-2157187_53	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-2157187_53	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-2157187_54	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2157187_54	PHROG	phrog_435	endolysin	lysis
UHGV-2157187_54	UniRef90	UniRef90_UPI000985947E	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2157187_54	eggNOG-mapper	411490.ANACAC_00597	Cell wall hydrolase autolysin	NA
UHGV-2157187_54	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-2157187_54	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2157187_54	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA