UHGV-2160978

Genome information

Genome length 41,646 bps

CDS count 56

Completeness 56.88% (medium-quality)

geNomad score 0.9745

Prediction confidence Confident

Genome information
Genome ID	UHGV-2160978
vOTU ID	vOTU-041562
vOTU representative	Yes
Source dataset	IMG/VR v4
Original genome ID	3300029777\|Ga0243715_1000277\|provirus_27213_68858
BioSample	SAMN05971411
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	56.88% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9745
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	26.47
Jumbo phage	No

Genome content
Genome length	41,646 bps
GC content	53.34%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	93.87%
Average CDS length	704.30 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2160978_1	PHROG	phrog_10797	NA	unknown function
UHGV-2160978_1	UniRef90	UniRef90_A0A0X8K8T8	Glycoprotease	NA
UHGV-2160978_1	eggNOG-mapper	568816.Acin_1214	NA	NA
UHGV-2160978_1	Structural annotation	PF06531	NA	NA
UHGV-2160978_2	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2160978_2	PHROG	phrog_435	endolysin	lysis
UHGV-2160978_2	UniRef90	UniRef90_A0A6N7W2M5	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2160978_2	eggNOG-mapper	1064535.MELS_1119	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2160978_2	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-2160978_2	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2160978_2	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-2160978_3	eggNOG-mapper	568816.Acin_1216	NA	NA
UHGV-2160978_5	eggNOG-mapper	568816.Acin_1218	NA	NA
UHGV-2160978_6	KOfam	K06871	NA	NA
UHGV-2160978_6	PHROG	phrog_1802	radical SAM domain-containing protein	other
UHGV-2160978_6	UniRef90	UniRef90_G4Q8B3	Radical SAM core domain-containing protein	NA
UHGV-2160978_6	eggNOG-mapper	568816.Acin_1219	radical SAM	NA
UHGV-2160978_6	PADLOC	pVip-lone	Viperins not associated with kinases	Viperin
UHGV-2160978_6	Pfam	PF04055	Radical SAM superfamily	Radical_SAM
UHGV-2160978_6	COG	COG0641	Sulfatase maturation enzyme AslB, radical SAM superfamily	NA
UHGV-2160978_6	Structural annotation	PF04055, MF_00660, TIGR04136, COG0641	NA	NA
UHGV-2160978_7	Structural annotation	PF02832	NA	NA
UHGV-2160978_8	Structural annotation	PF13403, NF038136	NA	NA
UHGV-2160978_10	UniRef90	UniRef90_A0A6N7VL88	TNFR-Cys domain-containing protein	NA
UHGV-2160978_11	KOfam	K06871	NA	NA
UHGV-2160978_11	PHROG	phrog_1802	radical SAM domain-containing protein	other
UHGV-2160978_11	UniRef90	UniRef90_G4Q8B6	Radical SAM core domain-containing protein	NA
UHGV-2160978_11	eggNOG-mapper	568816.Acin_1222	radical SAM	NA
UHGV-2160978_11	PADLOC	pVip-lone	Viperins not associated with kinases	Viperin
UHGV-2160978_11	Pfam	PF04055	Radical SAM superfamily	Radical_SAM
UHGV-2160978_11	NCBIFam	TIGR04085.1	SPASM domain-containing protein	NA
UHGV-2160978_11	COG	COG0641	Sulfatase maturation enzyme AslB, radical SAM superfamily	NA
UHGV-2160978_12	PHROG	phrog_7032	tail fiber protein	tail
UHGV-2160978_12	eggNOG-mapper	568816.Acin_1223	alcohol dehydrogenase	NA
UHGV-2160978_12	COG	COG1063	Threonine dehydrogenase or related Zn-dependent dehydrogenase	NA
UHGV-2160978_12	Structural annotation	PF11962, COG5471	NA	NA
UHGV-2160978_13	Structural annotation	PF16640, NF011805, COG5456	NA	NA
UHGV-2160978_14	eggNOG-mapper	568816.Acin_1225	NA	NA
UHGV-2160978_15	eggNOG-mapper	568816.Acin_1226	NA	NA
UHGV-2160978_15	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-2160978_16	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-2160978_16	UniRef90	UniRef90_A0A3A5R8N1	Phage tail protein	NA
UHGV-2160978_16	eggNOG-mapper	568816.Acin_1227	Phage tail protein	NA
UHGV-2160978_16	Structural annotation	PF20753, PF19512, TIGR01633, COG4722	NA	NA
UHGV-2160978_17	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-2160978_17	UniRef90	UniRef90_UPI000D0F0EF4	tape measure protein	NA
UHGV-2160978_17	eggNOG-mapper	568816.Acin_1228	tape measure	NA
UHGV-2160978_17	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-2160978_17	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-2160978_17	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-2160978_17	Structural annotation	PF20155, TIGR01760, NF033930, COG3941	NA	NA
UHGV-2160978_18	eggNOG-mapper	568816.Acin_1229	NA	NA
UHGV-2160978_19	Structural annotation	PF11836	NA	NA
UHGV-2160978_20	PHROG	phrog_1407	major tail protein	tail
UHGV-2160978_20	UniRef90	UniRef90_A0A3B9DV80	Phage major tail protein, TP901-1 family	NA
UHGV-2160978_20	eggNOG-mapper	568816.Acin_1231	Phage tail tube protein	NA
UHGV-2160978_20	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-2160978_20	NCBIFam	TIGR02126.1	phage major tail protein, TP901-1 family	NA
UHGV-2160978_20	COG	COG5437	Phage tail protein, TP901-1 family	NA
UHGV-2160978_20	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-2160978_21	eggNOG-mapper	568816.Acin_1232	NA	NA
UHGV-2160978_21	Structural annotation	PF08873, COG5003	NA	NA
UHGV-2160978_22	eggNOG-mapper	568816.Acin_1233	NA	NA
UHGV-2160978_23	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-2160978_23	UniRef90	UniRef90_U7UGG7	Tail protein, HK97 family	NA
UHGV-2160978_23	eggNOG-mapper	568816.Acin_1234	NA	NA
UHGV-2160978_23	Structural annotation	TIGR01725	NA	NA
UHGV-2160978_24	PHROG	phrog_267	major head protein	head and packaging
UHGV-2160978_24	UniRef90	UniRef90_A0A6N7W2V3	P22 coat protein-protein 5 domain protein	NA
UHGV-2160978_24	eggNOG-mapper	568816.Acin_1235	P22 coat protein-protein 5 domain protein	NA
UHGV-2160978_24	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-2160978_25	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-2160978_25	eggNOG-mapper	568816.Acin_1236	NA	NA
UHGV-2160978_25	Structural annotation	PF06810	NA	NA
UHGV-2160978_27	PHROG	phrog_15041	NA	unknown function
UHGV-2160978_27	Structural annotation	PF10827	NA	NA
UHGV-2160978_28	PHROG	phrog_1657	head morphogenesis	head and packaging
UHGV-2160978_28	UniRef90	UniRef90_UPI00041DDA5E	polymorphic toxin type 50 domain-containing protein	NA
UHGV-2160978_28	eggNOG-mapper	568816.Acin_1239	NA	NA
UHGV-2160978_28	Structural annotation	PF21814	NA	NA
UHGV-2160978_29	PHROG	phrog_145	portal protein	head and packaging
UHGV-2160978_29	UniRef90	UniRef90_F9MMJ7	Conserved domain protein	NA
UHGV-2160978_29	eggNOG-mapper	568816.Acin_1240	NA	NA
UHGV-2160978_29	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-2160978_30	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2160978_30	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-2160978_30	UniRef90	UniRef90_G4Q8N3	Phage terminase large subunit	NA
UHGV-2160978_30	eggNOG-mapper	568816.Acin_1241	Phage terminase large subunit	NA
UHGV-2160978_30	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-2160978_30	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-2160978_30	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2160978_30	COG	COG1783	Phage terminase large subunit	NA
UHGV-2160978_30	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-2160978_31	PHROG	phrog_2412	NA	unknown function
UHGV-2160978_31	eggNOG-mapper	568816.Acin_1242	NA	NA
UHGV-2160978_32	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2160978_32	eggNOG-mapper	568816.Acin_1244	NA	NA
UHGV-2160978_32	Structural annotation	PF08281, TIGR01636, COG1191	NA	NA
UHGV-2160978_33	UniRef90	UniRef90_A0A2S0M9F1	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-2160978_33	eggNOG-mapper	1273103.NM10_01114	Endodeoxyribonuclease RusA	NA
UHGV-2160978_33	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-2160978_33	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-2160978_36	KOfam	K11144	dnaI; primosomal protein DnaI	NA
UHGV-2160978_36	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-2160978_36	UniRef90	UniRef90_UPI001D085F29	ATP-binding protein	NA
UHGV-2160978_36	eggNOG-mapper	585503.HMPREF7545_1719	IstB-like ATP binding protein	NA
UHGV-2160978_36	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-2160978_36	COG	COG1484	DNA replication protein DnaC	NA
UHGV-2160978_36	Structural annotation	PF01695, MF_01919, NF005992, COG1484	NA	NA
UHGV-2160978_37	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-2160978_37	UniRef90	UniRef90_A0A1M5TV14	Helix-turn-helix domain-containing protein	NA
UHGV-2160978_37	eggNOG-mapper	568816.Acin_1251	DnaD domain protein	NA
UHGV-2160978_37	COG	COG3935	DNA replication protein DnaD	NA
UHGV-2160978_38	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-2160978_38	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2160978_38	UniRef90	UniRef90_A0A6N7W2R8	Recombinase RecT	NA
UHGV-2160978_38	eggNOG-mapper	568816.Acin_1252	Recombinase, phage RecT family	NA
UHGV-2160978_38	Pfam	PF03837	RecT family	RecT
UHGV-2160978_38	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-2160978_38	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-2160978_38	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-2160978_39	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-2160978_39	UniRef90	UniRef90_G4Q8P5	YqaJ domain-containing protein	NA
UHGV-2160978_39	eggNOG-mapper	568816.Acin_1253	YqaJ viral recombinase family protein	NA
UHGV-2160978_39	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-2160978_39	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-2160978_39	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-2160978_39	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-2160978_41	UniRef90	UniRef90_UPI000CF84C6B	helix-turn-helix domain-containing protein	NA
UHGV-2160978_41	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-2160978_41	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2160978_41	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2160978_41	Structural annotation	PF01381, PF05339, MF_00535, NF041951, COG3655, COG3093	NA	NA
UHGV-2160978_42	UniRef90	UniRef90_G4Q8P9	HTH_17 domain-containing protein	NA
UHGV-2160978_42	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-2160978_42	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-2160978_42	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-2160978_42	Structural annotation	PF12728, NF033787, COG3311	NA	NA
UHGV-2160978_47	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-2160978_47	UniRef90	UniRef90_UPI000D1117AA	helix-turn-helix domain-containing protein	NA
UHGV-2160978_47	eggNOG-mapper	1009370.ALO_12841	NA	NA
UHGV-2160978_47	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2160978_47	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-2160978_48	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-2160978_48	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2160978_48	UniRef90	UniRef90_UPI000D0EC91F	helix-turn-helix domain-containing protein	NA
UHGV-2160978_48	eggNOG-mapper	568816.Acin_1261	Cro/C1-type HTH DNA-binding domain	NA
UHGV-2160978_48	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-2160978_48	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2160978_48	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2160978_48	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-2160978_49	Structural annotation	PF06114	NA	NA
UHGV-2160978_50	UniRef90	UniRef90_UPI000D0F63D9	SAP domain-containing protein	NA
UHGV-2160978_50	eggNOG-mapper	568816.Acin_1262	NA	NA
UHGV-2160978_51	UniRef90	UniRef90_A0A2A6Z732	Cell filamentation protein Fic	NA
UHGV-2160978_51	eggNOG-mapper	1035196.HMPREF9998_00638	Virulence protein RhuM family	NA
UHGV-2160978_51	Pfam	PF13310	Virulence protein RhuM family	Virulence_RhuM
UHGV-2160978_51	COG	COG3943	NA	NA
UHGV-2160978_51	Structural annotation	PF13310, TIGR02681, COG3943	NA	NA
UHGV-2160978_53	PHROG	phrog_9699	NA	unknown function
UHGV-2160978_53	eggNOG-mapper	679201.HMPREF9334_00292	NA	NA
UHGV-2160978_54	KOfam	K14059	int; integrase	NA
UHGV-2160978_54	PHROG	phrog_1	integrase	integration and excision
UHGV-2160978_54	UniRef90	UniRef90_G4Q8Q7	Site-specific recombinase	NA
UHGV-2160978_54	eggNOG-mapper	568816.Acin_1265	Belongs to the 'phage' integrase family	NA
UHGV-2160978_54	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-2160978_54	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-2160978_54	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2160978_54	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2160978_54	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-2160978_55	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-2160978_55	PHROG	phrog_95	integrase	integration and excision
UHGV-2160978_55	UniRef90	UniRef90_A0A6N3DYU1	Transposon gamma-delta resolvase	NA
UHGV-2160978_55	eggNOG-mapper	568816.Acin_1311	overlaps another CDS with the same product name	NA
UHGV-2160978_55	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-2160978_55	Pfam	PF07508	Recombinase	Recombinase
UHGV-2160978_55	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-2160978_55	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2160978_55	Structural annotation	PF00239, PF07508, PF18822, NF041201, COG1961	NA	NA
UHGV-2160978_56	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-2160978_56	PHROG	phrog_95	integrase	integration and excision
UHGV-2160978_56	UniRef90	UniRef90_E8LGL6	Resolvase, N-terminal domain protein	NA
UHGV-2160978_56	eggNOG-mapper	568816.Acin_1312	overlaps another CDS with the same product name	NA
UHGV-2160978_56	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-2160978_56	Pfam	PF07508	Recombinase	Recombinase
UHGV-2160978_56	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-2160978_56	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2160978_56	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA