UHGV-2158343

Genome information

Genome length 33,421 bps

CDS count 44

Completeness 74.13% (medium-quality)

geNomad score 0.9684

Prediction confidence Confident

Genome information
Genome ID	UHGV-2158343
vOTU ID	vOTU-016651
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029765\|Ga0243842_100138\|provirus_61777_101851
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	74.13% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9684
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	57.99
Jumbo phage	No

Genome content
Genome length	33,421 bps
GC content	41.78%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	44
CDS density	92.36%
Average CDS length	704.11 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2158343_1	KOfam	K14059	int; integrase	NA
UHGV-2158343_1	PHROG	phrog_1	integrase	integration and excision
UHGV-2158343_1	UniRef90	UniRef90_A0A414P9D4	Site-specific integrase	NA
UHGV-2158343_1	eggNOG-mapper	1280698.AUJS01000007_gene999	Phage integrase family	NA
UHGV-2158343_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2158343_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2158343_1	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-2158343_2	PHROG	phrog_1847	NA	unknown function
UHGV-2158343_2	UniRef90	UniRef90_A0A564SD82	T5orf172 domain protein	NA
UHGV-2158343_2	eggNOG-mapper	1235792.C808_05258	NA	NA
UHGV-2158343_2	Pfam	PF13250	NA	DUF4041
UHGV-2158343_2	Pfam	PF13455	Meiotically up-regulated gene 113	MUG113
UHGV-2158343_2	COG	COG0172	Seryl-tRNA synthetase	NA
UHGV-2158343_2	Structural annotation	PF13250, PF19824, MF_01506	NA	NA
UHGV-2158343_3	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-2158343_3	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-2158343_3	UniRef90	UniRef90_A0A3E2TSF0	XRE family transcriptional regulator	NA
UHGV-2158343_3	eggNOG-mapper	411490.ANACAC_00815	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-2158343_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2158343_3	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-2158343_3	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-2158343_3	Structural annotation	PF01381, PF00717, MF_00015, NF041951, COG1396	NA	NA
UHGV-2158343_4	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-2158343_4	UniRef90	UniRef90_A0A3E2TSC3	XRE family transcriptional regulator	NA
UHGV-2158343_4	eggNOG-mapper	411469.EUBHAL_01993	Helix-turn-helix XRE-family like proteins	NA
UHGV-2158343_4	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-2158343_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2158343_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2158343_4	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-2158343_5	eggNOG-mapper	1095750.HMPREF9970_1010	NA	NA
UHGV-2158343_6	PHROG	phrog_3240	NA	unknown function
UHGV-2158343_6	eggNOG-mapper	1158607.UAU_01711	NA	NA
UHGV-2158343_9	PHROG	phrog_26484	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2158343_9	UniRef90	UniRef90_A0A2N5PB10	PC4 domain-containing protein	NA
UHGV-2158343_9	eggNOG-mapper	1229517.AMFD01000013_gene1357	Transcriptional Coactivator p15 (PC4)	NA
UHGV-2158343_9	Pfam	PF02229	Transcriptional Coactivator p15 (PC4)	PC4
UHGV-2158343_9	COG	COG4443	NA	NA
UHGV-2158343_9	Structural annotation	COG4443	NA	NA
UHGV-2158343_10	PHROG	phrog_22695	NA	unknown function
UHGV-2158343_10	eggNOG-mapper	1235799.C818_04196	NA	NA
UHGV-2158343_11	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-2158343_11	UniRef90	UniRef90_UPI000C79535F	NA	NA
UHGV-2158343_11	eggNOG-mapper	1235799.C818_04197	NA	NA
UHGV-2158343_11	Pfam	PF10926	NA	DUF2800
UHGV-2158343_11	COG	COG2887	RecB family exonuclease	NA
UHGV-2158343_11	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-2158343_12	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2158343_12	UniRef90	UniRef90_UPI0015D1A9B3	NA	NA
UHGV-2158343_12	eggNOG-mapper	1235799.C818_04198	NA	NA
UHGV-2158343_12	Pfam	PF10991	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
UHGV-2158343_12	Structural annotation	PF10991, MF_04153	NA	NA
UHGV-2158343_13	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-2158343_13	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-2158343_13	UniRef90	UniRef90_A0A174BA55	DNA polymerase I, thermostable	NA
UHGV-2158343_13	eggNOG-mapper	1235799.C818_04199	DNA polymerase A domain	NA
UHGV-2158343_13	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-2158343_13	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-2158343_13	Structural annotation	PF00476, MF_04101, NF011540, COG0749	NA	NA
UHGV-2158343_14	PHROG	phrog_256	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2158343_14	UniRef90	UniRef90_A0A174B9G0	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-2158343_14	eggNOG-mapper	1235799.C818_04200	Virulence-associated protein E	NA
UHGV-2158343_14	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-2158343_14	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-2158343_14	Structural annotation	PF05272, NF011296, NF040562, COG5545	NA	NA
UHGV-2158343_15	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2158343_15	UniRef90	UniRef90_R6ST09	VRR-NUC domain-containing protein	NA
UHGV-2158343_15	eggNOG-mapper	1235799.C818_04201	VRR_NUC	NA
UHGV-2158343_15	Structural annotation	PF01870, MF_01490, NF002585, COG1591	NA	NA
UHGV-2158343_16	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-2158343_16	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2158343_16	UniRef90	UniRef90_A0A2N5PB08	DEAD/DEAH box helicase	NA
UHGV-2158343_16	eggNOG-mapper	1235799.C818_04202	SNF2 family N-terminal domain	NA
UHGV-2158343_16	PADLOC	DpdE_00010	DpdE	DPD
UHGV-2158343_16	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-2158343_16	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-2158343_16	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-2158343_16	Structural annotation	PF13872, PF16203, MF_01821, NF041790, COG0553	NA	NA
UHGV-2158343_19	AcrCatalog	cluster_12858	NA	NA
UHGV-2158343_20	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2158343_20	UniRef90	UniRef90_A0A373STV4	NA	NA
UHGV-2158343_20	eggNOG-mapper	411461.DORFOR_00754	sigma factor activity	NA
UHGV-2158343_20	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-2158343_20	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-2158343_22	PHROG	phrog_1758	acetyltransferase	other
UHGV-2158343_22	UniRef90	UniRef90_A0A239X206	NA	NA
UHGV-2158343_22	eggNOG-mapper	1336234.JAGN01000004_gene506	acetyltransferase	NA
UHGV-2158343_22	COG	COG0454	N-acetyltransferase, GNAT superfamily (includes histone acetyltransferase HPA2)	NA
UHGV-2158343_22	Structural annotation	PF13673, MF_02210, NF000360, COG2153	NA	NA
UHGV-2158343_23	PHROG	phrog_509	terminase small subunit	head and packaging
UHGV-2158343_23	UniRef90	UniRef90_UPI001D04D642	phage terminase small subunit	NA
UHGV-2158343_23	eggNOG-mapper	1449050.JNLE01000003_gene3896	DNA packaging	NA
UHGV-2158343_23	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-2158343_23	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-2158343_23	COG	COG5484	NA	NA
UHGV-2158343_23	Structural annotation	NF040601, COG5484	NA	NA
UHGV-2158343_24	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2158343_24	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-2158343_24	UniRef90	UniRef90_UPI001D051132	PBSX family phage terminase large subunit	NA
UHGV-2158343_24	eggNOG-mapper	610130.Closa_1390	Terminase RNAseH like domain	NA
UHGV-2158343_24	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-2158343_24	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-2158343_24	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2158343_24	COG	COG1783	Phage terminase large subunit	NA
UHGV-2158343_24	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2158343_25	PHROG	phrog_64	portal protein	head and packaging
UHGV-2158343_25	UniRef90	UniRef90_UPI001D03DB0E	phage portal protein	NA
UHGV-2158343_25	eggNOG-mapper	1121335.Clst_0386	phage portal protein, SPP1	NA
UHGV-2158343_25	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-2158343_25	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-2158343_25	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-2158343_26	PHROG	phrog_4728	head morphogenesis	head and packaging
UHGV-2158343_26	UniRef90	UniRef90_UPI001D048EED	minor capsid protein	NA
UHGV-2158343_26	eggNOG-mapper	411468.CLOSCI_00291	Phage head morphogenesis protein, SPP1 gp7 family	NA
UHGV-2158343_26	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-2158343_26	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-2158343_26	COG	COG2369	NA	NA
UHGV-2158343_29	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-2158343_29	UniRef90	UniRef90_UPI000C76E206	phage scaffolding protein	NA
UHGV-2158343_29	eggNOG-mapper	411468.CLOSCI_00287	Phage minor structural protein GP20	NA
UHGV-2158343_29	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-2158343_29	Structural annotation	PF06810	NA	NA
UHGV-2158343_30	PHROG	phrog_267	major head protein	head and packaging
UHGV-2158343_30	UniRef90	UniRef90_A0A7V8IA85	Phage coat protein gp6	NA
UHGV-2158343_30	eggNOG-mapper	1321778.HMPREF1982_03550	P22 coat protein-protein 5 domain protein	NA
UHGV-2158343_30	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-2158343_31	PHROG	phrog_132	head-tail adaptor	connector
UHGV-2158343_31	UniRef90	UniRef90_UPI001C3B0296	Phage head-tail connector protein	NA
UHGV-2158343_31	eggNOG-mapper	1540257.JQMW01000009_gene3373	Phage gp6-like head-tail connector protein	NA
UHGV-2158343_31	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-2158343_31	Structural annotation	PF05135	NA	NA
UHGV-2158343_32	UniRef90	UniRef90_A0A414P9G2	Phage head-tail adapter protein	NA
UHGV-2158343_32	eggNOG-mapper	411468.CLOSCI_00284	NA	NA
UHGV-2158343_32	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-2158343_33	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2158343_33	UniRef90	UniRef90_A0A414P9G4	HK97 gp10 family phage protein	NA
UHGV-2158343_33	eggNOG-mapper	411468.CLOSCI_00283	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-2158343_33	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2158343_33	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-2158343_33	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-2158343_34	Structural annotation	PF12691	NA	NA
UHGV-2158343_35	PHROG	phrog_2175	protein with Ig domain	other
UHGV-2158343_35	eggNOG-mapper	411468.CLOSCI_00281	NA	NA
UHGV-2158343_35	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-2158343_36	Structural annotation	PF16462	NA	NA
UHGV-2158343_37	eggNOG-mapper	411468.CLOSCI_00279	NA	NA
UHGV-2158343_38	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-2158343_38	UniRef90	UniRef90_A0A414P9F7	Phage tail tape measure protein	NA
UHGV-2158343_38	eggNOG-mapper	411468.CLOSCI_00278	phage tail tape measure protein	NA
UHGV-2158343_38	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-2158343_38	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-2158343_38	COG	COG5283	Phage-related tail protein	NA
UHGV-2158343_38	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-2158343_39	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-2158343_39	UniRef90	UniRef90_A0A414P9H2	Phage tail protein	NA
UHGV-2158343_39	eggNOG-mapper	411461.DORFOR_01176	NA	NA
UHGV-2158343_39	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-2158343_40	PHROG	phrog_538	minor tail protein	tail
UHGV-2158343_40	UniRef90	UniRef90_UPI001E2C8064	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-2158343_40	eggNOG-mapper	665950.HMPREF1025_02520	NA	NA
UHGV-2158343_40	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-2158343_40	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-2158343_41	PHROG	phrog_13141	NA	unknown function
UHGV-2158343_41	UniRef90	UniRef90_UPI001570499E	H-type lectin domain-containing protein	NA
UHGV-2158343_41	eggNOG-mapper	665950.HMPREF1025_02519	NA	NA
UHGV-2158343_41	Structural annotation	PF20747, PF08931	NA	NA
UHGV-2158343_42	eggNOG-mapper	1123237.Salmuc_01650	NA	NA
UHGV-2158343_44	eggNOG-mapper	742733.HMPREF9469_05016	NA	NA
UHGV-2158343_44	Pfam	PF19789	NA	DUF6273