UHGV-2159973

Genome information

Genome length 39,710 bps

CDS count 39

Completeness 52.87% (medium-quality)

geNomad score 0.9671

Prediction confidence Confident

Genome information
Genome ID	UHGV-2159973
vOTU ID	vOTU-017170
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029730\|Ga0245159_100445\|provirus_125_43987
BioSample	SAMEA3449211
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	52.87% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	6
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9671
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	23.76
Jumbo phage	No

Genome content
Genome length	39,710 bps
GC content	47.24%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	39
CDS density	92.37%
Average CDS length	942.39 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2159973_1	PHROG	phrog_87	metallo-protease	other
UHGV-2159973_1	UniRef90	UniRef90_A0A2N0ULV1	Peptidase_M78 domain-containing protein	NA
UHGV-2159973_1	eggNOG-mapper	445971.ANASTE_00176	IrrE N-terminal-like domain	NA
UHGV-2159973_1	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-2159973_1	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-2159973_1	Structural annotation	PF06114, COG2856	NA	NA
UHGV-2159973_2	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2159973_2	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-2159973_2	UniRef90	UniRef90_UPI0015F3DE1D	helix-turn-helix domain-containing protein	NA
UHGV-2159973_2	eggNOG-mapper	411463.EUBVEN_00115	Helix-turn-helix domain	NA
UHGV-2159973_2	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-2159973_2	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-2159973_2	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-2159973_3	UniRef90	UniRef90_A0A8J6PHW3	Helix-turn-helix transcriptional regulator	NA
UHGV-2159973_3	eggNOG-mapper	1121289.JHVL01000079_gene1187	Helix-turn-helix XRE-family like proteins	NA
UHGV-2159973_3	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-2159973_3	Structural annotation	PF13443, NF041951, COG1396	NA	NA
UHGV-2159973_7	PHROG	phrog_5781	NA	unknown function
UHGV-2159973_7	UniRef90	UniRef90_A0A2V2FSM6	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-2159973_7	eggNOG-mapper	2342.SOPEG_2218	NA	NA
UHGV-2159973_7	Pfam	PF14359	NA	DUF4406
UHGV-2159973_7	COG	COG3613	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-2159973_7	Structural annotation	PF14359, MF_03036, COG3613	NA	NA
UHGV-2159973_9	PHROG	phrog_111	DNA methyltransferase	other
UHGV-2159973_9	UniRef90	UniRef90_A0A316S635	Adenine methyltransferase	NA
UHGV-2159973_9	eggNOG-mapper	411468.CLOSCI_00567	DNA N-6-adenine-methyltransferase	NA
UHGV-2159973_9	PADLOC	oMTase_00015	orphan methyltransferase	RM
UHGV-2159973_9	Pfam	PF05869	DNA N-6-adenine-methyltransferase (Dam)	Dam
UHGV-2159973_9	Structural annotation	PF05869, TIGR01712, COG0338	NA	NA
UHGV-2159973_10	NCBIFam	TIGR03831.1	YgiT-type zinc finger protein	NA
UHGV-2159973_11	eggNOG-mapper	476272.RUMHYD_03348	NA	NA
UHGV-2159973_11	Structural annotation	PF18300, MF_01549, NF007981	NA	NA
UHGV-2159973_14	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-2159973_14	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2159973_14	UniRef90	UniRef90_A0A350IHS4	Single-stranded DNA-binding protein	NA
UHGV-2159973_14	eggNOG-mapper	1278306.KB906914_gene1072	Single-stranded DNA-binding protein	NA
UHGV-2159973_14	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-2159973_14	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-2159973_14	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-2159973_14	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-2159973_14	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-2159973_16	eggNOG-mapper	500632.CLONEX_00691	Replication initiator protein A	NA
UHGV-2159973_17	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2159973_17	UniRef90	UniRef90_R6RCC6	Gp31	NA
UHGV-2159973_17	eggNOG-mapper	1414720.CBYM010000002_gene589	NA	NA
UHGV-2159973_17	Structural annotation	PF21578, NF033538	NA	NA
UHGV-2159973_18	PHROG	phrog_824	NA	unknown function
UHGV-2159973_18	UniRef90	UniRef90_A0A3B8VJR3	VRR-NUC domain-containing protein	NA
UHGV-2159973_18	eggNOG-mapper	97139.C824_00735	VRR-NUC domain	NA
UHGV-2159973_18	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-2159973_18	Structural annotation	PF08774	NA	NA
UHGV-2159973_20	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-2159973_20	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2159973_24	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2159973_24	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-2159973_24	UniRef90	UniRef90_UPI00082C9116	PBSX family phage terminase large subunit	NA
UHGV-2159973_24	eggNOG-mapper	445971.ANASTE_00711	Phage terminase, large subunit, PBSX family	NA
UHGV-2159973_24	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-2159973_24	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2159973_24	COG	COG1783	Phage terminase large subunit	NA
UHGV-2159973_24	Structural annotation	PF04466, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2159973_25	PHROG	phrog_156	portal protein	head and packaging
UHGV-2159973_25	eggNOG-mapper	693746.OBV_23930	NA	NA
UHGV-2159973_25	Structural annotation	PF16510, MF_04120, TIGR01542, COG4695	NA	NA
UHGV-2159973_26	PHROG	phrog_35275	NA	unknown function
UHGV-2159973_27	Pfam	PF09956	NA	DUF2190
UHGV-2159973_28	PHROG	phrog_371	major head protein	head and packaging
UHGV-2159973_28	UniRef90	UniRef90_UPI00164C0E21	Mu-like prophage major head subunit gpT family protein	NA
UHGV-2159973_28	eggNOG-mapper	1226322.HMPREF1545_03848	NA	NA
UHGV-2159973_28	Pfam	PF10124	Mu-like prophage major head subunit gpT	Mu-like_gpT
UHGV-2159973_28	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2159973_29	eggNOG-mapper	1232449.BAHV02000016_gene1817	NA	NA
UHGV-2159973_29	Structural annotation	PF20387, NF038128, COG5156	NA	NA
UHGV-2159973_30	eggNOG-mapper	445971.ANASTE_00721	NA	NA
UHGV-2159973_32	PHROG	phrog_22978	NA	unknown function
UHGV-2159973_32	eggNOG-mapper	1226322.HMPREF1545_00787	NA	NA
UHGV-2159973_33	KOfam	K10804	tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]	NA
UHGV-2159973_33	PHROG	phrog_14008	NA	unknown function
UHGV-2159973_33	eggNOG-mapper	536233.CLO_1374	GDSL-like Lipase/Acylhydrolase family	NA
UHGV-2159973_33	Pfam	PF13472	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
UHGV-2159973_36	PHROG	phrog_443	holin	lysis
UHGV-2159973_36	UniRef90	UniRef90_UPI0009B98E42	holin	NA
UHGV-2159973_36	eggNOG-mapper	1469948.JPNB01000002_gene3855	Putative lactococcus lactis phage r1t holin	NA
UHGV-2159973_36	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-2159973_36	Structural annotation	PF16945	NA	NA
UHGV-2159973_37	PHROG	phrog_9066	endolysin	lysis
UHGV-2159973_37	UniRef90	UniRef90_R7ID00	SH3 domain protein	NA
UHGV-2159973_37	eggNOG-mapper	428127.EUBDOL_01569	NA	NA
UHGV-2159973_37	Structural annotation	PF01551, PF08460, NF040883, COG0739, COG4991	NA	NA
UHGV-2159973_39	eggNOG-mapper	1291050.JAGE01000001_gene991	NA	NA