UHGV-2157372

Genome information

Genome length 32,887 bps

CDS count 48

Completeness 93.96% (high-quality)

geNomad score 0.9429

Prediction confidence Confident

Genome information
Genome ID	UHGV-2157372
vOTU ID	vOTU-014637
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029734\|Ga0245168_100973
BioSample	SAMEA3449220
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	93.96% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9429
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.35
Jumbo phage	No

Genome content
Genome length	32,887 bps
GC content	44.07%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	48
CDS density	89.34%
Average CDS length	614.88 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2157372_1	KOfam	K01990	ABC-2.A; ABC-2 type transport system ATP-binding protein	NA
UHGV-2157372_1	PHROG	phrog_293	ABC transporter	moron, auxiliary metabolic gene and host takeover
UHGV-2157372_1	UniRef90	UniRef90_UPI000619970E	ABC transporter ATP-binding protein	NA
UHGV-2157372_1	eggNOG-mapper	398578.Daci_0992	AAA domain, putative AbiEii toxin, Type IV TA system	NA
UHGV-2157372_1	Pfam	PF00005	ABC transporter	ABC_tran
UHGV-2157372_1	COG	COG1131	ABC-type multidrug transport system, ATPase component	NA
UHGV-2157372_4	KOfam	K10268	FBXL2_20; F-box and leucine-rich repeat protein 2/20	NA
UHGV-2157372_4	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-2157372_5	KOfam	K14059	int; integrase	NA
UHGV-2157372_5	PHROG	phrog_1	integrase	integration and excision
UHGV-2157372_5	UniRef90	UniRef90_R6I414	Phage integrase family protein	NA
UHGV-2157372_5	eggNOG-mapper	1207063.P24_18844	Belongs to the 'phage' integrase family	NA
UHGV-2157372_5	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2157372_5	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2157372_5	Structural annotation	PF00589, PF09003, MF_01808, TIGR02225, COG4974	NA	NA
UHGV-2157372_7	Structural annotation	PF20549, COG1862	NA	NA
UHGV-2157372_9	Structural annotation	PF09871, MF_01549, NF004670, COG4014	NA	NA
UHGV-2157372_11	PHROG	phrog_19569	NA	unknown function
UHGV-2157372_12	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-2157372_12	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2157372_12	UniRef90	UniRef90_A0A7V8A6Q1	Recombinase phage RecT family	NA
UHGV-2157372_12	eggNOG-mapper	1095750.HMPREF9970_1675	RecT family	NA
UHGV-2157372_12	Pfam	PF03837	RecT family	RecT
UHGV-2157372_12	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-2157372_12	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-2157372_12	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-2157372_13	PHROG	phrog_674	NA	unknown function
UHGV-2157372_13	UniRef90	UniRef90_UPI0013795154	NA	NA
UHGV-2157372_13	eggNOG-mapper	1121441.AUCX01000014_gene537	NA	NA
UHGV-2157372_13	Pfam	PF07083	NA	DUF1351
UHGV-2157372_13	Structural annotation	PF07083	NA	NA
UHGV-2157372_14	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-2157372_14	UniRef90	UniRef90_A0A1V5L7R0	YqaJ-like viral recombinase domain protein	NA
UHGV-2157372_14	eggNOG-mapper	742740.HMPREF9474_03486	YqaJ viral recombinase family	NA
UHGV-2157372_14	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-2157372_14	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-2157372_14	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-2157372_14	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-2157372_18	PHROG	phrog_9243	NA	unknown function
UHGV-2157372_18	UniRef90	UniRef90_A0A522X4M9	NA	NA
UHGV-2157372_18	eggNOG-mapper	1219045.BV98_002202	NA	NA
UHGV-2157372_18	Pfam	PF12686	NA	DUF3800
UHGV-2157372_18	Structural annotation	MF_00052_A, NF011119	NA	NA
UHGV-2157372_19	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-2157372_19	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-2157372_19	UniRef90	UniRef90_A0A3D5BAV1	Peptidase_S24 domain-containing protein	NA
UHGV-2157372_19	eggNOG-mapper	158500.BV97_01382	Transcriptional regulator	NA
UHGV-2157372_19	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-2157372_19	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-2157372_19	Structural annotation	PF13443, PF16452, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-2157372_20	UniRef90	UniRef90_A0A7X6BGZ5	2,4-dienoyl-CoA reductase-like NADH-dependent reductase (Old Yellow Enzyme family)	NA
UHGV-2157372_20	eggNOG-mapper	383381.EH30_08500	NA	NA
UHGV-2157372_20	Structural annotation	PF02376, NF040507, COG4800	NA	NA
UHGV-2157372_21	PHROG	phrog_6576	NA	unknown function
UHGV-2157372_21	eggNOG-mapper	292.DM42_3338	Ftsk_gamma	NA
UHGV-2157372_21	COG	COG1674	DNA segregation ATPase FtsK/SpoIIIE or related protein	NA
UHGV-2157372_22	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-2157372_22	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2157372_22	UniRef90	UniRef90_UPI0007B6BBA1	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-2157372_22	eggNOG-mapper	1129145.H2BD71_9CAUD	magnesium ion binding	NA
UHGV-2157372_22	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-2157372_22	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-2157372_25	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-2157372_25	COG	COG0640	DNA-binding transcriptional regulator, ArsR family	NA
UHGV-2157372_26	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-2157372_26	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-2157372_26	UniRef90	UniRef90_A0A2G1QRT8	Replicative DNA helicase	NA
UHGV-2157372_26	eggNOG-mapper	1522072.IL54_2667	it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins	NA
UHGV-2157372_26	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-2157372_26	COG	COG0305	Replicative DNA helicase	NA
UHGV-2157372_26	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-2157372_29	eggNOG-mapper	466088.CL42_03965	NA	NA
UHGV-2157372_33	PHROG	phrog_518	Rha-like transcriptional regulator	transcription regulation
UHGV-2157372_33	UniRef90	UniRef90_UPI000A1CAF36	Rha family transcriptional regulator	NA
UHGV-2157372_33	eggNOG-mapper	546266.NEIMUCOT_06655	Phage regulatory protein, Rha family	NA
UHGV-2157372_33	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-2157372_33	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-2157372_33	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-2157372_34	PHROG	phrog_87	metallo-protease	other
UHGV-2157372_34	UniRef90	UniRef90_A0A1Q6UEY0	Peptidase_M78 domain-containing protein	NA
UHGV-2157372_34	eggNOG-mapper	471854.Dfer_2449	Zn peptidase	NA
UHGV-2157372_34	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-2157372_34	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-2157372_34	Structural annotation	PF06114, COG2856	NA	NA
UHGV-2157372_36	PHROG	phrog_4102	terminase small subunit	head and packaging
UHGV-2157372_36	UniRef90	UniRef90_A0A5Q2W2N5	Terminase small subunit	NA
UHGV-2157372_36	Structural annotation	PF07141	NA	NA
UHGV-2157372_37	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2157372_37	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-2157372_37	UniRef90	UniRef90_A0A1Q6UF23	Terminase_3 domain-containing protein	NA
UHGV-2157372_37	eggNOG-mapper	1267535.KB906767_gene2463	phage Terminase large subunit	NA
UHGV-2157372_37	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-2157372_37	COG	COG1783	Phage terminase large subunit	NA
UHGV-2157372_37	Structural annotation	PF04466, PF17289, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2157372_38	PHROG	phrog_332	head-tail adaptor	connector
UHGV-2157372_38	UniRef90	UniRef90_R5HLP0	PfWMP4_39	NA
UHGV-2157372_38	Structural annotation	PF12236, MF_04120, TIGR01538, COG4695	NA	NA
UHGV-2157372_41	PHROG	phrog_267	major head protein	head and packaging
UHGV-2157372_41	UniRef90	UniRef90_A0A353QSS2	P22 coat protein-protein 5 domain protein	NA
UHGV-2157372_41	eggNOG-mapper	877414.ATWA01000001_gene909	P22 coat protein-protein 5 domain protein	NA
UHGV-2157372_41	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-2157372_43	Structural annotation	PF20387	NA	NA
UHGV-2157372_44	Structural annotation	PF11134, MF_00923, NF000022, COG4257	NA	NA